genome.fa.s26.2.7.7.80.10.50.1000.172.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Length:  64892201

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   

This is table  172  of  221  ( 26413 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51476170--51476272	47	2.2	47	80	3	109	42	18	18	20	1.89
51477545--51477597	17	3.1	18	83	10	65	20	1	5	71	1.16
51478999--51479057	22	2.7	22	84	7	68	16	20	16	45	1.85
51484152--51484183	15	2.1	15	100	0	64	6	6	12	75	1.19
51485686--51485778	44	2.1	44	97	0	177	37	15	6	40	1.72
51485757--51485800	22	2.0	22	91	4	72	40	13	4	40	1.65
51486516--51486548	13	2.8	12	90	9	50	57	3	0	39	1.14
51488581--51488606	5	5.2	5	100	0	52	42	19	19	19	1.90
51489237--51489268	16	1.9	17	93	6	57	53	0	18	28	1.45
51489237--51489281	17	2.6	16	86	10	54	55	0	22	22	1.44
51489632--51489668	9	4.1	9	86	13	58	32	10	13	43	1.79
51494041--51494109	16	4.2	16	92	3	120	24	1	37	36	1.65
51494041--51494109	33	2.1	32	94	2	120	24	1	37	36	1.65
51494090--51494180	45	2.0	45	85	2	121	27	6	28	37	1.82
51494345--51494379	18	2.0	17	88	5	52	54	0	0	45	0.99
51494328--51495314	121	8.2	121	96	1	1774	47	5	3	43	1.44
51494844--51495020	38	4.5	38	64	21	103	45	5	3	45	1.43
51494328--51495314	241	4.1	241	96	1	1770	47	5	3	43	1.44
51498338--51498413	33	2.3	33	97	0	143	35	5	15	43	1.70
51498456--51498537	37	2.2	37	91	0	128	35	8	15	40	1.78
51508661--51508715	19	3.0	19	81	5	51	45	3	0	50	1.19
51508784--51508824	20	2.0	21	85	4	57	41	0	0	58	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51514955--51515029	22	3.4	22	77	0	78	42	13	25	18	1.87
51515945--51516001	30	1.9	29	82	10	71	33	22	15	28	1.95
51519258--51519298	16	2.5	17	88	7	59	24	0	2	73	0.96
51520314--51520371	19	3.1	19	76	16	59	75	0	5	18	0.98
51520307--51520373	12	5.2	13	73	22	54	74	0	4	20	0.99
51526814--51526849	15	2.5	14	86	8	54	44	8	0	47	1.33
51564551--51564597	22	2.1	22	96	0	85	25	31	10	31	1.90
51571353--51571415	13	4.9	13	75	11	67	38	23	4	33	1.76
51571990--51572038	24	2.1	23	85	11	64	55	0	6	38	1.25
51573093--51573123	15	2.1	15	93	0	53	48	0	0	51	1.00
51573437--51573479	14	2.8	16	82	10	54	34	6	9	48	1.62
51575234--51575333	9	11.1	9	78	4	94	15	6	41	38	1.71
51575230--51575323	36	2.6	36	88	6	129	15	5	40	38	1.71
51576473--51576522	25	2.0	25	100	0	100	56	12	8	24	1.62
51577925--51577975	23	2.1	23	82	7	57	25	5	7	60	1.47
51578115--51578177	15	4.3	15	72	8	58	26	1	11	60	1.40
51578451--51578647	98	2.0	98	96	0	367	28	10	23	37	1.88
51579174--51579249	29	2.6	27	76	15	73	30	3	3	61	1.32
51580514--51580548	17	2.1	17	88	0	52	40	20	8	31	1.82
51588501--51588681	41	4.5	41	64	18	119	41	0	4	52	1.27
51588576--51588743	38	4.3	37	66	18	88	45	1	4	48	1.34
51588495--51588900	120	3.4	120	94	1	690	43	1	5	49	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51588846--51588880	18	2.0	17	88	5	52	45	0	0	54	0.99
51589037--51589133	45	2.2	45	85	5	126	34	28	5	31	1.79
51589113--51589161	16	3.1	16	90	0	80	22	34	4	38	1.73
51590318--51590384	31	2.2	31	94	0	116	40	13	4	41	1.64
51592332--51592379	19	2.5	19	89	0	78	27	6	31	35	1.82
51599683--51599734	25	2.1	25	96	0	95	46	1	25	26	1.63
51600582--51600714	17	7.9	17	75	5	135	19	9	27	43	1.82
51602636--51602780	38	3.8	38	85	0	200	37	17	15	29	1.91
51602636--51602816	76	2.3	76	82	6	204	35	18	16	29	1.93
51605077--51605114	9	4.2	9	93	0	58	26	10	26	36	1.89
51606748--51606777	7	4.3	7	100	0	60	60	0	0	40	0.97
51607653--51607678	7	3.7	7	100	0	52	15	0	0	84	0.62
51610554--51610835	140	2.0	140	99	0	555	38	9	13	39	1.77
51612492--51612563	21	3.5	20	76	12	67	65	5	1	27	1.23
