genome.fa.s26.2.7.7.80.10.50.1000.218.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Length:  64892201

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   

This is table  218  of  221  ( 26413 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63672494--63672770	88	3.2	86	86	5	364	22	1	29	46	1.59
63672713--63672774	25	2.6	23	89	5	88	22	1	27	48	1.60
63672889--63673121	56	4.2	56	97	1	425	46	4	12	36	1.61
63672889--63673121	111	2.1	111	95	1	414	46	4	12	36	1.61
63673115--63673391	29	9.7	29	86	3	355	23	1	29	46	1.59
63673115--63673391	88	3.2	86	86	5	373	23	1	29	46	1.59
63672192--63674614	621	3.9	620	92	3	4071	34	4	19	42	1.70
63673334--63673395	25	2.6	23	89	5	88	22	1	27	48	1.60
63672944--63674522	565	2.8	566	87	7	2362	33	3	19	42	1.70
63673510--63673686	55	3.2	55	93	3	302	46	3	11	37	1.58
63673680--63673985	29	10.7	29	85	4	361	22	1	29	46	1.61
63673680--63673985	117	2.7	117	87	4	419	22	1	29	46	1.61
63674104--63674334	55	4.2	55	97	1	419	45	3	12	38	1.61
63673510--63674682	648	1.8	649	96	0	2163	32	3	19	43	1.69
63674336--63674633	29	10.4	29	86	5	372	20	0	30	48	1.55
63674338--63674611	117	2.3	117	90	1	415	19	0	30	48	1.54
63674576--63674642	25	2.8	24	86	8	93	23	2	25	47	1.66
63675151--63675185	18	1.9	18	88	0	52	31	8	34	25	1.86
63675837--63675875	7	5.6	7	96	0	69	61	12	0	25	1.31
63676018--63676055	20	1.9	20	84	10	51	55	7	2	34	1.43
63676986--63677109	51	2.4	51	89	2	187	43	0	25	29	1.60
63677092--63677136	11	4.0	11	91	2	63	51	0	31	17	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63677089--63677135	22	2.1	22	92	4	76	48	0	34	17	1.47
63677401--63677462	28	2.2	28	82	5	81	45	12	16	25	1.83
63686199--63686223	2	12.5	2	100	0	50	52	0	0	48	1.00
63708641--63708690	24	2.1	24	100	0	100	40	22	20	18	1.92
63710351--63710405	19	2.9	19	81	10	76	43	3	16	36	1.65
63714575--63714699	62	2.0	62	100	0	250	40	11	8	40	1.70
63717697--63718171	46	10.6	46	88	6	681	29	21	13	35	1.92
63718062--63718135	36	2.0	37	92	2	123	27	20	13	39	1.90
63718016--63718171	83	1.9	82	92	4	260	28	21	12	38	1.89
63721198--63721241	24	1.9	24	90	9	74	36	0	2	61	1.09
63721338--63721365	9	3.1	9	100	0	56	57	10	0	32	1.33
63721308--63721508	59	3.1	68	83	13	298	45	8	4	40	1.56
63721497--63721538	16	2.6	16	92	0	66	42	7	2	47	1.43
63721512--63721572	22	2.8	22	84	0	77	47	1	1	49	1.21
63730747--63730799	18	2.8	20	80	13	67	32	11	7	49	1.67
63730826--63730882	20	2.9	19	84	5	69	56	7	8	28	1.56
63730907--63730943	19	1.9	19	88	0	56	56	5	5	32	1.45
63734080--63734135	26	2.1	26	83	6	67	62	0	0	37	0.95
63735050--63735092	16	2.6	18	82	14	56	48	18	11	20	1.79
63737296--63737328	6	5.5	6	96	0	57	45	15	3	36	1.61
63740126--63740174	22	2.2	22	79	10	55	42	0	0	57	0.99
63740152--63740222	28	2.4	28	79	13	72	38	1	7	53	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63741045--63741174	65	2.0	65	90	3	208	34	12	11	41	1.79
63744431--63747211	398	7.0	398	92	1	4354	35	14	13	37	1.85
63744431--63747130	786	3.4	795	92	1	4458	35	14	13	36	1.85
63747359--63747412	28	1.9	28	92	0	90	31	18	14	35	1.91
63753173--63753197	11	2.3	11	100	0	50	32	24	0	44	1.54
63761976--63762110	40	3.4	39	78	11	150	25	17	25	31	1.97
63764200--63764246	24	2.0	23	84	12	60	29	14	4	51	1.62
63768972--63769006	12	3.0	11	91	8	52	85	2	0	11	0.69
63780643--63780965	178	1.8	172	84	9	438	28	10	14	46	1.78
63789487--63789529	4	10.8	4	100	0	86	51	25	0	23	1.49
63789705--63789732	4	7.0	4	100	0	56	50	25	0	25	1.50
63789830--63790113	110	2.5	109	83	9	356	36	21	15	26	1.94
63789551--63790110	279	1.9	278	84	9	735	37	21	15	25	1.92
63794360--63794392	11	2.9	11	95	4	57	27	0	0	72	0.85
