genome.fa.s26.2.7.7.80.10.50.1000.136.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Length:  64892201

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   

This is table  136  of  221  ( 26413 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41915472--41915796	112	3.0	111	87	4	421	35	16	16	32	1.91
41915818--41915855	20	1.9	20	84	10	51	57	2	13	26	1.49
41915923--41915954	4	7.8	4	96	3	55	75	3	0	21	0.95
41915923--41915988	12	5.3	12	76	20	55	69	6	3	21	1.24
41916122--41916155	18	1.9	18	88	5	52	52	0	14	32	1.42
41916075--41916244	90	2.0	88	85	9	233	50	1	9	39	1.43
41917309--41917349	12	3.4	12	89	0	64	12	7	51	29	1.66
41917893--41918188	98	3.0	98	92	2	472	29	19	15	34	1.93
41918181--41918654	131	3.6	128	78	8	433	27	22	19	30	1.98
41918110--41918567	44	10.4	44	73	10	269	27	22	19	30	1.98
41924579--41924872	112	2.7	109	88	5	409	35	17	16	29	1.92
41924925--41924962	20	1.9	20	84	10	51	57	2	13	26	1.49
41925063--41925112	22	2.3	21	79	3	55	70	6	4	20	1.25
41925200--41925233	18	1.9	18	88	5	52	52	0	14	32	1.42
41925333--41925421	29	3.0	29	74	9	81	58	1	5	34	1.29
41925861--41925919	30	2.0	30	90	6	93	59	0	1	38	1.08
41925861--41925912	10	5.1	10	75	13	52	55	0	1	42	1.10
41925874--41925957	38	2.2	38	95	0	150	63	0	3	33	1.12
41926773--41926813	12	3.4	12	86	0	55	12	7	48	31	1.68
41928014--41928039	2	13.0	2	100	0	52	50	0	0	50	1.00
41932258--41932316	29	2.0	29	100	0	118	38	20	13	27	1.90
41932312--41932369	29	2.0	29	100	0	116	34	13	24	27	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41935986--41936054	35	2.0	35	88	2	104	37	23	5	33	1.79
41945548--41945593	23	2.0	24	86	4	67	26	21	4	47	1.69
41946005--41946116	21	5.5	21	75	12	81	14	14	39	32	1.86
41946819--41946867	25	1.9	25	83	4	62	46	10	10	32	1.71
41946778--41947090	136	2.3	135	90	2	495	45	25	7	22	1.77
41948981--41949118	62	2.2	62	88	0	204	48	21	7	22	1.75
41949413--41949448	16	2.2	17	95	5	65	58	25	0	16	1.38
41949366--41949442	40	2.0	39	87	5	111	58	16	3	20	1.54
41949858--41949898	21	2.0	21	90	0	64	29	26	12	31	1.92
41949935--41950000	30	2.2	30	84	10	82	22	12	18	46	1.81
41950644--41950707	29	2.2	31	75	16	73	45	1	6	46	1.37
41953560--41953601	22	1.9	22	85	9	59	52	16	0	30	1.44
41958101--41958126	3	8.7	3	100	0	52	0	65	0	34	0.93
41966780--41966897	42	2.8	42	76	2	121	20	21	16	42	1.89
41966872--41966975	42	2.5	42	79	3	95	14	26	21	37	1.92
41977799--41977834	18	1.9	18	88	5	54	16	25	0	58	1.38
41977798--41977835	13	3.1	12	85	14	51	15	23	0	60	1.35
41983978--41984045	33	2.1	33	100	0	136	35	5	14	44	1.70
41985753--41985785	14	2.3	15	89	5	50	69	6	0	24	1.10
41987361--41987415	21	2.5	22	78	18	62	36	3	7	52	1.47
41987951--41987989	20	2.0	20	89	0	60	30	2	0	66	1.05
41987987--41988022	19	1.9	18	88	5	54	55	0	0	44	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41990238--41990390	49	3.1	49	79	0	162	19	26	24	29	1.99
41997444--41997515	36	2.0	36	91	5	119	23	22	8	45	1.79
41998643--41998668	13	2.0	13	100	0	52	61	30	0	7	1.24
42010059--42010177	43	2.8	42	76	7	123	36	26	13	24	1.92
42011303--42011327	13	1.9	13	100	0	50	40	24	4	32	1.73
42021222--42021380	49	3.2	49	74	15	141	31	1	0	66	1.07
42021267--42021337	9	7.6	9	71	20	56	30	1	0	67	0.99
42021286--42021363	11	6.5	11	72	19	59	37	2	0	60	1.11
42021278--42021368	21	4.7	20	70	24	70	34	2	0	63	1.06
42021297--42021368	38	1.9	38	97	2	137	34	2	0	62	1.10
42022232--42022280	25	2.0	25	88	8	73	22	22	16	38	1.92
42022260--42022317	25	2.3	25	87	0	80	24	20	24	31	1.98
42027373--42027420	19	2.5	19	83	9	62	27	2	0	70	0.98
42027379--42027422	14	3.3	13	84	12	54	25	2	0	72	0.96
42031262--42031304	3	14.0	3	81	13	52	27	2	0	69	1.00
