genome.fa.s26.2.7.7.80.10.50.1000.183.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Length:  64892201

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   

This is table  183  of  221  ( 26413 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54407922--54407997	20	3.8	20	73	16	86	48	10	9	31	1.69
54407914--54408006	39	2.4	39	91	5	145	47	10	10	31	1.73
54408480--54408575	7	13.1	7	77	10	79	1	19	2	77	0.94
54408510--54408553	16	2.6	17	89	7	72	2	13	4	79	0.98
54408480--54408575	21	4.4	21	74	18	88	1	19	2	77	0.94
54408850--54408897	18	2.7	18	83	0	69	8	27	45	18	1.78
54408935--54408969	6	5.8	6	90	10	54	0	17	0	82	0.66
54408936--54408968	17	1.9	17	93	0	57	0	18	0	81	0.68
54408936--54408978	12	3.5	12	84	15	52	0	20	0	79	0.74
54408935--54408978	13	3.5	13	84	12	56	0	20	0	79	0.73
54408945--54409007	3	22.0	3	80	6	69	0	30	0	69	0.88
54409086--54409142	20	3.1	19	76	16	57	1	38	0	59	1.08
54409363--54409458	30	3.2	29	89	4	131	37	6	19	36	1.77
54412308--54412476	90	1.8	93	87	7	256	35	20	9	34	1.85
54412305--54412498	90	2.1	92	84	8	252	35	20	8	36	1.82
54412533--54412566	10	3.3	10	87	4	50	76	0	0	23	0.79
54412573--54412629	26	2.1	27	83	3	71	56	1	0	42	1.10
54412633--54412682	19	2.6	19	74	0	64	58	0	6	36	1.23
54412667--54412715	22	2.2	22	78	7	55	63	6	4	26	1.36
54412961--54413015	9	6.1	9	80	16	53	27	1	3	67	1.17
54412962--54413077	10	12.2	10	72	14	77	26	3	2	67	1.20
54412962--54413077	19	6.1	19	74	10	94	26	3	2	67	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54413019--54413070	18	2.7	20	76	14	63	21	5	1	71	1.17
54412915--54413077	28	5.7	27	70	13	94	28	4	2	64	1.27
54413113--54413142	9	3.2	9	95	4	51	20	3	0	76	0.92
54424326--54424373	25	1.9	25	87	8	71	35	14	22	27	1.93
54424326--54424379	25	2.2	25	83	6	65	37	14	24	24	1.93
54430177--54430250	36	2.1	36	100	0	148	20	20	16	43	1.88
54433696--54433742	9	5.3	9	85	9	62	51	6	0	42	1.27
54434368--54434406	21	1.9	20	84	5	51	35	0	20	43	1.52
54436079--54436123	24	1.9	24	82	13	58	60	0	2	37	1.09
54437492--54437560	21	3.0	23	69	12	70	24	13	36	26	1.92
54442527--54442588	26	2.3	27	75	2	72	22	12	8	56	1.62
54445407--54445463	27	2.1	27	86	0	78	54	0	8	36	1.32
54445587--54445617	3	10.3	3	92	0	53	64	3	0	32	1.09
54445930--54445984	22	2.6	21	78	13	51	38	14	9	38	1.78
54450534--54450567	2	17.0	2	87	0	50	50	2	2	44	1.32
54456327--54456351	13	1.9	13	100	0	50	52	24	0	24	1.48
54457343--54457382	9	4.2	9	81	12	53	40	25	0	35	1.56
54458977--54459035	29	2.0	29	96	0	109	27	18	10	44	1.82
54460231--54460269	10	3.9	10	83	12	53	58	7	0	33	1.26
54460227--54460269	20	2.2	20	91	0	68	60	6	0	32	1.23
54463071--54463124	16	3.4	16	86	0	81	38	3	31	25	1.74
54463106--54463198	44	2.1	44	84	9	118	33	4	26	35	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54469941--54469972	15	2.0	17	88	11	50	31	15	12	40	1.85
54470747--54470802	27	2.1	27	82	0	67	26	32	32	8	1.87
54471113--54471336	79	2.9	77	76	12	219	34	4	10	49	1.59
54473521--54473556	17	2.1	17	89	0	54	13	11	11	63	1.51
54473535--54474043	156	3.4	148	86	8	692	29	9	7	54	1.59
54473535--54474090	151	3.7	147	77	12	510	28	9	7	55	1.58
54474195--54474303	30	3.4	30	76	20	112	61	7	6	24	1.46
54474191--54474273	38	2.2	38	93	0	139	62	6	6	25	1.41
54474243--54474293	16	3.3	16	71	20	54	54	11	7	25	1.63
54474190--54474345	68	2.3	66	77	14	151	60	5	7	26	1.45
54474534--54474641	3	36.7	3	73	10	80	0	38	1	59	1.08
54474599--54474661	11	5.8	11	83	12	78	0	34	0	65	0.93
54476064--54476098	18	2.0	17	94	5	61	42	0	0	57	0.99
54484846--54485179	172	1.9	172	92	0	560	52	11	16	19	1.74
54488735--54488785	22	2.3	22	100	0	102	27	33	0	39	1.57
