genome.fa.s26.2.7.7.80.10.50.1000.209.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Length:  64892201

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   

This is table  209  of  221  ( 26413 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61423140--61423176	17	2.1	18	85	14	51	35	0	0	64	0.94
61423222--61423287	32	2.0	33	82	8	82	33	4	1	60	1.26
61449968--61450010	17	2.6	17	85	10	54	74	4	0	20	1.00
61451961--61452467	100	5.1	100	91	2	736	24	21	23	30	1.99
61452477--61452614	45	3.1	45	82	2	197	23	26	23	26	2.00
61452472--61452607	44	3.0	45	82	2	193	22	25	25	25	2.00
61458582--61458623	21	2.0	21	86	9	59	47	4	14	33	1.65
61460853--61461049	44	4.5	44	72	9	136	26	23	19	30	1.98
61460846--61461307	122	3.6	125	86	5	597	26	23	19	30	1.98
61472282--61472329	23	2.1	23	96	0	87	41	25	12	20	1.87
61472536--61472566	15	2.1	15	93	0	53	64	6	9	19	1.45
61475834--61475967	64	2.1	64	91	0	214	29	11	17	41	1.84
61476937--61476965	5	5.8	5	100	0	58	82	0	0	17	0.66
61477726--61477806	40	2.0	40	100	0	162	45	12	12	29	1.78
61479734--61479786	26	2.0	26	85	0	70	56	16	5	20	1.60
61486925--61487039	53	2.2	53	96	1	212	48	14	8	27	1.73
61497766--61497956	36	5.0	36	83	12	238	36	13	20	29	1.91
61497730--61498045	82	3.9	81	79	16	366	35	13	22	28	1.93
61497876--61497941	21	3.5	20	63	25	52	34	12	19	33	1.89
61497766--61498002	118	2.0	118	94	0	420	35	13	21	29	1.92
61497920--61498045	46	2.8	46	93	3	213	32	16	23	27	1.96
61499301--61499493	49	3.9	49	94	0	314	24	15	29	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61501669--61501697	4	7.2	4	100	0	58	75	0	0	24	0.80
61502605--61502990	44	8.6	44	70	10	147	27	19	20	32	1.97
61502503--61503004	226	2.2	226	84	1	682	27	19	20	32	1.96
61502829--61503084	44	5.7	45	77	6	209	28	19	19	32	1.97
61502920--61503089	91	1.9	90	83	3	225	26	19	20	33	1.96
61503174--61503381	45	4.7	44	72	17	146	25	21	22	30	1.99
61503366--61503434	36	1.9	36	85	5	95	30	21	17	30	1.96
61503417--61503646	123	1.9	122	84	4	311	28	25	15	31	1.95
61503676--61503968	88	3.3	88	87	0	399	30	25	17	26	1.97
61506250--61506349	47	2.1	47	79	3	112	24	17	28	31	1.97
61509523--61509657	43	3.1	43	64	4	108	25	24	20	29	1.99
61509518--61509857	88	3.9	87	92	3	529	27	23	19	28	1.98
61510171--61510228	24	2.4	24	94	0	98	29	29	10	31	1.90
61520304--61520347	23	1.9	23	86	9	63	20	11	0	68	1.20
61521795--61521824	4	7.5	4	92	0	51	23	3	0	73	0.98
61521892--61521957	15	4.5	14	72	10	51	21	3	3	72	1.11
61524791--61525008	44	5.0	44	78	4	224	27	24	17	29	1.98
61525092--61525420	46	7.3	45	63	12	138	29	23	20	26	1.99
61525016--61525490	134	3.5	134	93	1	779	29	22	21	27	1.99
61525390--61525586	97	2.0	96	93	2	333	27	22	19	30	1.98
61525255--61525817	232	2.4	232	98	0	1083	28	22	20	28	1.98
61525622--61526007	95	4.0	95	98	0	727	27	22	19	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61527868--61527922	12	5.0	10	77	18	56	3	3	12	80	0.98
61527868--61527919	11	4.6	11	81	13	54	3	3	13	78	1.02
61529157--61529340	62	3.0	62	94	0	314	33	4	20	41	1.73
61531386--61531433	26	1.9	25	91	8	80	60	0	12	27	1.32
61532221--61532315	45	2.1	46	82	3	113	40	32	3	24	1.71
61535372--61535444	23	2.9	25	76	14	78	68	4	2	24	1.20
61537802--61537839	17	2.3	17	86	4	51	52	2	13	31	1.54
61537956--61537983	13	2.2	13	100	0	56	46	0	32	21	1.52
61537959--61537992	13	2.5	13	90	4	50	52	0	20	26	1.46
61538173--61538206	7	4.6	7	89	10	50	82	0	0	17	0.67
61539937--61540106	44	3.9	44	84	0	223	26	21	22	29	1.99
61540139--61541047	478	1.9	474	86	4	1283	34	11	21	32	1.90
61541201--61541231	13	2.4	13	94	0	53	32	0	12	54	1.38
61541326--61541619	50	5.8	50	86	1	417	25	23	30	20	1.98
