genome.fa.s26.2.7.7.80.10.50.1000.197.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Length:  64892201

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   

This is table  197  of  221  ( 26413 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57629930--57629958	5	5.8	5	100	0	58	17	0	0	82	0.66
57630447--57630534	23	3.5	24	79	13	88	36	1	7	54	1.37
57632643--57632689	25	1.9	25	87	12	71	27	6	2	63	1.30
57633963--57634013	21	2.4	21	80	0	57	27	23	31	17	1.97
57646609--57646642	5	6.8	5	100	0	68	20	0	58	20	1.39
57647791--57647830	21	2.0	20	85	5	53	52	15	2	30	1.55
57648280--57648304	7	3.6	7	100	0	50	56	0	0	44	0.99
57648441--57648476	19	1.9	18	88	5	54	50	0	0	50	1.00
57648448--57648500	13	4.1	13	75	15	56	47	0	1	50	1.12
57648458--57648509	26	2.0	27	96	3	97	42	0	1	55	1.10
57653878--57653910	11	2.9	12	86	13	52	33	0	0	66	0.92
57654032--57654093	30	2.1	30	87	0	88	53	12	4	29	1.59
57654965--57655002	20	2.0	19	85	10	51	47	2	0	50	1.15
57656980--57657013	14	2.4	14	85	0	50	67	5	2	23	1.26
57663241--57663288	24	2.0	25	83	4	62	27	2	8	62	1.35
57663823--57663863	17	2.4	17	95	0	73	36	34	0	29	1.58
57667459--57667633	21	8.3	21	83	8	205	45	17	21	15	1.85
57667459--57667635	63	2.8	64	85	7	229	45	16	22	15	1.84
57668338--57668460	42	2.9	42	85	0	147	17	20	14	47	1.83
57668331--57668457	21	6.0	21	74	2	103	17	19	15	47	1.83
57672136--57672177	23	1.9	23	85	9	61	40	0	2	57	1.12
57672274--57672301	9	3.1	9	100	0	56	57	10	0	32	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57672243--57672444	59	3.1	68	84	13	309	44	8	4	41	1.57
57672433--57672474	16	2.6	16	92	0	66	42	7	2	47	1.43
57674893--57674931	18	2.2	17	86	13	53	64	0	2	33	1.08
57675597--57675636	19	2.1	19	95	0	71	65	0	7	27	1.20
57675604--57675738	10	14.0	10	65	18	54	62	0	5	30	1.24
57675605--57675736	30	4.6	28	70	11	79	62	0	6	30	1.24
57675604--57675734	19	6.8	20	68	12	85	64	0	6	29	1.23
57675918--57676002	10	8.6	10	74	15	70	30	2	1	65	1.12
57675918--57675989	19	3.7	19	81	7	81	31	2	1	63	1.17
57675936--57675980	21	2.2	21	88	4	65	33	2	0	64	1.06
57675987--57676016	16	1.9	16	93	6	53	20	0	0	80	0.72
57687509--57687677	84	2.0	84	96	0	311	20	27	13	39	1.90
57689848--57689895	22	2.4	22	80	13	59	43	6	2	47	1.40
57705487--57705541	13	4.2	13	71	17	51	40	0	0	60	0.97
57705476--57705541	20	3.4	19	76	14	71	42	0	0	57	0.98
57705467--57705540	15	5.3	15	72	21	63	41	0	0	58	0.98
57717018--57717067	25	2.0	25	84	0	64	48	0	0	52	1.00
57719389--57719620	114	2.0	114	98	0	446	40	16	6	37	1.74
57719993--57720019	7	3.9	7	100	0	54	55	0	0	44	0.99
57730100--57730126	13	2.1	13	100	0	54	55	0	7	37	1.28
57740574--57740617	18	2.5	17	85	14	54	70	0	2	27	0.99
57740574--57740649	19	4.1	19	71	11	68	61	0	3	34	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57741065--57741122	11	5.2	11	87	2	80	22	32	1	43	1.64
57741065--57741140	22	3.4	23	84	14	97	25	31	1	42	1.63
57741064--57741138	33	2.2	33	84	9	98	24	32	1	42	1.63
57741064--57741140	11	6.9	11	74	21	72	24	31	1	42	1.63
57741100--57741199	51	2.0	51	86	4	139	26	26	3	45	1.68
57743614--57743734	21	5.8	21	83	3	154	46	24	1	27	1.62
57746911--57747299	124	3.1	124	89	2	611	30	23	15	30	1.96
57746911--57747350	124	3.5	124	85	4	568	30	23	16	30	1.96
57747479--57747516	16	2.4	16	86	0	58	50	26	0	23	1.50
57747466--57747534	23	2.9	25	81	12	83	52	26	0	21	1.47
57749802--57749863	31	2.0	31	87	6	90	51	4	8	35	1.53
57764885--57764914	12	2.6	12	94	5	53	23	0	6	70	1.11
57767025--57767067	14	2.9	15	83	13	54	39	6	13	39	1.72
57767051--57767096	19	2.3	20	96	3	85	23	10	17	47	1.79
57767172--57767214	18	2.4	18	92	0	68	48	2	0	48	1.14
