genome.fa.s26.2.7.7.80.10.50.1000.101.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Length:  64892201

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   

This is table  101  of  221  ( 26413 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31025090--31025123	17	2.0	17	100	0	68	23	17	11	47	1.81
31028715--31028875	29	5.6	29	77	5	173	39	14	26	19	1.90
31028709--31028914	58	3.5	57	75	5	198	38	14	25	21	1.91
31038841--31038930	34	2.6	34	81	6	101	21	23	25	30	1.99
31041264--31041299	18	2.0	18	100	0	72	16	22	22	38	1.93
31042760--31042800	18	2.3	19	83	12	59	4	17	2	75	1.08
31045579--31045664	34	2.5	33	81	5	100	25	18	25	30	1.98
31047809--31047888	34	2.4	34	84	0	106	25	21	23	30	1.99
31050101--31050136	18	2.0	18	100	0	72	16	22	22	38	1.93
31051601--31051640	12	3.3	12	83	13	55	7	15	0	77	0.98
31054404--31054489	34	2.5	33	85	5	109	25	19	25	29	1.99
31067823--31067857	18	1.9	18	88	0	52	11	2	2	82	0.88
31077784--31077867	25	3.4	24	75	8	71	30	17	5	45	1.73
31088545--31088604	29	2.1	29	100	0	120	41	20	15	23	1.89
31093881--31093914	18	1.9	17	88	5	50	61	14	5	17	1.52
31094679--31094727	3	16.3	3	82	0	62	63	6	2	28	1.30
31100307--31100352	21	2.3	20	78	14	51	28	6	19	45	1.75
31101746--31101784	20	2.0	20	90	10	62	15	23	5	56	1.59
31102040--31102227	50	3.6	50	78	7	153	26	26	19	28	1.99
31137510--31137566	16	3.5	17	73	9	55	3	15	1	78	0.96
31137514--31137567	22	2.5	22	84	0	63	3	16	1	77	1.00
31139631--31139768	57	2.4	60	89	6	205	61	2	8	27	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31139631--31139786	57	2.7	58	86	7	196	61	1	8	27	1.37
31141874--31142012	49	2.8	49	75	4	136	24	20	22	33	1.97
31141826--31142012	99	1.9	100	84	1	250	25	17	23	33	1.96
31142035--31142844	44	18.5	44	71	9	410	28	20	18	32	1.96
31142008--31142845	219	3.8	219	95	0	1478	28	21	18	32	1.96
31142591--31143019	175	2.5	174	89	0	626	27	20	17	33	1.96
31142026--31143033	438	2.3	433	87	3	1340	28	21	17	33	1.96
31142254--31142973	88	8.3	85	69	10	290	28	20	17	32	1.96
31142909--31143019	44	2.5	43	85	5	141	28	18	16	36	1.93
31142026--31143033	219	4.6	216	89	2	995	28	21	17	33	1.96
31143036--31143279	129	1.9	129	94	1	436	23	24	20	31	1.98
31148975--31149109	30	4.7	29	70	21	106	62	2	8	26	1.37
31148975--31149109	18	7.2	17	65	18	63	62	2	8	26	1.37
31148975--31149109	56	2.4	58	90	5	204	62	2	8	26	1.37
31156085--31156277	50	3.7	50	80	5	199	27	19	27	24	1.99
31156526--31156564	12	3.2	12	85	0	51	51	5	23	20	1.67
31163282--31163524	50	4.7	50	81	3	216	26	22	27	23	1.99
31163826--31164042	107	2.0	107	97	0	407	27	9	11	51	1.68
31168763--31168947	101	1.8	101	89	3	291	23	17	27	31	1.97
31168757--31168949	51	3.8	50	83	6	239	23	16	27	32	1.96
31169173--31169204	16	2.0	16	93	0	55	59	0	15	25	1.36
31172728--31172830	34	3.0	34	98	0	197	47	6	16	29	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31172729--31172818	18	5.2	18	62	20	57	50	5	15	28	1.67
31174020--31174190	57	2.9	59	75	8	197	30	20	8	40	1.83
31197749--31197806	28	2.1	28	90	0	89	44	22	15	17	1.86
31202607--31202776	40	4.3	40	85	1	207	23	21	30	24	1.99
31202629--31202811	79	2.3	80	80	1	208	25	21	29	24	1.99
31210517--31210686	40	4.3	40	83	4	200	24	21	29	24	1.99
31210539--31210721	79	2.3	79	80	5	199	25	21	28	24	1.99
31221406--31221435	14	2.1	14	100	0	60	80	6	6	6	1.04
31226944--31226987	22	2.0	22	100	0	88	27	0	27	45	1.54
31229470--31229498	4	7.2	4	100	0	58	75	0	24	0	0.80
31238010--31238077	16	4.2	16	94	0	118	27	0	36	35	1.58
31238065--31238155	44	2.0	44	85	2	119	35	5	27	31	1.80
31238063--31238167	44	2.5	40	73	16	113	34	5	28	31	1.81
31238293--31238334	15	2.7	16	82	14	52	52	2	0	45	1.13
