Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Length:  64892201

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   

This is table  212  of  221  ( 26413 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61904698--61904738
6
7.0
6
86
2
57
2
19
31
46
1.63
61905346--61905403
30
1.9
30
89
0
89
50
10
10
29
1.70
61906420--61906583
6
28.3
6
80
7
178
0
16
33
50
1.46
61906624--61906687
12
5.1
12
78
10
56
4
17
35
42
1.70
61908639--61908673
10
3.6
10
88
3
54
0
8
0
91
0.42
61908638--61908675
16
2.4
16
95
4
69
0
10
0
89
0.49
61912352--61912474
31
4.0
31
78
6
101
38
17
10
34
1.84
61920719--61921501
242
3.2
240
76
8
568
35
17
14
32
1.90
61941645--61942095
235
1.9
231
86
6
642
42
8
7
42
1.63
61952042--61952079
19
2.0
19
85
10
51
18
7
13
60
1.56
61962550--61962597
25
1.9
25
82
0
60
56
0
6
37
1.25
61964833--61964875
23
2.0
21
82
13
52
76
2
16
4
1.05
61971525--61971581
28
2.0
28
100
0
114
35
7
21
36
1.80
61971660--61971684
9
2.8
9
100
0
50
60
24
8
8
1.52
61972992--61973047
29
1.9
29
88
0
85
48
19
10
21
1.79
61973175--61973221
22
2.4
18
75
24
58
23
10
19
46
1.80
61973180--61973222
22
2.0
22
100
0
86
23
9
20
46
1.79
61974666--61974701
3
12.0
3
87
0
54
38
27
33
0
1.57
61974818--61974852
6
5.8
6
86
0
52
31
0
54
14
1.40
61979144--61979181
18
2.1
18
95
0
67
55
5
13
26
1.59
61985885--61985950
11
6.4
11
77
21
63
59
0
1
39
1.07
61985885--61986008
39
3.1
39
87
9
180
60
0
3
36
1.13
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61995092--61995127
18
1.9
20
88
11
58
47
2
16
33
1.61
61995090--61995133
20
2.3
19
81
18
56
50
2
13
34
1.55
61995474--61995511
18
2.1
19
85
5
51
57
7
7
26
1.54
61996987--61997430
88
5.1
88
84
3
470
24
24
22
27
2.00
61997061--61997199
44
3.2
44
66
15
115
23
23
26
26
2.00
61997032--61997167
44
3.1
43
67
15
116
25
27
22
25
2.00
61999114--61999161
12
3.9
12
80
2
51
8
2
8
81
0.96
62004092--62004127
18
1.9
20
88
11
58
47
2
16
33
1.61
62004090--62004133
20
2.3
19
81
18
56
50
2
13
34
1.55
62004475--62004512
18
2.1
19
85
5
51
57
7
7
26
1.54
62011930--62011985
29
1.9
29
85
7
78
37
12
8
41
1.74
62029970--62030093
30
4.1
30
93
1
203
25
24
6
43
1.78
62029980--62030087
15
7.2
15
67
12
78
25
22
7
44
1.79
62034661--62034784
30
4.1
30
91
1
185
25
22
6
45
1.76
62034671--62034778
15
7.2
15
67
12
60
25
20
7
46
1.77
62039565--62039610
18
2.4
20
85
7
60
67
2
30
0
1.03
62049623--62049653
15
2.1
15
100
0
62
22
6
12
58
1.58
62051583--62051611
3
9.7
3
100
0
58
34
0
0
65
0.93
62051844--62051894
21
2.6
21
85
14
65
39
0
0
60
0.97
62051843--62051894
9
5.4
9
80
19
61
38
0
0
61
0.96
62060658--62060686
13
2.1
14
93
6
51
58
3
31
6
1.41
62070099--62070195
27
3.0
35
63
27
95
17
17
12
52
1.74
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
62070684--62070788
52
2.0
52
92
0
174
44
13
15
26
1.83
62078182--62078215
5
6.6
5
86
6
50
79
0
0
20
0.73
62078180--62078215
16
2.2
16
95
0
63
77
0
0
22
0.76
62104111--62104187
36
2.1
36
81
9
86
53
3
9
33
1.51
62104321--62104373
3
17.7
3
80
7
63
62
1
5
30
1.29
62109248--62109277
2
15.5
2
93
6
53
50
0
0
50
1.00
62111265--62111295
14
2.2
14
100
0
62
32
0
16
51
1.44
62112157--62112728
246
2.3
245
92
1
932
36
13
15
35
1.86
62117273--62117351
28
2.7
30
70
7
72
44
3
17
34
1.67
62117588--62117648
28
2.2
28
87
0
86
24
22
13
39
1.90
62120589--62120615
8
3.4
8
100
0
54
55
0
0
44
0.99
62120597--62120654
30
1.9
31
85
3
82
53
1
6
37
1.38
62120735--62120784
18
2.8
18
100
0
100
28
22
22
28
1.99
62121108--62121180
9
8.2
9
92
1
94
26
10
23
39
1.87
62121341--62121365
12
2.1
12
100
0
50
16
24
36
24
1.94
