genome.fa.s26.2.7.7.80.10.50.1000.39.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Length:  64892201

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   

This is table  39  of  221  ( 26413 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10763574--10763910	185	1.9	176	87	6	487	33	2	15	48	1.60
10763895--10764037	9	16.2	9	65	20	52	32	1	18	47	1.57
10763891--10764036	25	5.9	25	71	19	92	32	1	18	47	1.57
10763951--10764033	37	2.3	36	81	10	98	31	1	18	49	1.55
10763998--10764070	33	2.4	30	86	9	94	32	0	15	52	1.43
10764018--10764098	42	1.9	42	92	0	135	35	1	13	49	1.50
10765561--10765807	84	2.9	84	92	0	404	32	21	17	27	1.96
10766268--10766526	88	2.9	88	86	5	362	44	25	1	28	1.63
10766511--10766550	14	2.9	14	80	0	53	30	47	0	22	1.52
10766511--10766550	21	1.9	21	89	0	62	30	47	0	22	1.52
10766644--10766669	12	2.2	12	100	0	52	30	50	0	19	1.48
10766710--10766743	15	2.3	15	95	5	61	35	35	0	29	1.58
10767307--10767675	114	3.2	114	88	0	515	27	26	20	25	1.99
10767579--10767747	73	2.3	72	84	3	221	26	21	20	31	1.98
10767465--10767861	187	2.1	187	86	2	539	25	24	22	27	2.00
10767649--10767861	115	1.9	114	83	5	279	25	24	23	26	2.00
10779131--10779187	29	1.9	30	82	3	71	40	14	12	33	1.83
10779265--10779302	17	2.2	17	90	0	58	42	0	18	39	1.50
10779940--10779968	3	9.7	3	100	0	58	68	0	0	31	0.89
10781866--10781922	18	2.9	20	76	12	64	57	0	3	38	1.16
10781855--10781926	9	7.6	9	73	16	56	61	1	2	34	1.19
10784933--10784994	33	1.9	32	87	9	90	40	3	1	54	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10785397--10785437	17	2.4	18	80	19	52	56	0	4	39	1.21
10785441--10785477	18	2.1	18	89	0	56	70	2	0	27	1.01
10803035--10803101	33	2.0	33	100	0	134	26	5	20	46	1.74
10803129--10803153	12	2.1	12	100	0	50	24	28	8	40	1.83
10805821--10805998	27	6.6	27	85	3	214	26	14	28	30	1.95
10805822--10805977	82	1.9	81	89	3	242	26	14	28	30	1.95
10805818--10805998	82	2.2	81	84	2	238	27	14	27	30	1.95
10807538--10807673	29	4.6	29	81	3	146	34	27	12	25	1.92
10807538--10807676	60	2.4	59	87	2	190	35	27	12	24	1.91
10817992--10818061	33	2.1	33	94	0	122	42	21	4	31	1.72
10818310--10818599	41	7.1	41	83	1	314	36	16	25	21	1.93
10818304--10818612	123	2.5	123	81	6	353	36	15	25	22	1.93
10819351--10819398	24	2.0	24	100	0	96	41	12	12	33	1.80
10829358--10829395	17	2.4	16	83	12	51	42	2	5	50	1.39
10833068--10833125	20	2.8	21	84	10	66	55	3	1	39	1.27
10833107--10833144	11	3.4	11	96	3	67	57	0	2	39	1.12
10833128--10833161	17	2.0	17	88	0	50	64	0	0	35	0.94
10833093--10833155	20	3.0	20	73	8	63	60	0	1	38	1.07
10833119--10833181	29	2.2	29	91	0	99	63	0	1	34	1.04
10833093--10833211	42	3.0	41	77	18	126	59	0	1	38	1.07
10833130--10833202	29	2.6	27	85	10	85	63	0	1	35	1.04
10833099--10833234	39	3.5	39	81	12	122	61	0	1	37	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10836037--10836121	27	3.1	27	79	0	80	34	20	20	25	1.96
10836181--10836238	24	2.4	24	85	5	73	18	3	27	50	1.63
10836302--10836371	26	2.7	26	80	8	63	15	20	27	37	1.93
10836327--10836383	26	2.2	26	93	0	96	15	21	26	36	1.93
10836337--10836392	26	2.2	26	90	0	85	14	19	30	35	1.91
10836386--10836573	32	5.8	33	85	3	242	22	19	19	39	1.93
10836388--10836573	65	2.9	65	85	1	250	22	19	18	39	1.93
10836380--10836573	97	2.0	96	86	3	273	22	19	18	39	1.92
10846630--10846921	50	5.7	50	81	3	291	27	20	27	23	1.99
10850682--10850735	23	2.3	24	75	9	58	75	3	7	12	1.14
10864095--10864176	28	3.0	28	89	5	123	17	21	26	34	1.95
10870232--10870269	18	2.1	18	90	0	58	44	21	2	31	1.66
10870713--10870764	18	2.9	18	74	5	52	67	3	3	25	1.25
10875972--10876111	61	2.3	61	90	2	210	33	12	25	28	1.93
10877866--10877935	7	10.0	7	87	0	86	37	0	32	30	1.58
