genome.fa.s26.2.7.7.80.10.50.1000.216.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Length:  64892201

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   

This is table  216  of  221  ( 26413 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63376832--63380254	852	4.0	858	85	3	4503	31	19	18	30	1.95
63379984--63380017	16	2.1	17	88	5	52	61	11	17	8	1.54
63380637--63380715	20	4.2	20	67	18	60	46	10	7	35	1.66
63380676--63380797	19	6.5	19	72	15	83	42	9	10	36	1.73
63380645--63380733	35	2.5	35	84	14	103	47	10	8	33	1.69
63380712--63380765	21	2.6	22	80	11	69	35	11	14	38	1.82
63380752--63380787	17	2.2	17	90	5	56	47	11	5	36	1.63
63380712--63380810	21	5.0	21	70	22	61	41	9	11	38	1.72
63380769--63380810	22	2.0	20	86	9	57	45	7	7	40	1.59
63380836--63380949	17	6.3	17	71	13	75	41	10	14	33	1.81
63380821--63380989	38	4.4	38	73	14	143	41	9	15	33	1.79
63380869--63381055	20	9.8	18	65	22	53	43	9	13	34	1.75
63382000--63382079	7	11.0	7	75	12	63	1	21	0	77	0.84
63382000--63382071	25	2.9	24	80	10	81	1	20	0	77	0.84
63382000--63382080	29	2.8	29	85	9	87	1	22	0	76	0.86
63382002--63382079	19	4.3	19	79	15	76	1	21	0	76	0.85
63381982--63382098	41	2.9	41	79	9	105	2	23	0	74	0.94
63382031--63382076	4	12.5	4	86	13	64	0	23	0	76	0.79
63382038--63382096	29	2.0	29	84	12	77	0	30	0	69	0.89
63382219--63382266	25	2.0	25	83	4	62	0	18	10	70	1.15
63382581--63382726	30	4.9	30	78	8	136	41	6	20	32	1.77
63382601--63382727	29	4.2	30	82	6	150	40	4	20	33	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63382580--63382718	59	2.3	61	86	2	183	42	5	20	30	1.76
63382601--63382726	30	4.2	30	82	9	150	40	4	20	34	1.74
63383244--63383413	92	1.9	88	91	4	277	30	20	18	31	1.96
63383247--63383434	92	2.1	87	81	7	207	34	18	18	28	1.95
63382907--63384150	157	7.8	156	80	10	1132	34	20	17	28	1.95
63383244--63384150	80	11.3	86	79	12	647	34	20	17	28	1.95
63382907--63384150	75	15.7	81	80	9	1183	34	20	17	28	1.95
63385001--63385053	20	2.7	19	85	8	70	0	3	7	88	0.61
63385001--63385053	1	53.0	1	76	0	52	0	3	7	88	0.61
63391092--63391311	17	12.8	17	72	13	130	45	12	11	30	1.77
63391093--63391289	33	5.8	33	73	8	166	47	11	11	29	1.75
63391091--63391317	67	3.3	68	80	12	259	44	11	11	32	1.76
63391406--63391460	15	3.3	17	78	14	53	41	9	14	34	1.77
63391400--63391453	18	3.1	17	80	17	58	48	9	14	27	1.75
63391442--63391491	20	2.5	20	87	9	66	34	10	10	46	1.71
63391488--63391574	18	4.9	18	70	14	65	40	10	13	35	1.79
63391497--63391541	15	2.7	17	80	13	58	35	11	11	42	1.76
63391497--63391564	15	4.1	16	73	16	57	38	11	14	35	1.83
63391614--63391816	18	11.2	18	71	15	123	45	10	14	29	1.78
63391688--63391792	17	5.8	18	71	16	74	43	9	16	30	1.79
63391614--63391816	34	5.6	34	71	13	131	45	10	14	29	1.78
63391722--63391870	71	2.1	70	79	13	162	42	12	14	30	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63392571--63392623	14	3.9	14	73	14	56	1	26	0	71	0.96
63392576--63392629	25	2.3	23	87	9	81	1	25	0	72	0.95
63392573--63392631	14	4.3	14	70	16	52	1	25	0	72	0.93
63392755--63392806	21	2.6	21	84	6	63	1	13	15	69	1.28
63393116--63393291	30	5.9	29	77	8	140	41	3	21	33	1.70
63394828--63394884	3	18.3	3	78	10	53	36	3	1	57	1.26
63402908--63402932	3	8.3	3	100	0	50	32	32	0	36	1.58
63404056--63404082	14	1.9	14	100	0	54	37	0	3	59	1.15
63404106--63404178	32	2.3	34	84	13	93	60	0	6	32	1.23
63404192--63404282	36	2.9	30	82	14	87	58	1	1	39	1.13
63404329--63404354	4	6.5	4	100	0	52	76	0	0	23	0.78
63411050--63411082	15	2.2	15	89	10	50	42	45	6	6	1.53
63422205--63422266	30	2.1	29	82	8	72	41	22	0	35	1.54
63422840--63422901	14	4.4	14	73	15	56	79	0	20	0	0.74