57770706--57770735	12	2.5	12	94	0	51	43	0	10	46	1.37
57772518--57772567	25	2.0	25	92	0	82	54	0	40	6	1.25
57773327--57773410	42	2.0	41	86	2	114	23	16	26	33	1.96
57778853--57778957	48	2.2	48	82	3	131	24	14	18	42	1.87
57780138--57780205	34	2.0	34	100	0	136	17	26	17	38	1.92
57784399--57784431	17	1.9	17	88	11	50	69	15	0	15	1.19
57784399--57784432	18	1.9	17	88	5	50	70	14	0	14	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57792122--57792312	43	4.5	42	88	2	283	25	29	19	25	1.99
57794939--57795239	46	6.3	48	84	8	366	35	14	21	28	1.93
57794873--57795228	98	3.6	98	96	0	640	34	14	21	28	1.94
57795203--57795348	37	4.0	37	91	1	233	37	15	21	25	1.93
57796602--57796769	58	3.0	58	87	10	237	22	13	30	33	1.92
57796621--57796711	28	3.2	28	66	22	80	25	15	31	27	1.95
57796662--57796804	49	2.9	49	93	0	232	23	13	30	32	1.94
57799993--57800293	46	6.3	48	84	8	366	35	14	21	28	1.93
57799927--57800282	98	3.6	98	96	0	640	34	14	21	28	1.94
57800259--57800365	37	2.9	37	88	2	164	37	14	21	26	1.92
57808443--57808477	18	2.0	17	88	5	52	54	0	0	45	0.99
57808408--57808597	54	3.5	53	74	15	192	50	3	1	44	1.27
57808627--57808674	26	1.9	25	84	16	64	52	2	0	45	1.12
57808617--57808810	92	2.1	92	86	5	268	46	4	3	45	1.41
57812121--57812591	48	9.8	47	96	0	771	36	8	6	48	1.60
57812121--57812591	96	4.9	96	96	0	852	36	8	6	48	1.60
57812121--57812591	144	3.3	144	97	0	870	36	8	6	48	1.60
57813599--57813673	23	3.3	23	96	0	141	45	25	8	21	1.79
57814596--57814659	33	1.9	34	87	6	96	34	4	17	43	1.69
57814987--57815022	17	2.1	17	89	0	54	69	8	11	11	1.37
57827370--57827407	3	12.7	3	100	0	76	65	0	0	34	0.93
57828190--57828221	7	4.4	7	96	4	55	15	0	25	59	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57844770--57844794	12	2.1	12	100	0	50	8	0	32	60	1.26
57855137--57855163	13	2.1	13	100	0	54	33	14	14	37	1.88
57880575--57880677	42	2.5	42	85	7	156	40	10	23	25	1.86
57881474--57881500	3	9.0	3	100	0	54	66	0	0	33	0.92
57882768--57882871	40	2.6	40	80	3	102	28	23	16	31	1.96
57882923--57883053	40	3.3	40	83	0	163	29	22	19	29	1.98
57890598--57890666	31	2.3	31	75	7	72	42	0	1	56	1.08
57897096--57897129	2	17.0	2	100	0	68	50	50	0	0	1.00
57905862--57905913	22	2.5	20	80	14	61	23	5	0	71	1.07
57919748--57919796	25	2.0	25	91	0	80	34	4	0	61	1.15
57925740--57925779	11	3.5	11	83	6	53	37	2	0	60	1.11
57928361--57928530	41	4.1	42	78	8	161	27	25	18	28	1.98
57935915--57936077	41	4.0	40	79	11	143	26	25	19	28	1.98
57941399--57941491	44	2.1	46	87	4	136	30	4	29	36	1.77
57953777--57953805	6	4.8	6	100	0	58	0	51	13	34	1.42
57956581--57956624	21	2.1	21	100	0	88	38	9	13	38	1.77
57956580--57956635	21	2.8	19	87	10	85	37	8	16	37	1.80
57956593--57956658	23	3.0	23	82	12	77	37	6	16	39	1.74
57956624--57956668	23	2.0	23	86	4	65	33	4	15	46	1.66
57956831--57956869	19	2.0	21	85	10	55	15	10	5	69	1.34
57957076--57957147	12	6.3	11	73	13	56	29	5	2	62	1.32
57973328--57973496	93	1.8	92	83	6	225	31	9	14	44	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57975127--57975159	16	1.9	18	88	11	52	75	3	0	21	0.93
57976556--57976594	19	2.0	20	85	5	53	43	5	7	43	1.55
57977361--57977390	12	2.4	13	94	5	53	60	10	0	30	1.30
57977438--57977480	21	2.0	21	82	8	52	62	2	11	23	1.40
57977710--57977744	17	2.1	17	89	10	54	82	0	5	11	0.82
57977710--57977744	18	2.0	17	88	5	52	82	0	5	11	0.82
57977862--57977902	19	2.2	19	86	8	57	56	7	7	29	1.54
57979555--57980856	132	9.8	132	88	3	1592	27	23	19	29	1.98
57979555--57980856	266	4.9	262	86	3	1509	27	23	19	29	1.98
57981939--57981977	18	2.2	17	86	13	53	33	0	20	46	1.51

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221