62126005--62126042
16
2.4
16
95
0
67
36
0
2
60
1.11
62126851--62126899
15
3.2
15
91
2
71
42
0
2
55
1.11
62125499--62128072
859
3.0
859
91
1
4240
36
13
16
33
1.88
62125509--62128072
852
3.0
852
91
1
4199
36
13
16
33
1.88
62127703--62127753
16
3.2
16
85
0
66
39
0
0
60
0.97
62131195--62131314
26
4.8
26
79
11
117
20
25
20
32
1.97
62134995--62135033
17
2.4
16
84
16
53
0
15
10
74
1.07
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
62138995--62139052
29
2.0
29
100
0
116
34
0
20
44
1.52
62139088--62139166
34
2.2
35
80
8
88
54
1
3
40
1.26
62141246--62141274
15
2.0
15
93
6
51
51
0
0
48
1.00
62142979--62143058
36
2.3
35
91
4
126
53
10
1
35
1.42
62147518--62147583
18
3.3
18
66
22
51
31
19
3
45
1.66
62148846--62148877
3
10.7
3
93
0
55
65
0
31
3
1.08
62152627--62152659
17
1.9
18
88
11
52
42
12
0
45
1.41
62154635--62154680
22
2.1
21
88
4
65
47
34
2
15
1.57
62162387--62162422
2
18.0
2
94
0
63
2
0
47
50
1.15
62170966--62171044
31
2.6
30
78
5
88
37
10
12
39
1.77
62172341--62172421
40
2.0
40
100
0
162
30
22
14
32
1.94
62175660--62175740
38
2.1
38
97
0
153
46
14
2
35
1.58
62176451--62176522
35
2.1
35
100
0
144
44
13
13
27
1.82
62183928--62183980
19
2.8
20
80
5
65
33
0
1
64
1.05
62183928--62183978
10
5.3
10
81
6
61
31
0
1
66
1.03
62183910--62183978
29
2.4
29
85
0
93
34
0
5
59
1.21
62185954--62186014
32
1.9
32
96
0
113
36
13
16
34
1.87
62187592--62187787
98
2.0
98
100
0
392
21
11
16
51
1.75
62194756--62194802
20
2.4
19
80
19
53
40
0
2
57
1.11
62201658--62201711
27
2.1
26
83
10
67
27
14
1
55
1.50
62213961--62214009
3
16.7
3
95
4
91
32
0
0
67
0.91
62216355--62216385
16
1.9
16
93
0
53
35
6
9
48
1.62
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
62217076--62217131
24
2.3
24
75
6
60
41
0
0
58
0.98
62218338--62218392
19
2.8
20
78
10
69
60
3
0
36
1.15
62218587--62218642
29
2.0
29
89
10
89
57
1
0
41
1.09
62218592--62218675
37
2.2
38
77
12
102
61
2
0
35
1.09
62218628--62218680
20
2.6
19
74
11
52
62
1
0
35
1.06
62219040--62219070
16
1.9
16
100
0
62
38
6
16
38
1.74
62219041--62219078
16
2.4
16
90
0
58
44
5
10
39
1.61
62219770--62219832
33
2.0
31
81
12
74
26
6
4
61
1.40
62219809--62219906
37
2.7
37
81
10
105
28
9
7
55
1.58
62221619--62221721
43
2.4
43
95
0
179
43
22
7
26
1.80
62227432--62227534
36
2.9
36
100
0
206
36
22
12
28
1.91
62228181--62228229
20
2.5
20
77
12
55
55
0
0
44
0.99
62229691--62229718
11
2.5
11
100
0
56
60
0
0
39
0.97
62230058--62230082
10
2.5
10
100
0
50
32
0
20
48
1.50
62231643--62231700
30
1.9
30
96
0
107
24
22
20
32
1.98
62235410--62235451
21
2.0
21
81
9
50
35
14
26
23
1.93
62236094--62236152
29
2.0
31
86
6
86
38
0
40
20
1.53
62236257--62236317
30
2.0
31
90
3
97
39
0
40
19
1.52
62236366--62236402
9
4.1
9
92
0
65
29
10
13
45
1.77
62237044--62237130
44
2.0
44
88
0
129
31
18
22
27
1.97
62238509--62238541
18
1.9
17
88
11
50
48
0
15
36
1.45
62241203--62241358
41
3.8
41
97
0
285
29
21
22
26
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
62241572--62241634
33
1.9
32
90
3
99
25
9
25
39
1.86
62241578--62241651
33
2.3
33
80
2
87
28
8
25
37
1.84
62242834--62243064
46
5.0
46
92
0
372
35
9
26
29
1.87
62243702--62243726
11
2.3
11
100
0
50
8
8
0
84
0.79
62244332--62244429
3
33.0
3
79
6
74
35
4
4
56
1.37
62244552--62244639
2
44.5
2
78
6
54
39
3
0
56
1.16
62259328--62259368
21
2.0
21
90
0
64
29
21
29
19
1.98
62263021--62263059
20
2.0
20
85
10
53
61
0
0
38
0.96
62266224--62266264
21
1.9
22
95
5
75
41
4
0
53
1.22
62270394--62270443
25
2.0
25
100
0
100
28
16
20
36
1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221