genome.fa.s26.2.7.7.80.10.50.1000.104.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Length:  64892201

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   

This is table  104  of  221  ( 26413 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31998558--31998668	11	10.6	11	72	20	78	59	0	3	36	1.15
31998533--31998680	41	3.7	40	90	4	226	62	0	2	34	1.15
32000967--32001005	15	2.6	14	84	15	51	84	7	7	0	0.77
32003122--32003166	22	2.0	22	83	8	56	64	8	11	15	1.49
32008464--32008525	19	3.3	19	68	20	58	30	6	19	43	1.76
32008464--32008539	37	2.1	37	97	0	143	34	7	18	39	1.80
32018886--32018929	16	2.7	16	85	3	61	36	0	2	61	1.09
32019057--32019100	16	2.7	16	82	3	52	38	0	2	59	1.10
32018860--32019210	170	2.1	171	93	1	598	42	4	8	44	1.55
32023307--32023408	28	3.6	28	91	0	159	32	13	24	29	1.94
32023307--32023429	28	4.4	28	86	6	98	32	13	24	30	1.93
32023306--32023429	56	2.2	55	84	4	158	33	12	24	29	1.93
32024158--32024843	93	7.4	93	93	1	1117	27	15	17	39	1.89
32029046--32029790	40	18.6	40	95	0	1276	28	18	27	24	1.98
32037055--32037993	40	23.6	40	93	1	1568	28	18	27	24	1.98
32048634--32048759	28	4.5	28	85	2	164	31	12	25	30	1.93
32049483--32050146	93	7.2	93	94	0	1098	28	14	17	39	1.89
32049451--32050146	23	30.0	23	75	12	539	28	14	17	39	1.89
32052277--32052367	26	3.5	26	79	5	94	24	18	28	28	1.98
32059273--32059314	18	2.3	18	91	0	66	30	33	11	23	1.91
32060602--32060632	10	2.9	11	90	9	55	74	6	0	19	1.03
32062753--32062791	12	3.4	11	86	10	51	74	0	23	2	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32062766--32062848	33	2.5	34	81	14	86	63	4	25	6	1.37
32065776--32065827	18	2.9	17	83	10	77	28	30	13	26	1.94
32067989--32068114	26	4.8	26	80	3	137	23	19	25	32	1.97
32072454--32072488	18	2.1	18	89	10	56	34	17	25	22	1.96
32089923--32089964	20	2.1	20	86	8	59	54	0	0	45	0.99
32089985--32090047	22	2.9	22	78	4	65	49	0	4	46	1.23
32090029--32090062	17	2.0	17	88	0	50	52	0	0	47	1.00
32108009--32108398	40	9.8	40	94	0	645	27	20	27	24	1.99
32116273--32116742	40	11.8	40	94	0	778	27	20	27	24	1.99
32126450--32126515	22	3.3	21	67	32	63	30	4	19	45	1.70
32126367--32126517	77	1.9	78	90	4	243	31	4	18	45	1.70
32126367--32126543	39	4.6	39	85	3	223	33	5	18	43	1.72
32126374--32126543	77	2.2	78	86	3	227	33	5	17	43	1.72
32132623--32132653	16	1.9	16	100	0	62	51	0	3	45	1.17
32132620--32132677	22	2.7	22	80	15	68	51	0	1	46	1.11
32132757--32132813	15	3.5	15	71	17	51	49	1	1	47	1.22
32133570--32133622	22	2.4	22	81	12	63	47	9	1	41	1.47
32133579--32133620	23	1.9	21	90	9	66	52	4	2	40	1.35
32133604--32133647	22	2.0	22	82	8	54	47	2	0	50	1.13
32136834--32137106	130	2.1	131	92	1	449	26	23	19	31	1.98
32137067--32137458	44	8.9	44	93	0	649	28	26	16	28	1.97
32137549--32137632	44	1.9	44	90	0	132	28	22	17	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32144771--32144836	23	2.9	23	97	0	123	36	4	27	31	1.77
32145890--32145954	29	2.2	31	86	10	91	32	9	23	35	1.86
32152936--32153015	42	1.9	42	97	0	151	31	20	8	40	1.83
32156486--32156534	26	2.0	24	84	8	62	61	4	0	34	1.15
32162785--32162836	24	2.2	24	89	0	77	50	7	3	38	1.50
32165727--32165778	24	2.2	24	89	0	77	53	7	3	34	1.48
32187833--32187985	37	4.2	37	77	9	143	35	15	16	32	1.91
32188644--32189298	327	2.0	327	97	0	1247	26	23	27	21	1.99
32193520--32193714	50	3.9	50	81	2	212	29	20	28	22	1.98
32193466--32193714	100	2.4	103	79	6	274	29	18	27	24	1.98
32196928--32196986	29	2.0	30	83	3	75	47	16	6	28	1.72
32199922--32200784	430	2.0	430	99	0	1699	28	20	13	37	1.91
32210306--32210349	22	2.0	22	86	8	63	11	2	11	75	1.15
32210992--32211270	133	2.1	134	92	3	465	38	10	12	37	1.79
