genome.fa.s26.2.7.7.80.10.50.1000.152.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Length:  64892201

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   

This is table  152  of  221  ( 26413 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46107767--46107830	31	2.1	31	100	0	128	42	17	18	21	1.89
46110288--46110499	14	14.6	14	75	8	93	0	55	0	43	1.06
46110288--46110499	8	27.4	8	72	6	141	0	55	0	43	1.06
46110288--46110495	60	3.4	61	79	12	221	0	55	0	43	1.06
46110288--46110499	6	36.5	6	75	5	141	0	55	0	43	1.06
46113307--46113383	14	5.0	15	71	20	52	42	15	9	32	1.78
46113323--46113362	20	2.0	20	90	0	62	50	12	10	27	1.72
46113311--46113377	34	1.9	35	90	3	109	46	13	8	31	1.74
46113346--46113385	14	2.9	14	84	0	53	42	17	7	32	1.77
46114857--46115343	242	2.0	242	97	0	911	32	13	22	30	1.93
46118868--46118938	33	2.2	33	100	0	142	45	25	2	26	1.67
46124662--46124891	114	2.0	114	94	1	408	32	12	24	31	1.92
46135758--46135950	98	2.0	95	87	3	278	29	17	20	32	1.95
46143771--46143819	20	2.3	23	79	13	59	32	8	2	57	1.40
46149753--46149806	17	3.4	16	73	23	51	37	0	1	61	1.07
46158149--46158173	12	2.1	12	100	0	50	48	0	0	52	1.00
46158227--46158360	58	2.3	59	80	8	139	43	2	5	48	1.39
46160753--46160805	16	3.3	16	76	10	54	50	0	3	45	1.19
46160756--46160795	21	2.0	20	85	5	53	50	0	2	47	1.14
46160744--46160873	68	1.9	68	87	3	190	51	3	3	40	1.38
46174387--46174513	11	10.8	12	67	26	60	50	1	3	44	1.30
46174391--46174433	21	2.1	20	82	4	50	48	0	4	46	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46174379--46174513	68	2.0	69	92	1	227	49	2	3	43	1.35
46179335--46179363	5	5.8	5	100	0	58	17	62	0	20	1.33
46189226--46189789	272	2.1	275	97	1	1071	42	5	17	34	1.72
46189946--46190048	29	3.6	29	70	0	98	19	23	18	38	1.93
46193677--46193713	19	2.0	20	84	10	51	70	2	24	2	1.14
46196576--46196620	19	2.4	19	88	0	63	22	6	31	40	1.80
46200735--46200870	51	2.7	51	77	0	155	39	6	12	41	1.69
46203538--46203673	51	2.7	51	77	0	155	39	6	12	41	1.69
46206466--46206652	98	1.9	98	84	4	252	37	10	17	34	1.84
46217530--46217573	22	2.0	23	86	4	63	54	11	4	29	1.56
46220786--46220883	51	1.9	51	85	0	133	32	13	8	45	1.72
46228344--46228384	17	2.3	19	83	8	59	58	4	2	34	1.32
46234225--46234262	14	2.7	14	88	8	51	84	5	10	0	0.77
46235617--46235646	16	1.9	15	93	6	51	13	6	66	13	1.43
46237221--46237245	7	3.6	7	100	0	50	64	0	36	0	0.94
46237371--46237630	50	5.2	50	88	3	303	28	24	16	31	1.96
46237405--46237787	51	7.6	51	80	6	265	29	24	15	30	1.96
46237550--46237787	102	2.3	102	89	4	356	31	25	14	28	1.95
46244995--46245383	51	7.7	50	80	7	396	28	25	16	29	1.97
46248945--46248969	13	1.9	13	100	0	50	28	8	40	24	1.83
46257966--46258030	25	2.5	25	82	7	76	40	21	21	16	1.92
46257987--46258060	25	3.0	25	83	0	94	36	20	22	20	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46259751--46259815	28	2.4	28	82	10	80	41	6	9	43	1.61
46264952--46265135	40	4.6	39	81	8	192	27	27	21	24	1.99
46264950--46265135	80	2.3	80	84	9	238	27	27	20	24	1.99
46272861--46273082	40	5.5	41	80	6	215	27	27	20	25	1.99
46272902--46273082	81	2.2	80	86	8	244	26	27	20	24	1.99
46275863--46275911	25	2.0	25	83	0	62	38	0	16	44	1.48
46278374--46278401	14	2.0	14	100	0	56	28	0	0	71	0.86
46279432--46279532	19	4.7	22	83	11	106	38	15	7	37	1.77
46279470--46279532	19	3.3	19	90	0	108	38	15	7	38	1.77
46280051--46280547	44	11.4	44	70	10	193	26	22	21	29	1.99
46280121--46280564	217	2.0	218	88	2	662	26	23	20	29	1.99
46280913--46281120	44	4.7	44	86	4	251	31	25	15	26	1.96
46280913--46281112	88	2.3	88	87	3	278	31	27	14	27	1.95
46282363--46282400	10	3.8	10	86	10	51	0	21	0	78	0.74
46282372--46282408	11	3.4	11	92	7	58	0	18	0	81	0.70