63794528--63794571	22	2.0	21	83	12	54	22	9	2	65	1.32
63795893--63795988	48	2.0	48	93	0	165	43	8	14	33	1.75
63801307--63801346	15	2.7	15	92	0	71	25	12	27	35	1.92
63805985--63806044	24	2.4	24	83	10	68	55	3	6	35	1.43
63805986--63806044	26	2.3	26	82	11	68	54	3	6	35	1.44
63810082--63810116	9	3.7	9	88	11	52	77	0	2	20	0.90
63815899--63816025	17	6.7	17	68	21	65	37	1	0	60	1.06
63815910--63816043	40	3.3	40	89	3	216	35	1	0	63	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63815928--63816034	11	10.4	11	72	20	88	37	1	0	60	1.07
63815978--63816049	29	2.4	31	88	11	114	40	1	0	58	1.07
63816018--63816056	20	2.0	20	89	0	60	38	0	0	61	0.96
63816017--63816074	22	2.8	21	80	17	59	41	0	3	55	1.17
63817443--63817471	4	7.2	4	100	0	58	75	0	0	24	0.80
63829062--63829102	21	2.0	21	90	0	64	29	21	29	19	1.98
63832164--63832274	4	26.2	4	73	13	80	23	4	28	43	1.73
63836816--63836906	33	2.7	34	81	6	96	35	15	23	26	1.94
63836846--63836924	33	2.4	32	79	6	86	34	15	22	27	1.94
63836848--63837046	107	1.9	107	85	4	276	33	17	23	26	1.96
63839800--63839837	18	2.1	18	85	9	51	26	0	10	63	1.27
63840005--63840044	20	2.1	18	86	9	53	60	12	5	22	1.52
63840005--63840045	19	2.1	20	86	4	57	60	12	4	21	1.50
63841362--63841416	24	2.2	25	81	12	60	50	10	7	30	1.64
63841964--63842014	18	2.7	18	84	6	57	41	17	17	23	1.90
63842203--63842229	13	2.1	13	100	0	54	44	33	14	7	1.73
63842324--63842348	7	3.6	7	100	0	50	16	16	16	52	1.76
63842518--63842627	37	3.0	37	86	2	159	34	3	13	48	1.60
63842636--63842719	9	9.4	9	85	2	98	30	8	25	35	1.85
63842627--63842719	27	3.5	27	91	1	125	32	8	23	35	1.85
63847652--63847730	33	2.3	35	80	10	92	44	6	8	40	1.61
63847652--63847730	34	2.3	34	80	10	90	44	6	8	40	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63852503--63852549	18	2.6	18	82	0	67	25	34	23	17	1.96
63861519--63861557	18	2.2	18	90	0	60	46	0	0	53	1.00
63864910--63865536	241	2.6	238	84	4	816	37	18	15	28	1.91
63873873--63873902	12	2.5	12	94	0	51	33	26	10	30	1.89
63879594--63879618	12	2.1	12	100	0	50	52	0	8	40	1.31
63880843--63880878	4	9.0	4	100	0	72	25	0	25	50	1.50
63887328--63887387	30	2.1	30	87	9	90	15	6	10	68	1.38
63890670--63890754	26	3.2	26	69	18	84	31	11	3	52	1.54
63890643--63890754	54	2.1	54	100	0	224	31	14	5	49	1.66
63891985--63892052	16	4.2	16	92	0	118	27	0	36	35	1.58
63892280--63892420	17	8.6	17	65	21	61	52	0	1	45	1.14
63892318--63892366	24	2.1	22	85	14	64	55	0	2	42	1.11
63892337--63892392	15	4.0	15	73	17	57	55	0	0	44	0.99
63892347--63892409	26	2.5	25	82	10	83	58	1	0	39	1.07
63895137--63895169	17	1.9	17	88	11	50	72	0	0	27	0.85
63895980--63896046	34	1.9	35	84	3	91	35	2	8	52	1.48
63902415--63902450	18	2.0	18	100	0	72	44	5	16	33	1.71
63912594--63912750	78	2.0	78	86	0	215	31	24	17	26	1.97
63912894--63912961	34	2.0	34	100	0	136	29	17	23	29	1.97
63912905--63912977	34	2.1	34	85	5	94	30	17	21	30	1.97
63914523--63914717	93	2.1	92	88	4	286	44	4	4	47	1.41
63914750--63914783	17	2.0	17	94	0	59	44	5	0	50	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63914750--63914788	17	2.4	16	87	8	53	43	5	0	51	1.24
63914754--63914793	17	2.3	18	83	12	57	47	5	0	47	1.24
63914873--63915007	15	8.9	15	66	24	61	43	2	3	50	1.32
63914749--63914965	120	1.8	119	89	6	341	40	3	5	50	1.45
63914975--63915016	15	2.7	16	82	14	52	45	0	2	52	1.13
63914967--63915263	154	1.9	156	95	2	535	47	5	2	44	1.40
63915116--63915150	18	2.0	17	88	5	52	45	0	0	54	0.99
63915383--63915421	16	2.4	16	86	0	51	28	33	2	35	1.71
63915396--63915452	16	3.6	16	95	0	87	33	36	0	29	1.58
63916042--63916284	42	5.8	42	75	7	208	30	20	23	24	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221