genome.fa.s26.2.7.7.80.10.50.1000.119.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Length:  64892201

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   

This is table  119  of  221  ( 26413 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36491660--36491718	22	2.7	22	78	0	64	66	6	8	18	1.41
36491702--36491732	11	2.8	11	95	0	53	77	6	6	9	1.12
36495208--36495355	50	3.1	47	71	10	145	56	9	6	27	1.57
36495163--36495359	97	2.0	98	90	3	308	53	8	8	29	1.60
36496301--36496325	12	2.1	12	100	0	50	24	0	0	76	0.80
36501511--36501831	46	7.0	46	89	1	457	47	17	11	23	1.80
36501539--36501831	137	2.1	138	93	0	498	48	17	10	22	1.78
36509479--36509549	25	3.0	25	77	6	76	25	25	15	33	1.95
36509508--36509571	22	2.9	22	77	13	60	20	25	17	37	1.93
36518118--36518176	20	2.9	21	82	5	75	40	18	28	11	1.86
36518116--36518176	21	3.0	21	80	4	79	40	18	27	13	1.87
36525178--36525234	30	1.9	30	85	0	78	29	14	22	33	1.93
36525177--36525245	30	2.3	29	80	7	75	31	13	24	30	1.93
36529245--36529322	41	1.9	41	89	0	120	47	11	16	24	1.80
36531280--36531340	22	2.8	22	78	9	63	37	6	9	45	1.63
36533544--36533599	21	2.7	21	82	0	76	25	5	37	32	1.78
36538251--36538303	23	2.4	22	76	20	56	9	18	1	69	1.25
36550506--36550580	25	3.0	24	83	9	89	32	17	29	21	1.96
36550638--36550715	25	3.1	25	78	7	79	41	17	20	20	1.91
36555408--36555438	16	1.9	16	93	0	53	19	12	25	41	1.87
36563550--36563584	16	2.2	16	89	0	52	42	2	20	34	1.66
36568794--36568819	13	2.0	13	100	0	52	23	0	15	61	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36571125--36571158	16	2.1	16	88	0	50	41	2	20	35	1.68
36571658--36571913	128	2.0	128	97	1	487	33	5	18	42	1.74
36577669--36577760	24	3.8	25	70	18	70	36	22	23	16	1.94
36585344--36585461	25	4.8	25	68	11	82	33	18	25	22	1.96
36585524--36585595	27	2.7	26	80	4	90	38	20	25	15	1.92
36586879--36586939	25	2.4	25	94	2	104	54	0	3	42	1.17
36597959--36598027	5	13.0	5	74	17	59	40	2	17	39	1.64
36597959--36598021	22	2.9	22	71	17	58	41	3	15	39	1.64
36597959--36598061	54	1.9	54	82	7	129	37	5	16	39	1.73
36601581--36601638	20	3.0	20	87	2	73	70	0	22	6	1.10
36602098--36602128	3	10.3	3	92	0	53	3	64	0	32	1.09
36624244--36624294	23	2.2	23	92	0	84	27	9	21	41	1.84
36624675--36625056	70	5.5	70	85	0	449	30	23	18	26	1.98
36624675--36625056	140	2.7	140	87	0	541	30	23	18	26	1.98
36638609--36638700	25	3.8	24	80	7	87	39	22	22	15	1.92
36642233--36642439	57	3.6	57	82	3	238	40	13	19	27	1.88
36642449--36642677	69	3.3	68	90	2	341	20	19	25	35	1.95
36642482--36642711	69	3.3	68	90	3	336	21	20	24	33	1.97
36645748--36645774	12	2.2	12	100	0	54	44	22	18	14	1.86
36649801--36649830	15	1.9	16	93	6	53	23	3	0	73	0.98
36652285--36652315	15	2.1	15	100	0	62	22	32	6	38	1.80
36656631--36656661	15	2.1	15	100	0	62	22	32	6	38	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36657144--36657216	37	2.0	37	83	5	94	28	19	8	43	1.79
36658491--36658520	2	15.0	2	92	0	51	0	46	3	50	1.18
36670155--36670220	30	2.2	31	76	15	75	28	6	3	62	1.34
36671736--36671771	18	2.0	18	100	0	72	22	27	11	38	1.88
36671737--36671778	18	2.3	18	91	0	66	21	28	7	42	1.79
36672812--36672849	19	2.0	19	100	0	76	52	5	0	42	1.24
36687206--36687243	17	2.2	17	100	0	76	13	28	10	47	1.76
36689406--36689441	15	2.3	15	90	4	54	38	16	0	44	1.48
36691690--36691756	26	2.5	27	78	9	66	29	17	28	23	1.97
36691709--36691775	27	2.5	26	78	4	71	28	17	31	22	1.97
36709418--36709450	17	1.9	17	88	11	50	42	0	6	51	1.26
36710262--36710427	31	5.4	31	75	11	171	42	2	3	51	1.32
36710260--36710430	61	2.8	61	92	0	288	42	2	3	51	1.31
36726393--36726417	13	1.9	13	100	0	50	48	16	0	36	1.46
36726428--36726481	25	2.2	25	83	6	65	27	22	7	42	1.80
