genome.fa.s26.2.7.7.80.10.50.1000.193.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Length:  64892201

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   

This is table  193  of  221  ( 26413 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56663366--56663403	19	2.0	20	89	5	60	60	0	0	39	0.97
56682499--56682595	26	3.7	25	74	8	86	58	6	7	27	1.49
56684502--56684558	17	3.4	16	80	9	69	63	3	3	29	1.28
56685675--56685714	21	1.9	21	84	0	53	72	0	10	17	1.11
56685975--56686012	15	2.5	15	86	0	58	47	2	0	50	1.15
56688133--56688239	53	2.0	53	94	0	187	31	7	17	42	1.77
56689497--56689547	13	3.9	13	81	0	66	33	5	23	37	1.79
56697168--56697220	5	10.6	5	80	15	65	18	1	1	77	0.96
56697168--56697269	10	10.8	9	70	19	57	21	2	1	73	1.06
56697163--56697220	30	1.9	30	89	6	91	17	3	1	77	0.99
56697163--56697209	15	3.2	15	80	14	62	14	4	2	78	0.99
56697172--56697344	12	14.9	12	68	18	57	23	4	3	69	1.21
56697165--56697275	29	3.8	30	71	16	83	20	3	1	73	1.07
56697177--56697275	25	4.0	22	73	20	72	21	3	2	73	1.07
56697376--56697428	6	8.8	6	89	0	52	7	11	3	77	1.10
56697377--56697427	18	2.9	18	82	2	59	7	11	3	76	1.13
56698421--56698447	10	2.7	10	100	0	54	92	0	0	7	0.38
56699285--56699346	30	2.1	30	93	0	106	22	38	27	11	1.88
56702599--56702891	43	6.8	43	83	5	286	26	27	18	26	1.98
56702599--56702891	86	3.4	86	82	5	331	26	27	18	26	1.98
56702599--56702886	129	2.2	129	81	5	323	27	28	18	26	1.98
56703184--56703221	19	2.0	19	94	0	67	57	2	10	28	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56703350--56703513	66	2.5	66	85	4	206	14	29	18	38	1.89
56708884--56709300	9	46.7	9	69	18	164	33	2	17	46	1.62
56708966--56709007	22	1.9	22	90	0	66	38	2	11	47	1.53
56708991--56709088	34	2.9	34	90	0	142	30	0	20	48	1.50
56708988--56709207	25	8.4	27	70	17	119	31	0	19	48	1.55
56709036--56709193	43	3.6	43	71	17	128	31	1	19	47	1.58
56709094--56709207	34	3.2	37	80	10	107	32	0	18	49	1.48
56709146--56709218	34	2.1	34	84	0	92	28	1	20	49	1.57
56709252--56709326	32	2.3	33	88	4	107	34	4	16	45	1.66
56709481--56709575	33	3.2	33	65	30	95	47	11	5	35	1.62
56709494--56709542	22	2.2	22	85	0	62	51	10	4	34	1.55
56709504--56709552	22	2.2	22	89	7	73	48	6	6	38	1.53
56709481--56709596	55	2.1	55	98	0	223	47	10	6	36	1.62
56709549--56709597	22	2.2	22	77	0	53	46	12	6	34	1.66
56709561--56709636	39	2.0	39	85	12	104	51	5	3	39	1.43
56710065--56710140	39	2.0	38	87	5	109	31	14	18	35	1.91
56710318--56710347	14	2.1	14	100	0	60	53	6	13	26	1.64
56711414--56711498	42	2.0	42	100	0	170	23	23	7	45	1.77
56711626--56711671	16	2.9	16	76	0	56	23	17	43	15	1.87
56712232--56712273	20	2.1	20	86	8	59	14	4	4	76	1.12
56712189--56712243	28	2.0	28	92	0	92	34	3	7	54	1.46
56712911--56712955	19	2.3	20	85	14	67	48	4	0	46	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56713248--56714298	375	2.8	376	91	4	1677	43	21	4	30	1.73
56714164--56714207	23	1.9	23	81	9	54	54	9	2	34	1.44
56714285--56714313	15	1.9	15	100	0	58	37	48	0	13	1.43
56715008--56715095	41	2.2	40	87	8	124	47	29	11	11	1.74
56715006--56715251	124	2.0	124	79	4	264	39	28	15	15	1.89
56715292--56715368	40	1.9	39	81	2	91	23	16	14	45	1.84
56716357--56716402	22	2.1	21	84	11	58	36	2	4	56	1.31
56716430--56716610	53	3.7	53	72	21	185	48	7	3	39	1.50
56716444--56716627	93	2.0	93	95	0	332	48	7	4	39	1.53
56716546--56716619	16	4.1	18	69	22	57	48	8	4	39	1.52
56716672--56716731	22	2.6	23	86	5	77	50	3	1	45	1.28
56718528--56718666	75	1.9	75	84	0	188	33	16	21	28	1.95
56718508--56718682	75	2.3	74	76	5	172	33	17	23	25	1.96
56718598--56719047	114	3.9	114	76	8	407	31	19	24	25	1.98