42033225--42033416	50	3.8	50	85	1	242	26	22	30	21	1.99
42035578--42035635	6	9.8	6	71	17	50	20	0	1	77	0.86
42035583--42035625	9	4.8	9	91	8	70	20	0	2	76	0.89
42040557--42040595	18	2.2	18	95	0	69	28	2	10	58	1.44
42040808--42040843	7	5.1	7	89	0	54	2	52	0	44	1.15
42044486--42044646	77	2.1	77	97	0	304	33	8	15	42	1.78
42045613--42045650	11	3.5	11	100	0	76	47	26	0	26	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42048519--42048727	92	2.3	91	86	5	278	45	3	3	46	1.39
42048655--42048702	26	1.9	25	84	16	64	45	0	2	52	1.12
42048746--42049154	120	3.4	120	94	2	682	43	2	5	48	1.39
42048900--42049097	66	3.2	66	67	21	199	42	3	6	47	1.44
42048987--42049038	15	3.6	15	80	12	56	44	0	1	53	1.11
42049116--42049157	15	2.7	16	82	14	52	45	0	2	52	1.13
42049107--42049148	15	2.9	15	82	10	52	47	0	0	52	1.00
42049091--42049377	153	1.9	153	94	0	502	47	3	4	44	1.41
42048772--42049250	240	2.0	235	81	10	544	44	3	5	46	1.43
42049526--42049561	16	2.2	16	100	0	72	38	36	0	25	1.56
42052317--42052368	25	2.1	25	85	0	68	5	25	15	53	1.63
42052907--42052941	17	2.0	18	88	5	54	71	0	0	28	0.86
42055845--42055907	21	3.0	20	75	6	63	15	22	14	47	1.81
42055850--42055949	42	2.4	42	86	3	130	18	22	16	44	1.87
42059661--42059870	32	6.7	32	76	8	182	44	15	9	30	1.77
42059709--42059848	64	2.2	62	93	3	237	42	15	9	32	1.78
42077650--42077796	43	3.4	44	77	5	149	29	15	22	31	1.95
42080577--42080629	23	2.3	23	84	12	81	30	24	20	24	1.99
42090390--42090455	26	2.5	26	92	0	105	21	24	28	25	1.99
42091615--42091803	96	2.0	96	100	0	378	22	18	28	30	1.97
42093751--42093820	28	2.5	28	90	0	104	40	18	14	27	1.89
42093751--42093828	28	2.8	28	88	0	84	38	17	16	26	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42095244--42095273	16	1.9	15	93	6	51	53	16	0	30	1.44
42097656--42097792	49	2.8	49	90	0	211	32	26	13	27	1.94
42098964--42099062	23	4.3	23	82	0	135	30	25	20	24	1.99
42103085--42103118	18	1.9	18	94	5	61	5	47	20	26	1.73
42109122--42109172	27	1.9	26	88	4	75	78	7	7	5	1.09
42109182--42109230	12	3.8	12	79	12	53	77	0	16	6	0.96
42111319--42111892	88	6.6	87	87	4	735	27	25	24	22	2.00
42111319--42111892	175	3.3	174	86	4	744	27	25	24	22	2.00
42112026--42112236	44	4.6	45	68	17	137	32	18	20	27	1.96
42112012--42112192	98	1.8	97	82	6	231	32	19	20	27	1.97
42112012--42112278	142	1.9	142	97	0	507	33	19	20	26	1.96
42112285--42112571	50	5.7	50	84	0	340	33	25	20	21	1.97
42112266--42112573	100	3.1	100	82	0	384	33	25	19	21	1.97
42113971--42114015	23	2.0	23	86	0	63	37	8	4	48	1.55
42118305--42118384	36	2.2	36	80	4	90	72	2	17	7	1.19
42127477--42127601	54	2.3	54	97	0	232	8	28	32	30	1.87
42139371--42139593	27	8.3	27	84	2	259	42	21	16	19	1.89
42139380--42139621	81	3.0	78	77	10	236	41	21	16	20	1.90
42144740--42144811	35	2.1	35	97	0	135	31	18	23	26	1.97
42156212--42156319	50	2.1	53	84	8	143	22	17	28	31	1.97
42160029--42160104	11	6.8	11	70	24	52	55	1	1	42	1.16
42165837--42165863	13	2.1	13	100	0	54	40	14	14	29	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42175161--42177647	511	4.9	511	95	0	4361	30	12	22	34	1.91
42178284--42181378	512	6.0	513	95	1	5387	29	12	23	34	1.91
42185625--42185674	14	3.6	14	81	7	50	38	36	2	24	1.67
42186189--42186251	26	2.4	27	97	2	119	41	9	0	49	1.35
42186244--42186281	19	2.0	19	85	10	51	81	7	2	7	0.96
42186674--42186739	19	3.5	19	79	4	89	37	10	1	50	1.47
42186829--42186984	82	1.9	81	97	1	294	44	10	5	39	1.62
42187053--42187148	19	5.2	19	81	5	124	48	0	13	37	1.43
42187053--42187148	37	2.6	37	98	0	183	48	0	13	37	1.43
42187786--42187847	28	2.3	28	91	5	101	56	0	3	40	1.15

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221