genome.fa.s26.2.7.7.80.10.50.1000.156.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Length:  64892201

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   

This is table  156  of  221  ( 26413 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47278351--47278412	26	2.3	26	94	2	106	38	19	29	12	1.89
47280091--47280143	24	2.2	24	82	0	61	11	11	24	52	1.70
47282578--47282639	31	2.0	31	100	0	124	45	3	9	41	1.53
47283862--47283894	16	2.1	17	88	11	52	33	15	0	51	1.43
47290472--47290606	41	3.3	41	94	0	234	27	25	19	28	1.99
47291092--47291254	76	2.1	76	78	2	166	42	16	4	36	1.68
47294005--47294140	47	2.9	47	89	1	200	24	23	19	33	1.97
47294109--47294277	91	1.9	91	82	2	214	28	21	16	33	1.95
47300216--47300248	13	2.4	14	85	15	50	36	12	6	45	1.66
47300222--47300247	13	2.0	13	100	0	52	30	15	7	46	1.74
47307974--47308043	3	23.3	3	97	0	131	65	32	1	0	1.01
47310924--47310983	28	2.1	28	90	0	93	26	16	28	28	1.97
47311083--47311133	26	2.0	26	92	0	84	33	23	25	17	1.96
47311326--47311432	27	3.9	27	86	3	142	21	18	19	40	1.92
47311425--47311486	27	2.3	27	94	0	106	17	14	24	43	1.86
47315811--47315947	41	3.3	41	83	2	159	32	24	24	18	1.97
47315756--47315940	82	2.3	82	78	3	194	35	21	22	21	1.96
47316680--47316705	12	2.2	12	100	0	52	46	23	23	7	1.78
47344157--47344290	50	2.9	44	82	13	178	36	2	20	40	1.68
47344446--47344493	10	4.6	10	77	10	51	45	6	6	41	1.54
47344445--47344510	32	2.1	32	82	5	80	50	4	6	39	1.48
47344874--47344913	3	13.3	3	94	0	71	37	0	0	62	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47348570--47348675	21	5.0	21	69	0	77	42	17	24	15	1.88
47348528--47348684	42	3.8	41	79	3	143	44	17	22	14	1.86
47352616--47352664	3	16.7	3	91	4	82	65	32	2	0	1.04
47357322--47357357	3	12.0	3	100	0	72	66	0	0	33	0.92
47360630--47360835	43	4.8	43	94	0	358	29	33	17	19	1.95
47361031--47361090	18	3.4	18	64	13	52	40	10	6	43	1.64
47367267--47367319	7	7.6	7	89	0	79	32	49	0	18	1.48
47367280--47367456	90	2.0	88	82	4	212	42	31	1	24	1.62
47367367--47367405	20	2.0	19	90	5	60	38	46	0	15	1.46
47367813--47367842	7	4.3	7	95	0	51	36	0	30	33	1.58
47368026--47368392	41	9.0	41	89	1	529	27	26	23	21	1.99
47369779--47369803	12	2.1	12	100	0	50	28	32	8	32	1.86
47370979--47371946	28	33.9	28	82	10	1067	46	23	1	28	1.60
47371367--47371440	23	3.2	23	86	0	76	44	24	4	27	1.71
47371426--47371455	7	4.3	7	100	0	60	46	40	0	13	1.43
47371862--47371988	23	5.3	23	71	12	94	44	25	1	28	1.63
47371911--47371950	18	2.2	18	86	0	53	47	22	0	30	1.52
47372168--47372226	27	2.2	27	100	0	118	37	6	13	42	1.71
47375221--47375462	125	1.9	124	85	5	337	33	23	14	28	1.94
47375778--47375838	28	2.2	28	82	11	72	42	18	13	26	1.86
47377972--47378680	357	2.0	358	95	1	1271	36	16	10	36	1.83
47399931--47400019	43	2.1	43	86	0	124	46	2	23	28	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47400124--47400246	50	2.7	44	78	14	147	37	3	20	39	1.69
47400124--47400271	50	3.1	49	75	21	113	36	3	20	39	1.70
47400412--47400459	10	4.6	10	82	10	60	50	6	2	41	1.39
47400422--47400468	22	2.1	23	96	4	87	53	4	2	40	1.32
47400411--47400476	32	2.1	32	88	5	98	53	4	3	39	1.37
47400800--47400830	3	10.3	3	100	0	62	35	0	0	64	0.94
47403291--47403333	17	2.4	18	84	7	61	13	18	6	60	1.55
47404472--47404515	18	2.6	17	85	7	54	61	2	9	27	1.38
47412798--47412830	3	11.0	3	100	0	66	66	0	0	33	0.92
47415974--47416008	3	11.7	3	93	0	61	71	28	0	0	0.86
47417813--47417856	18	2.6	17	85	7	54	61	2	9	27	1.38
47428852--47428920	35	1.9	36	85	2	95	36	4	28	30	1.77
47432152--47432201	20	2.3	23	83	13	70	56	0	0	44	0.99
47433223--47433266	24	1.9	23	86	9	63	54	0	0	45	0.99