63422843--63422901	6	10.0	6	77	14	52	79	0	20	0	0.73
63422855--63422899	22	2.0	22	87	8	65	80	0	20	0	0.72
63423228--63423252	5	5.0	5	100	0	50	20	0	0	80	0.72
63423542--63423902	17	20.5	17	73	9	192	31	13	9	45	1.76
63423612--63423821	56	3.8	55	75	8	187	34	12	9	43	1.74
63423692--63423737	20	2.3	20	88	0	65	43	8	4	43	1.55
63423705--63423752	19	2.5	19	82	3	60	47	12	2	37	1.53
63434906--63434962	1	57.0	1	75	0	51	87	8	3	0	0.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63434906--63434956	8	6.5	8	84	8	61	88	9	1	0	0.60
63434906--63434950	10	4.4	10	84	15	65	88	11	0	0	0.50
63434913--63434950	11	3.4	11	96	3	67	89	10	0	0	0.49
63434906--63434950	20	2.2	20	96	0	81	88	11	0	0	0.50
63434906--63434962	20	2.9	18	87	10	69	87	8	3	0	0.64
63435819--63436566	76	9.8	75	88	4	918	27	16	20	35	1.94
63436760--63436890	30	4.4	29	72	12	97	33	26	3	36	1.72
63436760--63436922	30	5.5	29	69	13	93	33	25	3	37	1.74
63437454--63437531	6	12.8	6	78	11	79	83	0	12	3	0.78
63437453--63437530	11	7.6	10	76	12	70	83	0	12	3	0.78
63437441--63437531	28	3.3	28	79	11	91	81	0	15	3	0.82
63437441--63437505	34	1.9	34	90	6	105	81	0	18	0	0.69
63437725--63437772	21	2.3	22	82	17	66	27	39	33	0	1.57
63438287--63438443	17	8.8	17	65	23	65	33	14	10	42	1.80
63438339--63438444	17	6.4	17	67	25	66	38	13	11	36	1.80
63438339--63438404	35	1.9	35	90	3	107	36	15	12	36	1.84
63438385--63438443	30	2.0	29	90	3	91	35	13	11	38	1.82
63438417--63438453	19	2.0	18	89	5	56	35	18	10	35	1.86
63438472--63438515	17	2.5	18	77	7	54	20	13	15	50	1.78
63438459--63438546	43	2.0	45	86	4	126	25	12	13	48	1.77
63438514--63438557	19	2.2	20	92	4	72	31	18	13	36	1.90
63438577--63438620	17	2.5	18	81	7	63	18	13	15	52	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63438414--63438741	105	3.1	105	94	3	565	27	13	13	45	1.80
63438681--63438809	67	1.9	69	87	6	192	31	13	10	44	1.78
63438742--63438794	17	3.1	17	89	8	72	28	13	9	49	1.73
63438789--63439006	38	5.9	38	79	10	213	32	16	10	40	1.82
63438853--63438991	17	7.7	17	69	16	75	30	16	12	40	1.85
63438856--63438955	18	5.5	18	69	15	71	32	16	10	42	1.81
63438856--63438992	71	1.9	72	89	8	217	32	16	10	40	1.84
63440920--63441157	129	1.8	129	89	1	370	25	22	20	31	1.98
63441260--63441500	44	5.5	44	65	15	140	26	22	19	31	1.97
63441019--63441534	175	2.9	173	87	4	687	27	21	19	31	1.97
63447502--63447541	19	2.1	19	100	0	80	55	15	20	10	1.68
63448326--63448402	13	5.9	13	92	0	127	38	25	9	25	1.85
63457525--63457566	22	1.9	22	85	9	59	69	9	4	16	1.33
63458833--63458880	3	15.7	3	85	12	62	62	0	0	37	0.95
63458833--63458880	17	2.9	16	88	11	71	62	0	0	37	0.95
63460284--63461043	100	7.6	100	90	0	1099	23	25	22	28	1.99
63462346--63462409	7	9.0	7	82	14	78	14	12	0	73	1.10
63467279--63467328	23	2.2	23	89	7	75	66	0	0	34	0.92
63467279--63467328	3	16.3	3	84	12	66	66	0	0	34	0.92
63467278--63467328	17	3.0	17	88	8	77	64	0	0	35	0.94
63467279--63467327	14	3.6	14	86	13	68	65	0	0	34	0.93
63467278--63467324	11	4.2	11	82	15	60	63	0	0	36	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63467279--63467348	20	3.5	20	86	7	81	64	2	0	32	1.08
63467279--63467348	23	3.2	20	79	16	61	64	2	0	32	1.08
63468488--63468544	26	2.2	26	81	12	64	57	1	8	31	1.39
63471715--63471758	21	2.1	21	83	8	54	50	2	0	47	1.13
63477111--63477215	33	3.3	33	77	8	117	26	20	32	20	1.97
63480049--63480315	145	1.9	142	85	3	374	21	21	17	38	1.93
63488648--63489004	112	3.2	111	92	2	562	34	13	16	35	1.88
63488648--63489004	109	3.2	110	92	3	560	34	13	16	35	1.88
63500187--63500533	109	3.2	109	84	4	486	34	16	13	35	1.89
63500467--63500623	57	2.7	59	86	4	210	25	24	21	28	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221