36731421--36731603	79	2.3	81	83	7	223	24	21	27	25	1.99
36731421--36731603	40	4.6	40	82	9	205	24	21	27	25	1.99
36731474--36731635	79	2.1	79	83	6	204	26	20	27	25	1.99
36752312--36752351	19	2.1	19	86	9	55	37	5	0	57	1.21
36759157--36759186	12	2.5	12	94	0	51	6	30	40	23	1.80
36760857--36760899	21	2.0	21	91	8	70	44	18	4	32	1.71
36769745--36769774	16	1.9	16	93	6	53	30	0	20	50	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36773026--36773062	11	3.4	11	100	0	74	40	0	8	51	1.32
36778450--36778565	50	2.3	50	83	2	144	28	23	18	29	1.98
36778450--36778560	25	4.4	25	77	8	100	27	23	19	29	1.98
36784566--36785072	47	10.6	47	91	3	780	32	8	29	29	1.87
36784566--36785072	145	3.5	143	92	2	820	32	8	29	29	1.87
36784566--36785068	192	2.6	192	93	1	839	32	8	29	29	1.87
36788714--36788754	20	2.1	20	86	4	57	56	4	19	19	1.60
36792307--36792337	15	2.1	15	100	0	62	19	16	25	38	1.92
36793021--36793054	6	5.3	6	86	13	50	67	2	0	29	1.05
36793374--36793452	40	2.0	40	100	0	158	24	15	25	35	1.94
36812537--36812659	55	2.2	56	86	2	167	25	13	28	33	1.93
36812562--36812659	28	3.5	28	92	1	153	25	13	28	32	1.93
36812562--36812672	28	4.0	27	87	3	116	27	12	26	33	1.92
36820178--36820220	18	2.4	18	81	14	61	46	4	9	39	1.57
36820690--36820787	28	3.5	28	87	1	126	25	13	27	33	1.93
36820690--36820800	28	4.0	27	82	3	89	27	12	25	34	1.92
36830170--36830203	17	2.1	17	88	5	52	76	11	0	11	1.02
36832960--36833010	22	2.4	21	87	6	68	43	0	0	56	0.99
36832981--36833170	61	3.0	63	83	7	249	42	2	4	50	1.37
36837553--36837638	29	3.0	29	84	0	109	55	12	11	19	1.67
36839016--36839083	30	2.2	30	84	2	82	33	16	2	47	1.62
36839476--36839525	23	2.1	24	82	10	59	70	18	8	4	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36839521--36839571	14	3.7	14	78	2	50	74	1	21	1	1.02
36841169--36841346	27	6.6	27	82	3	178	29	28	15	26	1.96
36848776--36848926	27	5.6	27	81	4	160	29	28	15	26	1.96
36848776--36848926	55	2.8	56	82	5	175	29	28	15	26	1.96
36851191--36851225	18	1.9	18	100	0	70	22	11	11	54	1.68
36851349--36851855	17	27.4	18	67	19	181	33	13	9	43	1.76
36851349--36851856	18	27.4	18	68	18	139	33	13	9	43	1.76
36851358--36851481	52	2.4	51	82	10	135	32	15	9	42	1.79
36851542--36851674	37	3.6	36	75	9	119	32	15	10	42	1.81
36851695--36851857	19	8.7	20	72	20	120	38	9	9	42	1.69
36851603--36851757	84	1.9	81	82	8	195	34	9	10	45	1.71
36853723--36853783	30	2.0	30	96	0	113	40	14	22	21	1.90
36860608--36860679	1	72.0	1	71	0	54	86	5	6	1	0.77
36860605--36860660	8	6.9	8	84	11	69	87	8	3	0	0.65
36860608--36860660	17	3.2	17	89	7	74	88	7	3	0	0.61
36860605--36860679	25	3.0	25	86	5	91	85	6	6	1	0.80
36861523--36862274	75	9.8	76	83	9	861	26	16	21	34	1.95
36861523--36862274	154	4.9	150	85	8	894	26	16	21	34	1.95
36862744--36862907	30	5.6	28	73	14	100	31	20	6	41	1.78
36862833--36862901	29	2.4	29	85	0	84	36	20	5	37	1.77
36863223--36863275	26	2.0	26	82	7	63	71	16	9	1	1.21
36863860--36863908	21	2.2	23	85	7	66	12	2	4	81	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36863860--36863909	16	3.2	16	75	5	50	12	2	4	82	0.90
36864177--36864494	17	17.7	17	68	17	162	33	14	10	42	1.79
36864180--36864494	18	17.5	18	68	15	163	33	14	9	42	1.78
36864177--36864509	37	9.2	37	72	17	188	32	14	10	42	1.80
36864530--36864601	21	3.7	20	72	25	73	43	6	11	38	1.67
36864543--36864669	17	7.2	16	70	21	69	37	7	11	44	1.69
36864533--36864652	37	3.3	37	78	13	124	37	8	10	43	1.70
36864543--36864651	16	6.1	18	77	13	109	36	8	11	43	1.72
36864584--36864671	35	2.5	37	83	9	112	34	9	10	46	1.69
36864543--36864690	18	8.2	18	72	18	94	39	8	10	42	1.68

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221