genome.fa.s26.2.7.7.80.10.50.1000.69.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Length:  64892201

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   

This is table  69  of  221  ( 26413 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20075708--20075746	16	2.4	16	95	0	69	33	5	10	51	1.58
20076052--20076180	51	2.5	52	86	3	181	27	14	29	28	1.95
20082962--20083120	43	3.7	42	79	7	151	29	27	18	25	1.98
20086588--20086647	29	2.1	29	100	0	120	45	3	28	23	1.69
20100074--20100297	104	2.2	104	93	1	378	31	31	19	17	1.95
20100626--20100689	30	2.2	29	81	10	76	29	28	6	35	1.82
20100633--20100689	30	1.9	30	85	3	80	29	24	7	38	1.82
20101511--20101540	12	2.5	12	94	0	51	6	30	40	23	1.80
20102673--20102742	25	2.8	25	84	4	97	32	22	20	24	1.97
20105544--20105817	137	2.0	137	97	0	512	39	16	17	25	1.91
20108272--20108350	34	2.3	34	82	2	95	21	20	25	32	1.97
20109530--20109639	38	2.9	38	81	8	125	34	30	15	20	1.93
20114825--20114925	40	2.5	41	88	4	143	27	19	25	26	1.99
20122407--20122508	41	2.5	41	88	3	143	28	19	25	26	1.99
20124293--20124373	39	2.1	39	95	0	144	32	24	7	35	1.83
20125433--20125457	7	3.6	7	100	0	50	12	16	0	72	1.13
20128302--20128377	31	2.5	31	80	0	89	18	36	23	21	1.95
20131807--20132068	40	6.6	39	85	6	273	25	27	20	26	1.99
20133737--20133802	26	2.5	26	77	2	69	33	15	18	33	1.92
20143951--20143987	19	1.9	19	100	0	74	45	0	27	27	1.54
20146613--20146735	25	5.0	25	75	8	117	30	20	27	21	1.98
20146670--20146726	24	2.3	24	80	17	64	36	19	24	19	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20149237--20149292	26	2.2	26	84	12	71	44	14	5	35	1.68
20151584--20151631	13	3.5	13	81	13	53	37	6	6	50	1.53
20162886--20162971	27	3.2	27	69	18	70	44	8	23	24	1.80
20164675--20164824	42	3.6	42	86	3	212	43	16	23	16	1.87
20164655--20164732	21	3.7	21	73	0	57	42	20	23	14	1.88
20173135--20173175	5	8.2	5	100	0	82	41	0	0	58	0.98
20173206--20173257	25	2.0	26	85	3	70	73	3	21	1	1.10
20173197--20173257	16	3.8	16	78	18	56	73	3	21	1	1.06
20173197--20173258	15	3.9	14	77	22	61	72	3	22	1	1.08
20178085--20178174	38	2.4	38	98	0	171	18	14	35	31	1.91
20180065--20180218	5	30.8	5	92	3	249	40	0	0	58	1.03
20180243--20180311	4	17.0	4	72	24	56	73	1	21	2	1.04
20180245--20180311	10	6.6	10	83	11	57	73	1	22	2	1.06
20180242--20180322	19	4.0	20	78	18	87	71	1	24	2	1.05
20180224--20180310	33	2.7	33	79	12	99	75	1	17	5	1.05
20180241--20180311	29	2.5	28	82	6	90	74	1	21	2	1.02
20180243--20180322	13	6.3	13	73	22	55	71	1	25	2	1.06
20181003--20181065	21	3.2	20	73	18	53	33	0	15	50	1.45
20181150--20181284	41	3.4	41	76	9	145	25	17	25	31	1.97
20181150--20181289	40	3.5	40	74	6	133	27	17	24	30	1.97
20182007--20182036	13	2.3	13	100	0	60	40	43	0	16	1.48
20182177--20182253	9	8.4	9	78	8	66	24	9	23	42	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20184655--20184868	104	2.0	104	99	0	419	36	14	11	38	1.81
20191045--20191159	40	2.9	39	84	5	124	33	6	0	59	1.30
20191959--20192004	23	2.0	23	83	8	58	52	2	4	41	1.33
20192711--20192853	72	2.0	72	91	2	234	34	17	18	28	1.94
20193244--20193272	10	2.9	10	100	0	58	31	6	10	51	1.62
20193625--20193674	23	2.2	22	82	3	55	68	8	2	22	1.26
20195745--20196397	50	13.0	50	75	3	560	28	19	20	32	1.97
20195762--20196397	100	6.3	100	85	4	789	27	19	20	32	1.97
20197789--20197843	6	9.8	6	76	20	57	0	18	0	81	0.68
20197789--20197843	15	3.7	15	83	11	78	0	18	0	81	0.68
20197789--20197843	24	2.5	21	78	18	67	0	18	0	81	0.68
20197797--20197843	24	2.0	24	91	0	76	0	19	0	80	0.70
20201350--20201385	17	2.1	17	94	0	63	47	0	33	19	1.50
20202943--20202967	13	1.9	13	100	0	50	28	16	16	40	1.89
20208420--20208447	4	7.0	4	100	0	56	75	0	0	25	0.81