54488752--54488869	51	2.3	51	92	1	193	29	29	0	40	1.57
54488873--54488920	10	4.6	10	76	7	51	41	0	0	58	0.98
54488873--54488920	21	2.3	21	81	0	60	41	0	0	58	0.98
54488871--54488933	31	2.1	29	88	5	90	34	0	0	65	0.93
54488884--54488926	21	2.1	21	95	4	79	32	0	0	67	0.91
54490074--54490404	122	2.7	124	91	0	522	32	20	15	32	1.93
54497020--54497070	23	2.1	25	82	13	63	70	3	11	13	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54506953--54507009	11	5.3	11	79	12	64	71	3	1	22	1.10
54518087--54518241	78	2.0	77	87	1	220	36	16	20	27	1.93
54531162--54531193	10	3.2	10	95	0	55	46	28	6	18	1.73
54532043--54532177	41	3.3	41	84	2	173	38	25	18	17	1.92
54536568--54536593	8	3.2	8	100	0	52	76	0	0	23	0.78
54542083--54542151	30	2.5	27	79	13	79	47	20	0	31	1.50
54542820--54542892	31	2.4	31	81	9	87	5	19	2	72	1.16
54542819--54542887	25	2.7	24	82	15	68	5	20	1	72	1.13
54542891--54542976	15	5.8	15	69	17	63	47	3	1	47	1.26
54542906--54543004	43	2.3	42	77	10	101	46	4	1	48	1.27
54545124--54545191	23	3.0	23	82	4	84	19	20	20	39	1.92
54545639--54545757	61	1.9	62	94	1	213	35	7	18	38	1.79
54546927--54546993	26	2.5	28	87	4	93	35	0	1	62	1.04
54555629--54555734	41	2.6	38	77	20	108	25	0	6	66	1.21
54555957--54556296	141	2.4	141	85	6	433	53	7	10	27	1.63
54557840--54557958	29	4.1	29	71	18	77	38	11	2	47	1.54
54566370--54566430	18	3.3	17	77	9	50	42	6	0	50	1.28
54570397--54570575	89	2.0	89	100	0	358	48	20	8	22	1.77
54581266--54581382	26	4.5	26	90	1	173	1	32	18	47	1.59
54584171--54584343	72	2.4	73	86	7	257	26	6	12	55	1.60
54585742--54585767	12	2.2	12	100	0	52	34	0	34	30	1.58
54586387--54586421	13	2.7	13	81	0	52	37	25	8	28	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54589325--54589349	13	1.9	13	100	0	50	56	0	0	44	0.99
54590450--54591187	154	4.9	151	77	10	733	31	8	5	53	1.56
54590466--54591187	295	2.4	298	82	7	863	31	8	5	53	1.55
54591182--54592110	150	6.3	138	73	16	563	53	7	9	30	1.60
54591279--54592110	150	5.5	149	84	6	1072	53	6	9	30	1.59
54591279--54592110	301	2.8	299	87	4	1181	53	6	9	30	1.59
54591185--54592121	451	2.1	437	88	6	1386	53	7	9	30	1.60
54592387--54592420	18	1.9	18	88	5	52	29	0	5	64	1.17
54592875--54592908	18	2.0	18	88	11	54	41	0	0	58	0.98
54593411--54593517	18	6.0	19	72	17	77	61	1	1	34	1.17
54593410--54593499	35	2.6	35	73	3	92	61	2	1	35	1.16
54593449--54593545	9	10.8	9	74	10	74	62	0	2	35	1.07
54593460--54593553	28	3.4	28	78	12	88	63	0	2	34	1.06
54593664--54593714	20	2.6	19	69	6	57	35	3	0	60	1.15
54594520--54594563	19	2.2	21	88	11	67	45	0	6	47	1.29
54600146--54600203	28	2.1	27	87	3	80	27	5	3	63	1.31
54603495--54603534	12	3.2	12	89	3	53	32	5	2	60	1.32
54603701--54603771	36	2.0	36	83	5	90	33	11	2	52	1.52
54604416--54604725	109	2.8	109	90	2	478	30	16	19	33	1.94
54606963--54607025	3	21.0	3	100	0	126	66	0	0	33	0.92
54612925--54612959	18	1.9	18	88	0	52	0	25	34	40	1.56
54613194--54613228	6	5.8	6	86	0	52	0	11	31	57	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54613126--54613252	51	2.3	54	75	18	129	15	11	31	40	1.84
54614769--54614793	13	1.9	13	100	0	50	56	0	0	44	0.99
54631179--54631220	20	2.0	21	86	13	61	14	0	11	73	1.09
54633458--54633583	55	2.3	55	82	10	150	26	18	4	50	1.67
54635046--54635086	7	5.4	7	86	11	55	80	0	2	17	0.82
54635189--54635220	11	2.8	12	90	9	50	0	53	0	46	1.00
54635686--54635739	9	5.8	9	82	2	63	33	3	9	53	1.50
54635713--54635758	23	2.0	23	83	8	58	30	2	10	56	1.46
54636049--54636198	24	6.5	24	68	18	88	35	4	0	59	1.23
54637773--54637823	3	17.3	3	75	4	50	33	1	3	60	1.26

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221