31238302--31238343	15	2.9	15	82	10	52	52	0	0	47	1.00
31238328--31238515	61	3.1	61	71	11	215	49	7	1	41	1.40
31238296--31238525	120	1.9	120	99	0	451	50	6	1	41	1.40
31238331--31238514	59	3.1	59	67	17	180	49	7	1	41	1.41
31239030--31239113	42	2.0	42	97	0	159	36	2	10	50	1.50
31240109--31240160	19	2.8	19	88	2	79	32	1	0	65	1.04
31240108--31240168	9	6.4	10	74	14	58	31	1	1	65	1.12
31240107--31240167	19	3.3	18	78	13	70	32	1	1	63	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31241085--31241251	82	2.0	83	97	1	318	46	15	12	25	1.81
31241618--31241652	10	3.6	10	88	7	54	71	5	0	22	1.07
31246528--31246561	15	2.3	15	94	0	59	35	20	8	35	1.84
31251378--31251433	23	2.4	24	82	11	71	23	3	0	73	0.99
31257842--31257892	3	16.7	3	77	18	52	27	0	0	72	0.85
31257857--31257892	7	5.4	7	90	9	58	27	0	0	72	0.85
31257844--31257891	23	2.0	24	88	11	73	25	0	0	75	0.81
31260656--31260697	3	14.0	3	100	0	84	33	0	0	66	0.92
31262209--31262256	6	7.7	6	78	17	53	12	0	6	81	0.87
31262209--31262256	11	3.8	12	75	20	53	12	0	6	81	0.87
31265286--31265321	11	3.3	11	88	0	54	41	27	8	22	1.82
31272284--31272336	14	3.7	14	77	5	61	79	1	0	18	0.83
31272307--31272348	20	2.1	20	91	8	68	71	2	0	26	0.98
31272647--31272690	11	3.8	11	88	8	61	65	4	0	29	1.12
31274588--31274639	24	2.2	24	89	0	77	34	3	7	53	1.48
31282247--31282308	31	2.0	31	93	0	106	29	20	24	25	1.99
31285740--31285796	27	2.1	27	90	0	87	28	29	17	24	1.97
31296363--31296456	46	2.0	46	89	0	143	48	18	9	23	1.77
31296773--31296807	6	5.8	6	100	0	70	0	17	14	68	1.21
31296771--31296826	6	9.3	6	92	0	58	1	25	8	64	1.32
31302014--31302259	50	4.9	50	86	0	305	22	31	19	25	1.98
31302277--31302372	44	2.2	44	94	1	165	26	20	12	40	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31309083--31309151	27	2.5	28	74	4	70	5	23	0	71	1.08
31310922--31311003	41	2.0	42	85	2	112	34	26	24	14	1.94
31311851--31311898	25	1.9	25	82	0	60	20	33	22	22	1.97
31323522--31323548	5	5.4	5	100	0	54	44	18	18	18	1.87
31324287--31324312	7	3.7	7	100	0	52	15	0	69	15	1.20
31332153--31332195	15	2.9	15	83	13	54	32	0	20	46	1.51
31332231--31332368	39	3.5	39	93	2	224	32	2	19	45	1.62
31332254--31332345	8	11.8	8	71	13	57	32	1	18	47	1.56
31335327--31335400	30	2.5	28	79	14	76	64	2	1	31	1.15
31335875--31335921	15	3.1	16	81	6	53	42	0	0	57	0.98
31335895--31335935	18	2.2	19	86	4	57	58	2	0	39	1.11
31336535--31336569	18	1.9	18	88	0	52	65	11	2	20	1.37
31337149--31337194	17	2.9	16	78	12	51	47	4	0	47	1.21
31337162--31337233	23	3.5	19	75	20	65	44	2	0	52	1.15
31337164--31337211	23	2.2	23	88	7	73	43	4	0	52	1.20
31337173--31337218	23	2.0	23	95	0	83	36	4	0	58	1.18
31337610--31337644	17	2.1	17	88	0	52	34	5	20	40	1.76
31353552--31353622	18	3.9	18	68	5	54	19	11	9	59	1.59
31361361--31361669	44	6.9	44	73	7	219	33	17	20	28	1.95
31361310--31361686	44	8.4	44	72	9	217	33	17	19	29	1.95
31361858--31361982	44	2.9	44	79	3	128	33	16	19	31	1.93
31361947--31362151	44	4.7	44	67	8	150	31	16	20	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31361941--31362223	129	2.2	129	82	3	354	31	17	19	30	1.95
31362623--31362661	14	2.7	15	80	11	55	41	10	15	33	1.81
31362635--31362700	34	1.9	35	87	3	98	33	9	12	45	1.73
31382107--31382137	16	2.0	15	93	6	53	35	6	12	45	1.68
31382170--31382194	7	3.6	7	100	0	50	36	0	16	48	1.46
31382229--31382253	12	2.1	12	100	0	50	32	24	20	24	1.98
31382223--31382270	17	3.1	17	75	25	61	29	18	27	25	1.98
31399876--31399959	37	2.3	37	87	4	116	25	10	27	36	1.89
31413532--31413893	130	2.8	128	84	4	451	25	20	20	33	1.97
31413537--31413888	44	8.1	44	69	10	197	26	20	20	33	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221