20210286--20210330	22	2.0	22	86	8	63	60	6	2	31	1.35
20210776--20210830	28	1.9	30	82	14	71	54	3	5	36	1.41
20213695--20213730	18	1.9	19	88	5	56	50	8	8	33	1.63
20219183--20219225	21	2.0	21	82	8	52	44	11	0	44	1.40
20223173--20223215	16	2.7	16	92	0	68	51	2	23	23	1.60
20223168--20223223	16	3.5	16	87	0	67	44	5	25	25	1.75
20226608--20226810	30	6.8	30	75	6	126	25	22	12	39	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20226607--20226810	60	3.4	59	75	8	205	25	23	12	39	1.89
20226607--20226914	120	2.6	119	84	3	370	22	24	13	39	1.90
20226786--20226856	29	2.4	30	85	2	90	14	30	9	45	1.77
20226847--20226914	30	2.3	30	85	7	86	22	23	16	38	1.93
20234444--20234571	59	2.2	60	85	7	172	24	26	13	35	1.92
20234504--20234662	29	5.4	29	75	3	95	24	23	12	39	1.89
20234592--20234662	30	2.4	29	83	2	79	28	21	11	39	1.87
20236276--20236315	13	3.1	13	92	0	71	20	7	30	42	1.79
20238607--20238766	80	2.0	80	95	0	284	57	7	13	21	1.60
20239080--20239124	21	2.1	21	88	8	65	73	8	2	15	1.18
20239085--20239145	24	2.6	22	78	19	61	70	6	1	21	1.19
20239362--20239411	25	2.0	25	100	0	100	40	16	12	32	1.84
20240789--20240904	41	2.8	41	75	9	108	32	23	17	26	1.96
20241189--20241380	44	4.4	44	80	3	120	28	21	19	30	1.98
20241441--20241650	44	4.6	45	72	14	137	28	23	14	33	1.94
20252759--20252787	14	2.1	14	100	0	58	31	0	6	62	1.22
20255828--20256102	72	3.8	71	81	5	336	54	14	5	25	1.62
20258540--20258576	13	2.7	14	80	20	51	64	8	5	21	1.40
20259268--20259325	29	2.0	29	100	0	116	27	27	24	20	1.99
20268030--20268066	16	2.1	19	85	14	53	10	13	2	72	1.21
20272185--20272245	9	6.6	9	77	7	50	34	3	3	59	1.30
20272186--20272223	18	2.1	18	90	0	58	42	2	0	55	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20277009--20277077	30	2.3	30	89	2	102	31	26	2	39	1.71
20278659--20278707	20	2.5	20	80	3	64	55	0	2	42	1.11
20278821--20278867	23	2.1	23	84	4	60	57	12	4	25	1.54
20279446--20279482	17	2.1	18	85	14	51	54	18	2	24	1.57
20303125--20303185	30	2.0	30	93	0	104	29	13	21	36	1.91
20303649--20304039	88	4.5	87	78	7	323	34	12	11	41	1.79
20303920--20304135	84	2.7	78	83	5	236	32	8	10	48	1.69
20308944--20309229	46	6.3	46	94	1	461	33	15	22	29	1.94
20311408--20311479	3	24.3	3	74	13	60	65	5	2	26	1.28
20311407--20311498	15	6.2	15	72	12	50	67	5	2	25	1.23
20318246--20318283	14	2.8	14	84	4	51	26	18	5	50	1.68
20329492--20329548	24	2.4	24	90	0	87	38	5	8	47	1.57
20335399--20335827	47	9.1	47	94	1	696	31	8	30	28	1.88
20335946--20336024	37	2.1	37	88	4	115	25	18	30	25	1.98
20337891--20337993	43	2.4	43	100	0	206	22	15	35	26	1.94
20337975--20338048	29	2.6	29	89	4	105	25	16	32	25	1.96
20338446--20338602	40	3.9	40	90	0	233	26	22	26	24	2.00
20338367--20338596	80	2.9	80	81	5	225	26	23	26	23	2.00
20338367--20338597	120	1.9	120	82	5	288	26	23	25	24	2.00
20342284--20342759	47	10.1	47	94	0	772	32	9	29	29	1.89
20342878--20342956	37	2.1	37	88	4	115	25	18	30	25	1.98
20351185--20351245	16	3.8	16	79	12	63	9	0	18	72	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20353847--20353885	20	2.0	20	90	5	62	48	10	12	28	1.74
20359724--20359868	69	2.1	68	97	2	272	33	22	15	29	1.94
20368415--20368440	12	2.2	12	100	0	52	7	15	30	46	1.74
20368509--20368681	74	2.4	72	86	1	238	26	21	26	25	2.00
20368580--20368999	227	1.8	228	83	4	562	27	20	24	28	1.99
20368580--20368999	114	3.7	114	85	3	531	27	20	24	28	1.99
20369586--20369625	21	2.0	21	85	5	55	20	0	42	37	1.52
20369586--20369647	21	3.0	20	73	13	54	24	1	40	33	1.65
20369627--20369677	22	2.3	22	83	6	68	29	0	39	31	1.57
20369610--20369674	29	2.2	29	78	5	69	26	1	40	32	1.65

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221