genome.fa.s26.2.7.7.80.10.50.1000.171.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Length:  64892201

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   

This is table  171  of  221  ( 26413 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51240504--51240669	19	8.7	19	91	0	278	37	15	8	37	1.78
51240479--51240669	38	4.9	38	95	2	319	38	15	7	38	1.77
51241705--51241805	44	2.3	44	83	6	125	27	28	11	31	1.92
51243714--51243819	41	2.6	41	93	0	176	20	21	25	32	1.98
51251602--51251703	41	2.5	41	86	0	141	24	21	21	32	1.98
51252928--51253071	44	3.3	44	66	7	130	20	22	32	24	1.98
51252880--51253252	88	4.2	88	94	0	638	18	24	30	26	1.98
51252818--51253252	176	2.5	176	90	0	656	19	23	29	27	1.98
51252928--51253159	44	5.3	44	61	13	109	18	23	31	26	1.98
51253236--51253791	44	12.5	44	75	7	408	28	25	17	28	1.97
51253237--51253791	133	4.2	133	91	0	896	28	25	17	28	1.97
51253237--51253791	89	6.3	89	76	4	503	28	25	17	28	1.97
51260002--51260118	58	2.0	58	94	0	207	14	23	5	56	1.58
51260246--51260337	19	4.8	19	94	0	166	38	16	8	36	1.79
51260223--51260337	38	2.9	38	93	5	185	39	16	7	36	1.78
51261601--51261627	13	2.1	13	100	0	54	44	14	0	40	1.46
51266887--51266921	17	2.2	15	90	10	52	28	0	14	57	1.38
51281906--51282017	12	9.0	11	74	18	73	25	18	10	44	1.82
51281909--51281999	13	7.0	13	80	12	107	23	19	10	46	1.82
51281933--51281999	27	2.5	27	100	0	134	22	19	10	47	1.79
51286234--51286259	7	3.7	7	100	0	52	11	0	11	76	1.01
51286484--51286529	19	2.4	19	85	7	58	71	0	4	23	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51297027--51297061	7	5.0	7	92	0	61	40	0	31	28	1.57
51298379--51298422	21	2.0	21	86	4	61	25	0	0	75	0.81
51298851--51298898	24	1.9	24	83	8	60	31	2	4	62	1.26
51301488--51301530	18	2.4	18	80	0	50	27	6	32	32	1.84
51307862--51307892	14	2.1	15	94	5	55	32	0	6	61	1.21
51311810--51311850	9	4.7	9	77	17	50	12	14	0	73	1.11
51312177--51312216	17	2.3	17	86	4	53	22	5	5	67	1.30
51312920--51312985	10	6.1	11	71	25	52	28	31	0	39	1.57
51312928--51312985	22	2.6	22	88	2	89	32	29	0	37	1.58
51314827--51314861	18	1.9	18	94	0	61	25	31	8	34	1.86
51315286--51315370	43	1.9	45	88	4	129	40	0	11	48	1.40
51315338--51315405	25	2.7	25	100	0	136	44	0	14	41	1.45
51315421--51316135	29	23.2	29	65	27	204	45	24	0	29	1.56
51315471--51315931	71	6.4	74	82	11	320	45	23	0	30	1.55
51315596--51315638	20	2.2	20	91	4	70	48	23	0	27	1.51
51315653--51315761	19	6.1	17	66	16	60	44	25	0	29	1.54
51315557--51315706	49	3.3	44	87	8	169	46	24	0	29	1.53
51315457--51316018	191	2.9	191	87	8	725	45	24	0	30	1.56
51315710--51316216	42	11.0	42	71	22	335	44	25	0	29	1.58
51315913--51315950	19	2.1	17	90	9	58	44	28	0	26	1.54
51316010--51316061	19	2.8	19	94	5	90	44	32	0	23	1.54
51315401--51316248	23	35.7	23	68	24	427	45	24	0	29	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51316112--51316213	18	5.4	18	75	14	89	45	24	0	29	1.60
51316146--51316232	24	3.8	23	72	20	76	44	25	0	29	1.54
51315582--51316164	214	2.7	213	83	10	619	44	24	0	30	1.58
51316254--51316471	116	1.9	116	95	0	391	38	9	9	42	1.70
51318338--51318687	126	2.8	123	87	5	508	32	22	14	29	1.94
51320300--51320361	19	3.2	19	76	13	54	54	3	1	40	1.26
51321652--51321676	12	2.1	12	100	0	50	72	0	8	20	1.10
51322052--51322267	44	4.9	44	66	9	118	27	22	17	31	1.97
51322027--51322329	132	2.3	132	95	0	552	28	22	19	30	1.98
51322423--51322834	128	3.3	124	86	6	397	29	20	18	31	1.97
51322506--51322834	44	7.7	44	70	11	200	29	20	18	31	1.96
51322475--51322834	85	4.2	85	69	14	220	29	20	18	30	1.97
51322549--51322752	43	4.8	42	75	9	173	28	21	19	29	1.98
51322475--51322854	128	3.0	128	91	1	584	29	20	19	30	1.97
