genome.fa.s26.2.7.7.80.10.50.1000.141.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Length:  64892201

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   

This is table  141  of  221  ( 26413 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43363449--43363615	40	4.2	40	89	0	219	26	27	20	25	1.99
43363454--43363671	40	5.5	40	84	3	199	26	27	21	25	1.99
43363414--43363671	80	3.3	79	80	3	223	25	27	20	26	1.99
43377232--43377310	30	2.6	29	71	15	70	26	26	12	34	1.92
43378759--43378836	36	2.2	36	85	0	102	23	33	15	28	1.95
43378824--43378967	35	4.0	35	77	13	125	23	29	20	26	1.99
43378858--43378996	70	2.0	69	80	9	158	25	28	20	25	1.99
43378977--43379069	36	2.6	36	77	0	96	21	29	19	30	1.97
43378980--43379209	107	2.2	106	79	7	243	23	28	18	29	1.98
43384746--43384782	19	1.9	19	100	0	74	37	10	13	37	1.80
43397263--43397312	23	2.1	24	88	3	75	12	52	0	36	1.39
43397263--43397321	7	8.4	7	82	14	59	13	50	0	35	1.42
43404118--43404155	20	1.9	20	89	10	60	34	0	5	60	1.19
43408019--43408053	16	2.1	17	89	5	54	11	51	0	37	1.38
43409983--43410017	5	6.8	5	93	6	61	0	20	0	80	0.72
43409989--43410024	16	2.2	16	90	0	54	2	19	0	77	0.88
43411064--43411101	20	1.9	20	89	10	60	31	34	7	26	1.85
43411777--43411819	22	2.0	22	85	0	59	27	4	13	53	1.60
43416866--43416906	18	2.3	19	83	8	59	46	17	0	36	1.48
43423811--43424374	49	11.9	49	91	6	900	32	7	29	30	1.86
43423811--43424374	189	3.0	190	91	4	903	32	7	29	30	1.86
43423811--43424374	281	2.0	283	92	5	935	32	7	29	30	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43425716--43426098	40	9.6	40	91	1	572	24	20	27	26	1.99
43443292--43443329	18	2.2	18	85	4	51	65	0	0	34	0.93
43450831--43451056	88	2.6	86	82	4	267	47	9	9	33	1.68
43450831--43451101	87	3.1	85	81	6	303	45	9	11	33	1.73
43451228--43451281	21	2.7	20	80	11	58	68	0	0	31	0.90
43451230--43451297	27	2.4	26	81	18	75	61	0	0	38	0.96
43453556--43453596	8	5.1	8	96	0	73	48	36	14	0	1.44
43464076--43464135	31	2.0	30	86	3	84	50	5	0	45	1.23
43464839--43464898	30	2.0	31	83	9	79	20	38	1	40	1.62
43465142--43465188	17	2.8	17	79	20	62	36	2	6	55	1.37
43467432--43467478	10	4.9	10	89	7	62	61	4	0	34	1.15
43467434--43467478	19	2.4	19	84	0	63	62	4	0	33	1.15
43474959--43474992	13	2.5	13	90	4	50	52	5	2	38	1.41
43477071--43477105	15	2.2	16	95	5	63	37	0	11	51	1.38
43477968--43478001	14	2.3	15	90	5	52	17	26	2	52	1.58
43479705--43479737	17	1.9	17	100	0	66	36	6	6	51	1.51
43479698--43479754	30	1.9	30	92	0	96	33	7	3	56	1.43
43479698--43479750	13	3.8	13	77	18	52	33	7	3	54	1.46
43479746--43479785	16	2.6	15	92	7	71	42	0	5	52	1.23
43479824--43479942	15	7.6	15	65	20	57	51	15	1	31	1.53
43479847--43479904	21	2.8	20	84	7	80	43	17	3	36	1.66
43479944--43480018	21	3.6	21	78	10	64	44	20	2	33	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43480000--43480618	9	72.3	9	65	18	202	44	20	2	32	1.65
43480009--43480276	16	15.8	17	67	20	84	47	19	2	31	1.62
43480055--43480564	34	14.7	34	64	17	142	45	20	2	31	1.66
43480006--43480276	25	10.7	26	67	19	119	47	19	2	31	1.61
43480214--43480553	69	4.9	69	90	0	529	42	22	3	31	1.70
43480214--43480553	138	2.5	138	96	0	610	42	22	3	31	1.70
43480508--43480589	25	3.3	25	82	0	101	47	15	2	34	1.59
43480880--43480905	7	3.7	7	100	0	52	11	0	46	42	1.40
43490002--43490053	19	2.7	19	93	3	86	61	5	0	32	1.20
43490124--43490151	10	2.8	10	100	0	56	50	7	0	42	1.30
43490123--43490194	10	7.6	9	78	6	54	50	4	0	45	1.21
43490124--43490174	19	2.6	19	84	3	57	52	3	0	43	1.19
43490117--43490195	9	8.6	8	76	19	50	51	3	0	44	1.19
43500286--43500322	20	1.9	19	89	10	58	59	0	0	40	0.97
43504258--43504325	30	2.4	28	82	9	84	55	0	2	41	1.15