32215024--32215196	70	2.5	70	81	9	201	23	16	23	36	1.94
32214965--32215420	140	3.3	138	78	4	457	26	17	21	34	1.96
32215077--32215445	70	5.3	69	74	10	221	27	18	21	33	1.96
32222077--32222107	15	2.0	16	93	6	55	38	0	0	61	0.96
32223915--32223962	23	2.1	23	100	0	96	41	16	8	33	1.78
32225012--32225054	20	2.1	21	86	4	61	37	2	2	58	1.24
32225255--32225297	19	2.2	20	88	8	63	58	9	0	32	1.30
32227953--32227988	18	1.9	19	88	5	56	55	8	0	36	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32228589--32228646	29	2.0	29	89	0	89	53	6	5	34	1.50
32235216--32235278	24	2.9	22	81	11	69	63	1	0	34	1.04
32236988--32237027	20	2.0	21	85	9	57	50	0	27	22	1.50
32239543--32239597	14	4.0	14	79	13	60	67	0	30	1	1.01
32239766--32239884	60	2.0	60	89	0	184	35	0	12	51	1.46
32240780--32240814	18	2.0	18	94	5	63	40	0	0	60	0.97
32242234--32242277	20	2.2	20	83	4	52	79	4	2	13	0.98
32244402--32244591	98	1.9	98	94	0	335	24	23	18	34	1.96
32245411--32245440	6	5.0	6	100	0	60	33	33	33	0	1.58
32245581--32245691	33	3.4	33	83	0	141	16	39	10	33	1.83
32250245--32250368	31	3.9	31	73	22	96	36	4	0	58	1.22
32250347--32250393	23	2.0	24	87	4	69	38	0	2	59	1.09
32250360--32250405	23	2.0	24	82	4	58	36	0	4	58	1.18
32252999--32253147	71	2.1	71	86	2	201	33	26	14	25	1.94
32256403--32256501	43	2.3	43	85	3	128	24	29	17	29	1.97
32256669--32256704	16	2.2	16	95	0	63	33	19	0	47	1.50
32259121--32259166	20	2.3	20	84	0	65	32	2	28	36	1.69
32261283--32261373	43	2.1	43	83	4	112	27	29	18	24	1.98
32269767--32269885	9	13.4	9	72	11	86	32	0	18	48	1.48
32269776--32269863	27	3.3	27	76	6	97	32	0	18	48	1.48
32269766--32269885	54	2.3	52	92	2	195	33	0	18	48	1.48
32269820--32269931	43	2.6	42	77	14	106	30	2	14	52	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32269905--32269971	35	1.9	35	93	0	116	34	5	11	47	1.65
32271498--32271524	2	13.5	2	100	0	54	51	0	0	48	1.00
32271648--32271700	24	2.2	24	96	0	97	49	3	3	43	1.38
32272220--32272260	17	2.4	17	87	0	55	43	14	29	12	1.82
32272229--32272266	17	2.2	17	100	0	76	42	13	34	10	1.78
32273506--32273565	24	2.6	23	84	10	77	43	1	35	20	1.62
32273528--32273581	23	2.3	24	84	12	69	42	1	35	20	1.63
32273669--32274318	116	5.7	116	82	6	713	34	22	16	27	1.95
32273669--32274308	233	2.8	229	83	6	775	34	22	16	27	1.95
32274822--32274883	7	8.6	7	80	7	70	20	0	29	50	1.49
32274821--32274882	15	4.2	15	81	4	81	19	0	29	51	1.47
32274822--32274882	22	2.8	22	84	0	86	19	0	29	50	1.48
32275700--32275735	19	1.9	18	88	5	54	41	0	19	38	1.52
32275782--32275895	48	2.4	47	84	7	149	26	14	21	37	1.92
32280624--32280657	14	2.4	14	90	5	50	14	50	0	35	1.44
32284765--32285072	155	2.0	155	96	0	571	37	22	17	22	1.94
32286641--32286701	27	2.3	27	82	5	79	31	13	27	27	1.94
32294215--32294300	27	3.1	27	86	5	111	45	18	15	20	1.85
32294231--32294311	27	2.9	28	87	5	94	45	19	17	17	1.85
32294501--32294563	22	2.9	22	75	0	63	11	17	20	50	1.76
32298980--32299065	45	1.9	45	90	0	136	19	22	17	40	1.91
32300566--32300785	34	6.4	34	72	5	174	25	25	26	22	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32301150--32301250	49	2.1	49	98	0	193	45	9	4	39	1.59
32303858--32303906	25	2.0	25	100	0	98	32	8	20	38	1.82
32304311--32304408	25	4.0	24	80	9	81	25	23	22	28	1.99
32304327--32304408	25	3.3	25	84	0	110	25	23	23	28	2.00
32306499--32306524	13	2.0	13	100	0	52	38	15	23	23	1.92
32313285--32313448	25	6.7	25	72	10	106	32	19	26	21	1.97
32313488--32313547	24	2.4	25	80	2	68	33	21	25	20	1.97
32315163--32315280	25	4.7	26	80	12	131	23	22	26	27	1.99
32315173--32315280	50	2.2	50	88	6	166	24	23	25	26	2.00
32318713--32318753	19	2.2	19	100	0	82	36	14	0	48	1.44

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221