51325112--51325194	42	1.9	42	82	7	103	9	16	3	69	1.29
51325156--51325256	12	8.4	12	72	12	64	12	7	6	72	1.28
51325194--51325256	6	10.7	6	83	10	58	14	6	7	71	1.29
51329420--51329444	12	2.1	12	100	0	50	72	0	8	20	1.10
51329697--51329748	22	2.4	22	78	9	54	51	3	7	36	1.49
51333815--51333907	39	2.3	40	83	7	118	52	5	3	38	1.40
51347259--51347311	23	2.5	20	82	17	54	39	3	3	52	1.37
51347282--51347345	3	21.3	3	78	0	65	37	1	3	57	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51347469--51347503	18	1.9	18	88	0	52	34	0	0	65	0.93
51353037--51353112	25	3.0	26	69	9	77	25	14	3	56	1.55
51353754--51353819	28	2.2	29	79	15	73	50	3	1	45	1.26
51356324--51356366	18	2.4	18	84	0	59	16	51	6	25	1.69
51359592--51359640	20	2.5	19	77	6	53	44	2	2	51	1.24
51359565--51359640	39	1.9	39	82	10	93	44	1	2	51	1.23
51362338--51362367	15	2.0	15	93	0	51	43	3	20	33	1.68
51364783--51364807	3	8.3	3	100	0	50	36	0	32	32	1.58
51375103--51375151	25	2.0	25	92	8	82	32	14	26	26	1.94
51387530--51387929	67	6.0	67	80	5	407	35	16	23	24	1.95
51387530--51387912	200	1.9	200	80	5	452	35	16	24	24	1.95
51387920--51387992	27	2.7	27	80	0	83	27	12	30	30	1.93
51390442--51390467	13	2.0	13	100	0	52	53	0	0	46	1.00
51391131--51391170	15	2.5	17	80	19	50	52	2	30	15	1.55
51395329--51395381	22	2.3	24	81	18	60	71	3	5	18	1.21
51395770--51395799	3	10.0	3	100	0	60	33	0	0	66	0.92
51397558--51397591	15	2.3	15	89	0	50	14	2	0	82	0.79
51399484--51399544	15	4.1	15	78	0	59	29	11	3	55	1.51
51407772--51407860	44	2.0	43	89	2	133	50	3	8	37	1.51
51417592--51417739	43	3.5	42	83	5	163	30	31	16	22	1.95
51417593--51417782	86	2.2	86	80	2	211	31	29	15	23	1.96
51418090--51418182	21	4.4	21	83	0	114	5	44	17	33	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51418090--51418202	21	5.4	21	82	0	91	5	41	17	35	1.72
51418173--51418319	66	2.2	66	84	4	181	12	27	18	42	1.86
51418193--51418343	66	2.3	65	85	5	205	13	24	19	41	1.88
51423784--51423840	25	2.3	25	84	0	69	36	5	14	43	1.67
51423842--51423925	9	9.8	9	65	10	50	39	2	16	41	1.62
51423946--51423984	9	4.6	9	87	12	64	33	0	23	43	1.54
51423947--51423979	16	2.1	16	100	0	66	30	0	24	45	1.53
51423864--51424022	85	1.9	85	82	2	203	42	1	13	42	1.55
51424005--51424050	22	2.1	22	87	0	65	45	0	10	43	1.39
51423971--51424093	56	2.2	56	98	0	237	43	3	9	43	1.53
51424142--51424193	22	2.4	21	83	6	68	42	0	13	44	1.44
51424026--51424240	81	2.6	81	86	10	285	40	2	12	44	1.56
51423969--51424233	56	4.7	54	76	12	166	40	3	11	44	1.55
51425900--51425944	21	2.2	20	88	11	65	13	6	0	80	0.91
51426253--51426291	17	2.2	18	90	4	62	35	20	7	35	1.81
51426326--51426667	91	3.8	89	92	3	555	46	25	1	26	1.62
51426326--51426667	180	1.9	178	91	5	566	46	25	1	26	1.62
51426649--51426687	21	1.9	21	89	5	62	38	41	0	20	1.53
51426806--51426831	7	3.7	7	100	0	52	30	53	0	15	1.42
51427263--51427288	9	2.9	9	100	0	52	57	42	0	0	0.98
51427278--51427784	113	4.5	113	94	0	870	30	23	22	22	1.99
51427770--51427904	40	3.4	39	74	9	123	24	18	19	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51427998--51428039	18	2.3	19	84	12	52	26	0	11	61	1.30
51437062--51437106	9	5.0	9	97	0	81	42	11	13	33	1.79
51437147--51437185	9	4.3	9	93	0	69	46	12	10	30	1.75
51437190--51437244	29	1.9	29	92	3	94	38	7	0	54	1.28
51442239--51442263	5	5.0	5	100	0	50	20	20	20	40	1.92
51443955--51444024	35	2.0	35	100	0	140	51	5	17	25	1.67
51447932--51447986	28	2.0	28	82	7	67	41	23	21	12	1.88
51467083--51467504	210	2.0	209	97	0	799	25	21	12	39	1.89
51470598--51470710	43	2.7	43	84	4	140	25	17	24	31	1.97
51474085--51474214	64	2.0	64	83	0	161	20	20	23	36	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221