10888522--10888583	16	3.6	18	71	18	60	32	6	3	58	1.40
10888529--10888598	33	2.1	34	89	2	106	35	8	1	54	1.40
10896035--10896086	16	3.3	15	71	12	50	50	0	0	50	1.00
10899630--10899716	25	3.5	25	82	0	102	29	19	18	32	1.96
10905654--10905779	20	6.3	19	71	9	81	14	26	18	41	1.88
10909898--10910034	70	2.0	70	94	0	238	37	23	8	30	1.85
10911496--10911586	29	3.1	29	87	0	137	23	27	13	36	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10913641--10913679	19	2.1	19	95	0	69	25	30	23	20	1.98
10915765--10915875	51	2.2	51	78	0	123	33	25	16	25	1.96
10918525--10918594	20	3.5	20	71	11	54	35	21	31	11	1.89
10918602--10918639	20	1.9	20	88	0	58	42	21	23	13	1.88
10923843--10923953	50	2.2	50	93	1	186	45	3	40	10	1.57
10924835--10924909	34	2.2	34	80	4	89	33	21	17	28	1.96
10925369--10925758	27	14.4	27	84	2	442	20	15	20	44	1.87
10937243--10937289	2	23.5	2	95	0	85	0	51	0	48	1.00
10941183--10941240	22	2.6	22	81	7	64	41	17	5	36	1.72
10941219--10941273	21	2.7	21	91	5	87	38	14	9	38	1.78
10941829--10942078	44	5.7	44	77	8	186	26	22	20	30	1.98
10942118--10942274	50	3.1	50	75	1	154	26	22	19	30	1.98
10942093--10942274	100	1.8	100	85	2	258	27	21	20	30	1.98
10942313--10942454	45	3.2	45	81	2	178	28	19	21	30	1.97
10942454--10942952	88	5.7	88	89	0	730	21	23	26	28	1.99
10949632--10949670	21	1.9	20	84	5	51	38	12	7	41	1.72
10953864--10953912	23	2.2	23	96	3	91	24	14	18	42	1.87
10971084--10971180	48	2.0	48	100	0	194	35	12	10	42	1.77
10971290--10971362	24	3.1	23	69	21	69	27	12	27	32	1.92
10971274--10971369	48	2.0	48	95	0	174	30	11	26	32	1.91
10975777--10975821	21	2.2	21	96	4	83	40	24	0	35	1.56
10975793--10975884	37	2.5	36	87	7	105	39	21	1	38	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10987881--10988077	50	3.8	52	85	7	242	25	21	30	22	1.99
10987889--10988077	106	1.8	103	84	7	260	25	21	30	22	1.99
10998478--10998549	28	2.6	28	97	0	135	22	23	30	23	1.99
10998906--10998992	27	3.3	26	85	4	111	16	20	20	42	1.89
11000032--11000071	13	3.2	13	85	7	55	65	0	27	7	1.20
11000702--11000758	25	2.3	24	78	3	60	29	19	19	31	1.96
11000763--11000828	25	2.7	26	79	6	68	33	15	28	22	1.94
11017677--11017729	21	2.6	21	80	17	58	28	26	28	16	1.97
11017691--11017731	21	2.0	21	95	0	73	21	24	34	19	1.97
11023385--11023442	29	2.0	29	100	0	116	27	10	34	27	1.89
11026637--11026680	16	2.8	16	73	13	54	27	27	11	34	1.91
11032218--11032268	26	1.9	27	88	4	77	29	21	21	27	1.99
11034975--11035089	46	2.4	46	83	9	135	39	7	1	51	1.41
11035059--11035124	34	2.0	34	91	8	109	45	12	0	42	1.41
11044622--11045077	120	3.8	120	97	0	831	43	0	5	50	1.30
11044859--11045037	56	3.1	54	68	22	164	44	1	5	49	1.33
11045290--11045359	16	4.4	16	88	0	95	25	34	4	35	1.76
11045290--11045354	32	2.0	32	93	0	112	23	35	4	36	1.75
11046402--11046482	26	3.1	26	71	18	78	40	6	1	51	1.35
11046385--11046526	52	2.9	47	83	13	178	41	9	1	47	1.44
11046385--11046526	49	2.9	50	84	12	177	41	9	1	47	1.44
11046466--11046646	94	1.9	95	90	1	292	36	13	4	45	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11052216--11052338	28	4.4	28	83	5	160	29	23	25	21	1.99
11052754--11053187	27	16.1	27	82	4	455	19	17	20	42	1.89
11055349--11055420	36	2.0	36	100	0	144	30	5	19	44	1.73
11070413--11070831	187	2.3	180	88	4	594	42	7	25	24	1.81
11077777--11077814	16	2.4	16	86	0	58	23	39	7	28	1.83
11077767--11077887	62	2.0	62	94	0	215	26	28	10	33	1.90
11077839--11077877	16	2.4	16	91	0	60	28	33	7	30	1.85
11079370--11079522	81	1.9	81	98	0	297	22	8	24	44	1.80
11085223--11085354	40	3.3	40	88	3	169	25	27	21	25	1.99
11085223--11085407	79	2.3	82	82	7	220	25	27	22	25	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221