46287616--46287659	22	2.0	22	90	4	70	40	18	4	36	1.71
46287616--46287702	19	3.9	24	77	18	82	40	18	5	35	1.75
46287654--46287716	19	3.3	19	93	0	108	38	19	7	34	1.81
46289112--46289177	31	2.2	29	86	5	87	31	12	15	40	1.83
46289112--46289191	29	2.6	30	86	5	99	31	10	15	43	1.79
46289137--46289200	30	2.2	29	82	2	74	32	10	10	45	1.74
46292558--46292624	25	2.7	25	80	0	80	20	31	22	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46295494--46295532	11	3.4	11	83	13	51	61	0	0	38	0.96
46295485--46295545	25	2.4	25	81	13	72	59	1	0	39	1.08
46295484--46295535	13	3.9	14	78	17	56	57	1	0	40	1.10
46296047--46296088	18	2.3	18	81	18	52	38	2	2	57	1.25
46296427--46296463	3	12.3	3	100	0	74	67	0	0	32	0.91
46298264--46298323	25	2.3	26	85	5	86	38	10	16	35	1.82
46298264--46298335	25	2.8	25	78	4	81	37	8	20	33	1.83
46303234--46303274	20	2.0	20	100	0	82	34	4	29	31	1.79
46304654--46305001	174	2.0	174	94	0	615	33	9	21	35	1.86
46305481--46305517	18	2.0	19	89	5	58	45	0	32	21	1.52
46309354--46309400	20	2.2	22	77	11	53	17	38	0	44	1.48
46316501--46316576	27	2.8	27	79	0	89	21	26	14	38	1.91
46318280--46318328	19	2.5	19	83	3	53	24	26	2	46	1.63
46319509--46319539	3	10.0	3	93	6	53	35	0	0	64	0.94
46321524--46321567	18	2.5	16	77	22	52	47	0	6	45	1.29
46325374--46325398	13	1.9	13	100	0	50	64	0	0	36	0.94
46325371--46325405	11	3.0	11	84	15	52	62	0	0	37	0.95
46325508--46325542	17	2.1	17	89	10	54	31	2	0	65	1.07
46344308--46344361	18	3.0	18	75	5	56	40	3	18	37	1.69
46345426--46345490	3	21.7	3	100	0	130	33	0	0	66	0.92
46346126--46346163	20	1.9	20	100	0	76	39	18	31	10	1.85
46348516--46348597	38	2.1	39	82	6	96	47	6	4	41	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46352970--46353008	20	2.0	20	84	0	51	10	15	12	61	1.56
46352976--46353029	21	2.4	23	77	17	60	7	9	16	66	1.42
46353847--46353885	20	2.0	20	95	5	71	51	2	5	41	1.38
46353848--46353886	19	2.0	20	90	5	62	51	2	7	38	1.44
46354707--46354753	24	2.0	24	84	16	62	34	0	14	51	1.43
46354912--46355046	40	3.4	40	74	7	123	26	17	24	31	1.97
46359289--46359403	27	4.3	27	82	2	133	45	20	18	16	1.86
46359289--46359405	54	2.2	54	85	3	155	44	19	18	17	1.87
46359790--46359856	28	2.4	28	94	0	116	23	26	22	26	2.00
46362259--46362338	41	2.0	41	87	0	115	32	28	20	18	1.96
46362311--46362361	16	3.4	16	73	15	63	29	25	25	19	1.99
46362310--46362367	29	2.0	29	100	0	116	31	24	24	20	1.98
46362270--46362408	70	2.0	70	92	0	233	31	26	20	20	1.98
46362339--46362482	41	3.5	41	95	0	243	31	28	20	19	1.97
46362622--46362732	47	2.3	49	81	4	127	38	14	6	40	1.71
46362806--46362987	91	2.0	91	98	0	355	34	20	4	41	1.72
46369081--46369134	20	2.6	21	82	11	67	64	0	7	27	1.20
46386424--46386463	21	2.0	20	90	5	62	50	0	5	45	1.23
46387376--46387410	18	1.9	18	88	0	52	80	2	5	11	1.00
46398040--46398108	3	24.0	3	79	8	54	56	0	8	34	1.30
46398048--46398098	15	3.5	15	84	10	70	52	0	11	35	1.38
46399888--46400039	40	3.8	40	81	10	173	26	21	23	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46399887--46400040	82	1.9	82	88	0	236	25	20	23	29	1.99
46400014--46400661	130	5.0	131	85	4	846	27	22	20	29	1.99
46400331--46400501	43	3.9	43	67	5	110	27	23	20	28	1.99
46400014--46400661	263	2.5	261	87	4	887	27	22	20	29	1.99
46400570--46400725	45	3.4	45	67	18	129	28	25	18	28	1.98
46400568--46400761	95	2.0	95	96	0	361	27	23	19	28	1.98
46400663--46401099	46	9.7	46	63	10	170	29	23	20	27	1.99
46400663--46401166	134	3.7	134	95	1	882	28	22	20	28	1.98
46400175--46401261	500	2.2	487	84	4	1358	28	22	20	28	1.99
46401066--46401444	182	2.0	188	91	5	626	27	22	19	30	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221