61541326--61541619	101	2.9	101	94	0	500	25	23	30	20	1.98
61543664--61544035	105	3.6	104	91	1	559	18	20	30	30	1.97
61551264--61551314	26	2.0	25	92	3	84	13	23	31	31	1.93
61551229--61551540	102	3.1	102	89	5	479	20	19	29	30	1.97
61551366--61551416	26	2.0	25	88	3	75	15	25	33	25	1.95
61551466--61551518	26	2.0	26	96	0	97	15	22	33	28	1.94
61563018--61563077	31	2.0	30	83	9	77	66	0	6	26	1.16
61564099--61564132	9	3.8	9	85	14	52	20	0	0	79	0.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61566663--61567034	105	3.6	105	91	1	563	30	30	20	18	1.96
61566904--61566956	27	2.0	27	92	3	90	30	33	22	13	1.92
61569195--61569257	30	2.1	30	96	0	117	23	3	15	57	1.53
61580962--61581006	22	1.9	23	86	13	65	55	4	11	28	1.54
61583026--61583086	31	2.0	31	86	0	86	36	9	4	49	1.58
61584405--61584431	13	2.1	13	100	0	54	66	11	7	14	1.43
61585112--61585150	18	2.1	19	90	4	62	38	10	20	30	1.86
61600005--61600074	3	23.3	3	88	5	106	31	2	1	64	1.17
61600517--61600549	15	2.1	16	88	11	50	36	6	3	54	1.41
61600515--61600549	17	2.1	17	94	0	61	37	5	2	54	1.39
61602236--61602280	20	2.2	21	84	11	58	55	4	13	26	1.57
61602476--61602537	28	2.2	28	82	5	72	58	1	4	35	1.29
61602886--61602930	3	15.0	3	85	0	63	64	4	0	31	1.13
61604645--61604770	63	2.0	61	86	7	175	42	16	11	29	1.84
61605068--61605120	3	17.7	3	100	0	106	66	0	0	33	0.92
61605119--61605149	3	10.3	3	100	0	62	32	0	0	67	0.91
61606420--61606468	7	7.0	7	81	9	55	22	0	34	42	1.54
61606431--61606477	21	2.2	22	85	11	62	25	2	25	46	1.64
61607059--61607174	63	1.9	60	80	5	133	21	16	11	50	1.75
61608240--61608269	14	2.1	14	100	0	60	23	23	40	13	1.90
61613279--61613318	13	2.9	14	81	11	55	70	0	0	30	0.88
61615412--61615437	9	2.9	9	100	0	52	65	0	11	23	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61618273--61618310	13	2.9	13	88	7	51	2	15	0	81	0.80
61618709--61618814	30	3.5	30	84	0	140	43	1	16	37	1.60
61618688--61618834	60	2.4	60	80	3	170	41	4	18	35	1.72
61621700--61621886	51	3.7	50	81	4	216	23	17	29	29	1.97
61621704--61621896	101	1.9	101	89	5	300	22	18	30	29	1.97
61621912--61622103	69	2.7	69	86	4	240	21	17	29	31	1.96
61622060--61622220	33	4.7	33	75	21	129	21	21	27	29	1.98
61621989--61622184	103	2.0	96	88	7	284	20	19	28	30	1.97
61622996--61623089	49	1.9	49	82	4	118	27	13	26	31	1.94
61629035--61629347	46	6.6	46	76	17	302	29	24	14	31	1.95
61629076--61629203	62	2.0	64	95	3	233	28	26	12	32	1.93
61629035--61629243	108	1.9	107	97	0	391	28	24	13	32	1.94
61629140--61629347	90	2.3	90	97	0	389	30	24	14	31	1.94
61629140--61629347	46	4.6	47	92	4	319	30	24	14	31	1.94
61631981--61632204	51	4.3	51	82	7	277	28	24	14	33	1.94
61632034--61632204	58	3.1	58	85	7	230	27	23	15	33	1.94
61631990--61632204	109	2.0	109	90	0	340	27	24	15	32	1.95
61638573--61638700	30	4.3	30	78	7	145	35	21	3	39	1.69
61638573--61638706	59	2.2	60	82	3	155	34	23	4	38	1.75
61639204--61639258	15	3.7	16	74	13	55	70	0	29	0	0.87
61639385--61639414	15	1.9	16	93	6	53	76	6	16	0	0.99
61639570--61639656	10	8.8	10	75	14	83	79	0	20	0	0.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61639570--61639646	11	7.1	11	73	15	54	80	0	19	0	0.71
61639572--61639649	38	2.1	38	87	4	113	79	0	20	0	0.73
61639571--61639656	29	3.0	29	78	13	97	79	0	20	0	0.74
61639982--61640048	17	3.8	16	76	19	62	25	16	13	44	1.84
61639974--61640050	16	4.4	17	72	19	68	29	16	11	41	1.84
61640208--61640360	18	8.6	18	81	3	150	27	11	9	50	1.70
61640178--61640360	36	5.2	36	76	7	144	28	12	9	49	1.71
61640253--61640365	17	6.5	17	76	13	70	30	14	8	46	1.75
61646005--61646048	13	3.1	14	87	9	63	84	11	2	2	0.81
61646005--61646065	13	4.6	13	83	8	61	83	8	4	3	0.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221