43506325--43506909	114	5.1	114	73	9	523	33	16	20	29	1.95
43506330--43506909	227	2.5	229	89	4	879	32	16	20	29	1.95
43506709--43507107	188	2.1	188	90	0	618	32	15	21	30	1.94
43506846--43507002	74	2.1	75	82	4	192	35	17	19	28	1.94
43507525--43507575	7	7.6	7	86	8	79	15	0	50	33	1.44
43507518--43507575	21	2.8	20	90	10	91	17	0	48	34	1.47
43507530--43507597	33	2.1	33	83	5	84	19	0	47	33	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43507674--43507770	7	13.9	7	87	0	131	19	1	50	28	1.54
43507995--43508021	14	1.9	14	100	0	54	48	0	7	44	1.31
43508049--43508096	18	2.7	17	80	6	60	77	2	6	14	1.06
43508582--43508973	198	2.0	198	89	1	606	29	16	20	34	1.94
43509473--43509497	10	2.5	10	100	0	50	48	12	8	32	1.69
43510250--43510293	18	2.4	19	84	3	54	13	15	13	56	1.67
43510297--43510383	7	12.3	7	85	2	120	3	13	12	70	1.30
43510295--43510380	28	3.0	28	89	1	136	4	13	11	69	1.33
43510786--43511902	100	11.1	100	95	1	1995	40	7	4	48	1.49
43510892--43511862	52	19.1	58	64	31	330	39	7	4	48	1.50
43510788--43511902	304	3.7	303	97	1	2051	39	7	4	48	1.49
43511724--43511877	48	3.1	48	68	23	138	40	7	4	47	1.53
43511971--43512009	13	3.0	13	92	0	60	46	7	2	43	1.46
43511977--43512112	53	2.6	53	84	0	191	37	10	5	46	1.62
43512257--43512507	9	28.8	9	70	12	157	45	20	3	31	1.67
43512288--43512480	25	7.4	25	71	13	131	46	18	3	31	1.67
43512414--43512518	25	4.2	25	76	11	106	45	19	2	32	1.65
43524387--43524420	17	2.0	17	94	0	59	29	14	17	38	1.90
43527459--43527552	45	2.0	47	85	4	129	50	3	5	41	1.41
43535052--43535091	6	6.7	6	100	0	80	70	15	0	15	1.18
43535048--43535119	18	4.3	17	73	16	60	75	11	4	9	1.18
43535082--43535129	20	2.4	20	86	6	62	75	8	10	6	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43536815--43537170	87	4.1	87	90	0	543	30	21	24	24	1.99
43537154--43537304	44	3.4	45	77	4	164	31	21	27	19	1.98
43538717--43538898	40	4.6	40	78	10	185	26	28	20	23	1.99
43538717--43538898	79	2.3	80	79	10	194	26	28	20	23	1.99
43540139--43540258	56	2.1	56	96	0	222	21	23	10	45	1.82
43546063--43546246	40	4.6	40	77	10	171	27	27	21	23	1.99
43546063--43546194	40	3.3	39	86	5	176	27	28	20	23	1.99
43547486--43547605	56	2.1	56	98	0	231	22	23	9	45	1.81
43554744--43554768	5	5.0	5	100	0	50	0	40	0	60	0.97
43558752--43558813	20	3.0	21	74	11	56	56	4	1	37	1.30
43563656--43563755	32	3.3	32	68	18	104	56	6	4	34	1.43
43563639--43563764	59	2.1	59	100	0	252	52	4	3	39	1.38
43565154--43565193	10	3.9	10	93	6	71	30	0	2	67	1.04
43565154--43565193	21	2.0	20	95	5	71	30	0	2	67	1.04
43565171--43565241	7	8.6	8	84	12	67	36	0	0	63	0.95
43565182--43565263	41	2.0	41	83	9	105	39	0	1	59	1.05
43565182--43565264	8	10.0	8	80	12	62	39	0	1	59	1.05
43565708--43565746	3	13.0	3	94	0	69	69	0	30	0	0.89
43565745--43565782	3	12.7	3	100	0	76	34	0	65	0	0.93
43571048--43571082	6	5.5	6	87	12	52	65	0	20	14	1.26
43571000--43571126	63	2.0	64	86	4	177	50	5	18	25	1.68
43574949--43574987	17	2.4	16	84	16	53	56	0	12	30	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43583215--43583485	82	3.3	82	88	1	384	45	12	14	27	1.82
43586886--43586941	10	5.8	9	80	15	67	71	3	0	25	1.02
43587004--43587054	19	2.7	20	71	20	54	33	0	5	60	1.21
43588495--43588530	18	1.9	19	88	5	56	61	2	0	36	1.11
43593649--43593677	12	2.3	13	94	5	51	6	27	0	65	1.18
43593907--43594179	50	5.4	50	81	4	163	23	27	20	28	1.99
43593958--43594184	100	2.2	103	84	4	280	21	28	22	27	1.99
43593958--43594184	50	4.4	52	82	7	250	21	28	22	27	1.99
43600448--43600477	14	2.1	14	93	0	51	20	40	13	26	1.89
43600468--43601307	128	6.6	128	92	0	1335	24	19	22	32	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221