genome.fa.s26.2.7.7.80.10.50.1000.110.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Length:  64892201

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   

This is table  110  of  221  ( 26413 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33743265--33743293	10	2.7	11	94	5	51	6	3	6	82	0.93
33744706--33744752	20	2.3	20	85	0	67	21	12	36	29	1.91
33754696--33754883	27	7.0	27	89	1	245	29	27	8	34	1.86
33765872--33765964	19	5.1	19	72	17	88	31	10	11	46	1.75
33765853--33765974	54	2.3	54	94	0	217	32	10	14	41	1.81
33770192--33770249	22	2.7	22	86	13	93	70	6	0	22	1.10
33770192--33770247	21	2.6	21	88	11	87	71	7	0	21	1.09
33770192--33770247	10	5.2	11	89	10	89	71	7	0	21	1.09
33770288--33770327	14	2.7	14	92	7	62	67	5	10	17	1.37
33777234--33777280	13	3.6	14	91	8	73	78	6	4	10	1.06
33779362--33779388	14	1.9	14	100	0	54	77	7	14	0	0.97
33781900--33781938	20	1.9	21	89	5	62	23	28	12	35	1.91
33782327--33782352	13	2.0	13	100	0	52	46	0	7	46	1.31
33790726--33790812	27	3.3	26	84	6	70	31	31	6	31	1.84
33790743--33790903	27	6.0	27	84	2	198	29	27	8	34	1.87
33790739--33790905	54	3.1	54	85	1	219	28	27	8	35	1.86
33798787--33798817	13	2.5	12	94	5	53	83	3	0	12	0.75
33798856--33798894	15	2.5	15	91	4	60	61	2	12	23	1.43
33814320--33814384	20	3.3	19	73	16	51	38	16	21	23	1.93
33816183--33816230	14	3.2	14	80	11	51	8	16	4	70	1.27
33816213--33816277	31	2.1	29	81	13	69	10	20	0	69	1.18
33816288--33816363	12	6.6	12	77	8	68	9	17	2	71	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33816211--33816341	6	21.7	6	69	6	77	8	18	2	70	1.22
33817414--33817438	12	2.1	12	100	0	50	16	0	8	76	1.02
33827174--33827238	20	3.3	19	73	16	51	38	16	21	23	1.93
33828504--33828537	18	1.9	18	88	5	52	8	35	2	52	1.47
33829623--33829693	12	5.5	13	72	19	51	16	7	4	71	1.24
33831296--33831360	20	3.3	19	73	16	51	38	16	21	23	1.93
33846268--33846314	20	2.3	20	85	0	67	21	12	36	29	1.91
33847985--33848090	48	2.2	48	81	9	128	14	25	1	58	1.46
33849146--33849182	16	2.4	16	86	8	51	2	13	2	81	0.92
33850266--33850312	20	2.3	20	85	0	67	21	12	36	29	1.91
33853135--33853198	19	3.3	19	80	6	58	6	14	3	76	1.10
33854338--33854384	20	2.3	20	85	0	67	21	12	36	29	1.91
33857215--33857248	17	1.9	18	94	5	61	0	8	2	88	0.62
33857214--33857248	9	3.9	9	88	11	54	0	8	2	88	0.61
33858409--33858455	20	2.3	20	85	0	67	21	12	36	29	1.91
33861277--33861308	8	3.9	8	95	4	55	0	9	3	87	0.64
33861275--33861310	19	1.9	18	88	5	54	0	8	2	88	0.59
33862458--33862504	20	2.3	20	85	0	67	21	12	36	29	1.91
33866513--33866559	20	2.3	20	85	0	67	21	12	36	29	1.91
33867697--33867743	20	2.3	20	85	0	67	21	12	36	29	1.91
33869250--33869296	20	2.3	20	85	0	67	21	12	36	29	1.91
33869482--33869598	54	2.1	55	81	7	141	25	21	12	40	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33870222--33870276	20	2.8	20	88	0	83	29	16	29	25	1.97
33872338--33872381	22	2.0	22	95	0	79	25	36	4	34	1.76
33873257--33873297	15	2.7	16	74	11	50	7	26	0	65	1.18
33874340--33874390	22	2.3	22	89	0	75	13	7	3	74	1.18
33874449--33874500	12	4.6	11	84	11	61	13	3	5	76	1.10
33874744--33874807	30	2.1	30	85	5	85	21	20	17	40	1.91
33879499--33879553	15	3.8	15	85	2	69	1	21	1	74	1.01
33881582--33881616	17	2.1	17	88	0	52	25	8	5	60	1.49
33886099--33886126	10	2.8	10	100	0	56	82	7	0	10	0.85
33886099--33886163	11	5.5	11	74	16	51	75	4	6	13	1.15
33886108--33886163	27	2.2	25	81	9	60	75	3	7	14	1.16
33886144--33886227	30	2.8	30	77	16	93	71	4	15	8	1.27
33888817--33888859	18	2.4	18	84	7	52	72	4	18	4	1.20
33888786--33888934	58	2.6	60	73	12	143	66	2	21	9	1.33
33888830--33888866	18	2.1	18	95	5	67	70	5	13	10	1.32