56718598--56719215	229	2.7	229	80	5	585	30	19	23	27	1.98
56719524--56719580	7	8.0	7	78	3	51	17	0	36	45	1.49
56720628--56720726	44	2.2	44	92	0	162	21	35	10	33	1.87
56722964--56723025	3	20.3	3	75	15	56	61	4	1	32	1.27
56722965--56723023	19	3.0	20	76	13	68	62	5	1	30	1.26
56722965--56723025	14	4.7	13	77	15	56	62	4	1	31	1.26
56722964--56723024	11	5.9	10	78	16	54	62	4	1	31	1.26
56725317--56725403	44	2.0	44	90	0	138	13	14	18	52	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56726152--56726178	3	9.0	3	100	0	54	0	33	0	66	0.92
56727048--56727087	20	2.1	19	90	4	62	25	2	27	45	1.66
56727417--56727449	17	1.9	17	100	0	66	24	6	21	48	1.72
56734300--56734542	50	4.8	50	87	0	342	21	30	22	25	1.99
56734879--56734935	30	1.9	29	85	3	78	29	24	3	42	1.71
56736792--56736846	27	2.0	27	100	0	110	29	29	10	30	1.91
56738103--56738144	18	2.3	18	88	8	59	73	4	0	21	1.01
56738080--56738144	6	10.7	6	70	9	51	73	3	4	18	1.13
56740290--56740328	20	1.9	21	89	5	62	48	5	20	25	1.70
56743472--56743532	26	2.5	24	82	12	79	40	1	0	57	1.08
56743539--56743592	22	2.5	22	96	0	99	46	0	3	50	1.19
56759157--56759297	39	3.7	36	78	11	122	44	12	1	41	1.51
56759204--56759294	18	4.9	18	75	19	89	46	13	0	40	1.43
56759186--56759244	31	1.9	31	89	6	93	42	13	0	44	1.44
56759204--56759264	17	3.5	17	86	4	86	44	13	0	42	1.43
56759630--56760067	153	3.0	151	85	7	603	53	6	8	31	1.57
56760459--56760487	12	2.4	12	100	0	58	48	10	0	41	1.37
56760483--56760620	9	16.0	9	66	17	78	47	18	1	32	1.58
56760490--56760560	20	3.9	18	75	17	76	53	16	0	29	1.44
56760489--56760566	16	4.5	16	77	16	84	51	17	0	30	1.46
56760546--56760788	41	6.1	41	72	17	158	49	16	0	32	1.52
56760483--56760633	25	6.2	25	68	16	95	47	19	1	32	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56760619--56760691	21	3.4	21	73	14	76	52	15	0	32	1.43
56760643--56760781	16	8.3	16	68	21	63	53	15	0	30	1.47
56760607--56760772	44	3.6	44	82	12	215	51	15	0	32	1.47
56760652--56760805	51	2.8	51	83	15	202	53	14	0	31	1.46
56760755--56760788	16	2.1	16	94	0	59	50	20	0	29	1.49
56762835--56762903	16	4.2	16	92	3	120	24	1	37	36	1.65
56762835--56762903	33	2.1	32	94	2	120	24	1	37	36	1.65
56762884--56762974	45	2.0	45	85	2	121	27	6	28	37	1.82
56763139--56763173	18	2.0	17	88	5	52	54	0	0	45	0.99
56763122--56763624	120	4.2	120	97	0	961	48	5	2	44	1.38
56763379--56763413	18	2.0	17	88	5	52	54	0	0	45	0.99
56763952--56764011	18	3.4	18	64	13	52	40	10	6	43	1.64
56765525--56765590	33	2.0	33	100	0	132	42	18	27	12	1.85
56765690--56765765	33	2.3	33	97	0	143	35	5	15	43	1.70
56765808--56765889	37	2.2	37	91	0	128	35	8	15	40	1.78
56775589--56775634	22	2.1	22	83	0	56	58	0	4	36	1.18
56775695--56775734	18	2.2	19	86	4	55	35	2	32	30	1.71
56782090--56782131	19	2.2	19	83	8	50	50	16	16	16	1.79
56782454--56782510	27	2.1	27	93	0	96	47	22	5	24	1.72
56782453--56782506	18	3.0	18	86	0	72	48	24	3	24	1.67
56782453--56782506	9	6.0	9	80	0	63	48	24	3	24	1.67
56782594--56782622	6	4.8	6	100	0	58	17	0	17	65	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56782579--56782635	18	2.9	20	82	12	64	22	3	12	61	1.46
56785566--56785619	25	2.1	26	83	10	67	50	3	14	31	1.61
56788997--56789034	20	1.9	20	88	0	58	60	0	5	34	1.19
56796530--56796559	12	2.6	12	94	5	53	70	10	10	10	1.36
56799966--56800021	19	3.1	19	82	10	64	33	0	8	57	1.30
56804106--56804134	3	9.7	3	100	0	58	68	0	31	0	0.89
56804141--56804222	3	27.3	3	92	0	137	29	0	37	32	1.58
56804310--56804400	42	2.2	42	98	2	175	49	10	20	18	1.78
56807599--56807701	51	2.0	51	96	3	190	45	18	7	28	1.77
56807647--56807757	33	3.4	34	80	13	106	43	18	8	30	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221