51612489--51612688	10	20.3	10	69	15	91	62	4	3	31	1.29
51612635--51612688	21	2.7	21	82	5	58	64	1	1	31	1.14
51613121--51613299	9	19.0	9	68	16	62	33	2	3	60	1.27
51613140--51613266	27	4.6	26	75	15	96	37	2	3	57	1.27
51613159--51613265	46	2.3	47	79	10	105	37	0	2	58	1.19
51613171--51613304	27	4.8	26	73	18	94	35	0	4	59	1.23
51616019--51616054	12	3.0	12	91	0	63	38	11	0	50	1.38
51616127--51616169	23	2.0	21	86	13	61	25	18	0	55	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51616134--51616178	22	2.0	23	82	4	56	22	26	0	51	1.49
51616344--51616369	5	5.2	5	100	0	52	42	0	0	57	0.98
51617358--51617382	12	2.1	12	100	0	50	8	16	0	76	1.02
51618193--51618274	6	12.8	6	72	23	53	76	0	17	6	0.97
51618194--51618290	5	19.4	5	71	17	51	75	0	18	6	1.01
51618190--51618274	13	6.5	13	68	20	61	76	0	17	5	0.98
51618194--51618290	9	9.7	10	70	15	51	75	0	18	6	1.01
51618190--51618300	28	3.7	30	74	10	95	74	0	18	7	1.03
51623762--51623818	20	2.9	19	84	7	78	73	3	1	21	1.07
51624279--51624418	38	3.6	38	92	3	219	32	2	0	65	1.08
51625780--51625827	19	2.5	20	76	10	55	58	0	2	39	1.10
51627003--51627051	22	2.2	23	88	3	73	48	2	2	46	1.25
51627000--51627057	22	2.9	21	73	16	61	46	3	3	46	1.36
51627106--51627186	18	4.5	19	64	22	57	40	2	8	48	1.47
51627046--51627285	112	2.1	112	91	1	383	40	7	7	45	1.60
51627283--51627308	6	4.3	6	100	0	52	15	0	46	38	1.46
51627344--51627391	21	2.3	21	100	0	96	22	0	35	41	1.54
51627333--51627364	15	2.1	15	100	0	64	25	0	25	50	1.50
51627291--51627498	89	2.3	91	85	5	276	21	1	33	43	1.62
51627285--51627501	95	2.3	93	85	10	307	21	1	33	43	1.61
51627333--51627534	33	6.2	33	73	18	147	22	1	33	43	1.62
51627365--51627591	68	3.5	67	72	17	242	22	1	34	42	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51627422--51627478	15	4.0	15	74	21	68	24	0	31	43	1.54
51627433--51627492	27	2.2	27	96	0	111	21	1	38	38	1.64
51627359--51627627	128	2.1	126	92	2	441	21	1	34	42	1.62
51627433--51627523	27	3.1	27	80	17	110	24	1	37	37	1.63
51627550--51627581	15	2.1	15	100	0	64	25	0	25	50	1.50
51627561--51627616	25	2.2	26	87	12	80	23	0	39	37	1.55
51627481--51627659	93	1.9	94	89	5	283	20	1	34	44	1.59
51627694--51627747	12	4.3	12	77	13	56	53	0	0	46	1.00
51627697--51627760	7	9.4	7	85	14	82	53	0	0	46	1.00
51627711--51627767	26	2.2	26	90	6	89	54	0	0	45	0.99
51627697--51627749	19	2.8	19	100	0	106	52	0	0	47	1.00
51628928--51628960	7	4.7	7	100	0	66	57	15	0	27	1.38
51630097--51630196	51	2.0	50	86	7	139	45	2	27	26	1.65
51630158--51630218	11	5.5	11	81	11	72	42	1	32	22	1.64
51630158--51630218	22	2.8	22	85	9	81	42	1	32	22	1.64
51630156--51630218	33	1.9	33	87	12	94	42	1	31	23	1.64
51631005--51631059	28	2.0	28	96	0	101	34	23	7	34	1.83
51633183--51633214	15	2.1	16	88	11	50	53	21	3	21	1.60
51639125--51639419	95	3.1	95	78	3	308	35	20	16	26	1.94
51639928--51639970	21	2.2	19	83	8	50	37	6	0	55	1.27
51641538--51641639	36	2.7	36	83	6	114	33	25	18	22	1.97
51641625--51641751	36	3.6	35	71	10	96	35	21	22	21	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51655108--51655142	14	2.4	15	90	9	63	34	0	0	65	0.93
51655116--51655151	14	2.6	14	90	0	54	36	0	0	63	0.94
51662527--51662562	18	2.0	18	100	0	72	27	27	16	27	1.97
51664269--51664316	21	2.3	21	78	7	53	50	14	14	20	1.78
51664646--51664721	39	1.9	39	91	0	125	32	21	17	28	1.95
51664752--51664785	12	2.7	13	86	9	52	44	0	5	50	1.26
51664759--51664785	12	2.2	12	100	0	54	44	0	7	48	1.31
51664874--51664927	25	2.1	26	86	3	74	9	16	3	70	1.28
51665262--51665294	3	11.0	3	100	0	66	66	0	0	33	0.92
51671535--51671572	18	2.2	18	86	9	53	68	0	7	23	1.16

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221