33888875--33888912	13	2.8	13	82	17	51	73	0	18	7	1.06
33888876--33888926	21	2.4	21	74	6	50	74	1	17	5	1.11
33890776--33890821	20	2.3	20	84	0	56	23	19	17	39	1.92
33890767--33890833	30	2.2	30	82	10	75	23	20	17	37	1.94
33894664--33894717	23	2.3	23	90	0	81	77	5	7	9	1.11
33894663--33894720	12	4.9	12	91	4	82	75	5	6	12	1.16
33901407--33901513	56	1.9	56	83	7	137	27	20	12	40	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33902135--33902189	20	2.8	20	85	0	74	30	16	27	25	1.96
33914359--33914386	14	2.0	14	100	0	56	71	7	7	14	1.29
33914427--33914453	1	27.0	1	100	0	54	100	0	0	0	0.00
33915167--33915200	15	2.3	15	89	0	50	35	29	32	2	1.73
33926004--33926028	13	1.9	13	100	0	50	16	32	16	36	1.90
33929145--33929196	23	2.3	22	75	21	54	9	23	1	65	1.32
33929190--33929228	18	2.2	18	85	0	51	12	23	2	61	1.43
33933439--33933495	11	5.2	11	91	8	98	22	0	8	68	1.17
33933438--33933495	21	2.6	23	91	8	102	24	0	8	67	1.18
33934484--33934530	23	2.1	23	84	7	62	51	12	4	31	1.59
33944815--33944845	4	7.8	4	100	0	62	77	0	0	22	0.77
33946001--33946033	4	8.0	4	96	3	57	24	0	3	72	0.98
33948367--33948405	18	2.2	18	85	0	51	58	2	23	15	1.49
33949805--33949838	4	8.0	4	90	9	50	23	0	2	73	0.97
33949788--33949847	22	2.7	22	73	19	61	26	0	6	66	1.16
33952097--33952134	10	3.8	10	83	13	51	26	15	28	28	1.96
33952099--33952145	20	2.3	20	88	0	67	23	14	34	27	1.94
33953650--33953677	7	4.0	7	100	0	56	57	14	14	14	1.66
33965889--33965932	12	3.6	12	75	6	52	72	4	2	20	1.13
33965889--33965937	25	2.0	25	91	0	80	65	4	6	24	1.33
33965979--33966039	26	2.3	27	88	8	90	77	3	8	11	1.11
33966850--33966895	20	2.2	20	84	3	56	65	0	26	8	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33966902--33966937	6	6.0	6	93	0	54	33	0	27	38	1.57
33970433--33970741	40	7.7	40	97	0	537	29	20	28	22	1.98
33985139--33985183	21	2.2	21	84	7	58	48	31	2	17	1.59
33996952--33997021	34	2.1	34	94	0	122	30	12	5	51	1.63
33997931--33997977	18	2.7	17	75	12	51	38	17	2	42	1.61
34006845--34006999	33	4.6	33	72	17	115	34	27	18	19	1.95
34006796--34006976	75	2.4	76	88	1	256	33	26	16	23	1.96
34007019--34007219	51	4.0	51	78	8	221	30	28	16	23	1.96
34009158--34009204	24	2.0	24	83	8	60	17	34	0	48	1.47
34014175--34014223	25	2.0	25	87	0	71	32	18	14	34	1.91
34016714--34016740	5	5.4	5	100	0	54	81	0	0	18	0.69
34017702--34018077	194	1.9	194	87	2	549	30	14	18	36	1.90
34018040--34018135	49	2.0	47	92	8	158	29	3	11	56	1.50
34022738--34022943	27	7.6	27	86	3	252	26	15	28	30	1.96
34022738--34022943	110	1.9	109	84	3	279	26	15	28	30	1.96
34030812--34031017	27	7.6	27	85	3	243	26	14	28	30	1.95
34030812--34031017	110	1.9	109	83	3	270	26	14	28	30	1.95
34032635--34032676	15	2.9	14	80	16	50	78	2	16	2	0.96
34035594--34035982	194	2.0	194	94	0	688	29	15	19	35	1.93
34035946--34036041	49	2.0	47	90	8	149	28	4	11	56	1.53
34037876--34037914	20	2.0	20	89	0	60	41	5	15	38	1.69
34042247--34042325	30	2.7	29	78	5	88	25	3	2	68	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34049654--34049705	3	17.3	3	100	0	104	67	0	0	32	0.91
34054157--34054193	9	4.1	9	85	0	56	29	8	13	48	1.71
34054247--34054277	9	3.4	9	90	0	53	38	22	12	25	1.90
34056536--34056598	30	2.1	30	90	0	99	28	1	11	58	1.41
34059475--34059499	13	1.9	13	100	0	50	56	0	8	36	1.29
34060002--34060071	25	2.7	25	80	4	77	21	25	22	30	1.99
34073324--34073410	44	2.0	44	97	0	165	29	16	19	34	1.93
34081147--34081359	32	6.7	32	77	3	160	36	22	22	19	1.95
34081142--34081359	64	3.4	64	80	3	251	35	22	22	20	1.96
34081359--34081412	26	2.1	26	89	0	81	35	24	22	18	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221