47433568--47433669	28	3.5	29	82	9	102	54	0	2	42	1.15
47433609--47433678	31	2.3	31	92	0	113	51	1	7	40	1.38
47433486--47433799	158	2.0	157	93	0	538	51	3	4	40	1.39
47433621--47433687	31	2.2	31	86	0	89	52	2	7	37	1.45
47433725--47433793	28	2.5	27	79	9	68	55	0	1	43	1.08
47437452--47437490	21	1.9	21	85	15	55	51	15	15	17	1.77
47438921--47439264	51	6.8	51	79	7	324	29	14	25	30	1.95
47438921--47439258	102	3.3	102	87	2	423	29	14	25	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47439455--47439527	38	1.9	37	86	8	103	42	1	23	32	1.63
47454123--47454154	16	1.9	17	93	6	57	37	21	0	40	1.54
47454314--47454430	41	2.8	42	80	8	139	31	28	17	23	1.96
47476705--47476810	21	5.0	21	69	0	77	42	17	24	15	1.88
47476663--47476819	42	3.8	41	77	3	134	45	16	22	14	1.84
47477802--47477836	3	11.7	3	93	0	52	62	31	5	0	1.18
47483736--47483767	16	1.9	17	93	6	57	37	18	0	43	1.51
47483928--47484083	84	1.9	84	86	8	228	29	29	19	21	1.98
47483928--47484084	43	3.7	42	78	16	180	29	29	19	21	1.98
47502677--47502724	10	4.6	10	82	10	60	50	6	2	41	1.39
47502687--47502733	22	2.1	23	96	4	87	53	4	2	40	1.32
47502676--47502741	32	2.1	32	88	5	98	53	4	3	39	1.37
47514875--47514943	35	1.9	36	85	2	95	36	4	28	30	1.77
47518202--47518250	20	2.3	22	82	6	66	55	0	0	44	0.99
47519273--47519316	24	1.9	23	86	9	63	54	0	0	45	0.99
47519618--47519719	28	3.5	29	82	9	102	54	0	2	42	1.15
47519659--47519728	31	2.3	31	92	0	113	51	1	7	40	1.38
47519536--47519849	158	2.0	157	93	0	538	51	3	4	40	1.39
47519671--47519737	31	2.2	31	86	0	89	52	2	7	37	1.45
47519775--47519843	28	2.5	27	79	9	68	55	0	1	43	1.08
47523503--47523541	21	1.9	21	85	15	55	51	15	15	17	1.77
47524978--47525321	51	6.8	51	79	7	324	29	14	25	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47524978--47525315	102	3.3	102	87	2	423	29	14	25	30	1.95
47525512--47525584	38	1.9	37	86	8	103	42	1	23	32	1.63
47530269--47530456	51	3.7	51	81	4	227	24	13	27	35	1.92
47530271--47530464	102	1.9	102	87	2	282	24	13	27	34	1.93
47534394--47534448	27	2.0	27	96	0	101	38	14	16	30	1.89
47537883--47538008	61	2.1	61	100	0	252	39	26	7	26	1.83
47538652--47538701	26	1.9	26	100	0	100	58	2	16	24	1.49
47546394--47546441	19	2.6	19	77	6	55	22	33	41	2	1.66
47548318--47548379	31	2.0	31	100	0	124	25	16	6	51	1.68
47553576--47553658	6	14.5	6	82	12	88	16	1	2	79	0.90
47553562--47553684	27	4.5	27	75	14	101	19	1	3	75	1.02
47553562--47553632	5	13.6	5	88	8	90	19	0	0	80	0.72
47557024--47557087	33	1.9	33	87	6	94	45	3	4	46	1.39
47559211--47559301	28	3.3	27	76	14	78	59	1	5	34	1.28
47559211--47559301	29	3.3	27	69	17	69	59	1	5	34	1.28
47567755--47567797	14	3.1	14	83	3	52	53	0	2	44	1.13
47568041--47568073	17	1.9	17	93	0	57	48	9	9	33	1.66
47572626--47572889	135	2.0	132	88	2	393	28	21	18	31	1.97
47577907--47577944	3	12.7	3	100	0	76	0	34	0	65	0.93
47578760--47578830	19	3.7	19	78	10	65	40	4	0	54	1.20
47578944--47579020	19	4.3	16	75	21	57	32	2	1	63	1.16
47578939--47579020	9	8.9	9	72	22	64	34	2	1	62	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47578940--47579021	17	4.6	19	74	19	70	34	2	1	62	1.16
47588292--47588752	230	2.0	230	95	0	823	34	19	16	29	1.93
47589012--47589040	5	5.8	5	100	0	58	79	20	0	0	0.74
47598758--47598822	20	3.2	21	73	8	62	46	1	4	47	1.32
47599654--47599687	14	2.5	13	86	9	50	44	2	8	44	1.50
47602437--47602485	24	2.0	25	84	11	66	32	0	4	63	1.13
47604090--47604165	23	3.3	23	88	0	116	21	21	27	30	1.98
47615186--47615718	44	11.9	45	73	18	411	27	21	19	32	1.97
47615216--47615287	35	2.1	35	100	0	144	27	18	19	34	1.95
47615288--47615777	94	5.3	94	81	7	518	26	21	20	31	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221