genome.fa.s26.2.7.7.80.10.50.1000.120.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Length:  64892201

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   

This is table  120  of  221  ( 26413 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36866877--36866904	10	2.8	10	100	0	56	82	0	0	17	0.68
36867674--36867746	30	2.4	30	95	0	128	15	45	27	12	1.81
36867705--36867752	19	2.6	18	80	6	51	14	45	27	12	1.81
36877749--36877792	3	14.7	3	100	0	88	34	0	0	65	0.93
36879335--36879421	9	9.6	9	86	7	113	19	11	28	40	1.86
36895078--36895180	46	2.3	46	83	5	120	10	33	31	24	1.89
36895170--36895238	29	2.4	29	100	0	138	17	40	30	11	1.85
36898850--36898880	6	5.2	6	100	0	62	83	0	0	16	0.64
36899168--36899208	7	5.7	7	91	2	64	19	0	39	41	1.52
36899161--36899207	21	2.2	21	85	7	60	21	2	34	42	1.65
36899168--36899208	21	1.9	22	95	5	75	19	0	39	41	1.52
36899741--36899936	99	2.0	99	93	0	338	23	23	11	40	1.88
36903936--36903964	11	2.6	11	100	0	58	89	0	10	0	0.48
36905082--36905123	14	3.2	13	78	15	50	54	2	0	42	1.13
36905083--36905140	28	2.1	27	84	15	75	53	1	0	44	1.10
36905099--36905140	14	3.0	14	86	6	59	54	0	0	45	0.99
36911098--36911265	47	3.6	47	87	0	228	27	29	8	34	1.87
36915550--36915688	40	3.5	40	91	0	215	26	28	20	24	1.99
36917666--36917832	47	3.6	47	84	1	219	28	29	8	33	1.86
36930403--36930472	35	2.0	36	82	2	88	28	11	21	38	1.88
36933656--36933687	14	2.3	14	100	0	64	50	0	31	18	1.48
36939650--36939681	16	2.0	16	100	0	64	31	25	6	37	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36943459--36943520	21	2.9	21	73	4	52	61	3	4	30	1.33
36946055--36946095	19	2.1	20	90	4	66	14	36	29	19	1.92
36950473--36950735	40	6.6	40	87	3	316	24	20	28	26	1.99
36952250--36952457	42	4.9	42	86	2	204	33	18	22	26	1.97
36952246--36952415	85	2.0	85	81	4	200	34	19	21	24	1.97
36952344--36952500	42	3.8	40	82	7	161	29	18	22	29	1.97
36952948--36953003	21	2.7	21	86	5	69	5	39	16	39	1.71
36958434--36959156	9	83.8	9	70	15	333	30	2	18	48	1.62
36958494--36958566	16	5.0	16	75	21	79	28	5	17	47	1.70
36958434--36959159	25	28.8	25	73	12	310	30	2	18	48	1.62
36958499--36958591	41	2.3	41	98	0	177	32	4	18	45	1.69
36958659--36958731	37	2.0	37	97	0	137	31	2	15	50	1.58
36958843--36959156	16	18.8	17	69	18	112	30	2	17	49	1.59
36958975--36959049	12	6.3	12	81	9	91	34	1	13	50	1.50
36961277--36961506	74	3.1	73	70	13	209	41	20	13	23	1.89
36961190--36961601	147	2.8	147	92	0	689	40	20	15	23	1.90
36961204--36961579	73	5.1	73	67	14	261	40	20	14	23	1.90
36961228--36961602	75	5.1	74	68	15	256	40	20	15	23	1.90
36961187--36961559	72	5.1	72	67	15	271	39	20	15	23	1.91
36961631--36961862	115	2.0	115	89	0	356	33	21	18	27	1.96
36962554--36962798	50	4.8	50	79	8	228	22	28	21	27	1.99
36969998--36970293	50	5.8	51	82	4	282	21	27	22	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36971909--36971966	23	2.4	24	81	18	68	41	25	12	20	1.87
36972229--36972266	7	5.3	7	96	3	67	44	0	13	42	1.43
36972229--36972272	21	2.0	22	86	4	63	47	2	11	38	1.52
36973635--36973665	14	2.2	14	100	0	62	6	12	0	80	0.89
36976914--36976947	6	5.7	6	92	0	59	14	2	0	82	0.79
36976913--36976952	12	3.3	12	89	0	62	12	7	0	80	0.91
36988001--36988323	44	7.4	44	78	7	318	30	20	23	26	1.98
36987991--36988347	88	4.1	88	78	7	388	30	20	21	26	1.98
36987994--36988347	132	2.7	128	87	3	487	30	20	22	26	1.98
36988000--36988392	129	3.0	129	81	6	456	30	19	21	28	1.97
36988550--36988688	44	3.1	44	88	5	199	30	17	22	28	1.97
36988575--36988711	44	3.1	42	78	12	134	28	17	21	32	1.96
36989251--36989294	15	3.2	15	69	24	51	43	36	2	18	1.63
36999043--36999067	13	1.9	13	100	0	50	32	20	16	32	1.94
36999613--36999790	27	6.6	26	82	6	169	26	15	28	28	1.96
36999614--36999769	82	1.9	81	86	3	224	26	16	28	28	1.97
37005439--37005472	17	2.1	17	94	5	61	29	38	11	20	1.88
37006368--37006560	40	4.9	40	83	3	232	40	27	18	12	1.88
37006372--37006560	79	2.4	79	90	0	297	40	27	18	13	1.88
37006539--37006580	21	2.0	21	95	0	75	40	19	26	14	1.89
37039846--37040012	83	2.0	83	98	0	325	25	11	17	45	1.82
37044340--37044399	20	3.0	20	83	9	70	41	1	3	53	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37044347--37044410	19	3.4	18	80	8	58	39	1	3	56	1.25
37045171--37045202	3	10.7	3	100	0	64	31	0	0	68	0.90
37045945--37045980	10	3.5	10	85	7	54	75	0	5	19	1.00
37046583--37046851	147	1.8	147	85	1	378	44	10	4	40	1.59
37047671--37048158	42	11.6	42	87	0	618	38	25	16	19	1.92
37047671--37048158	126	3.9	126	89	1	710	38	25	16	19	1.92
37048569--37048611	12	3.4	12	81	9	50	0	4	16	79	0.90
37056695--37056737	19	2.4	17	78	21	52	46	18	0	34	1.50
37059055--37059096	21	2.0	21	90	0	66	45	2	16	35	1.61
37062318--37062660	146	2.4	146	84	6	439	41	10	4	43	1.59
37081345--37081399	2	27.5	2	100	0	110	0	50	0	49	1.00
37087641--37087695	21	2.7	20	80	8	65	32	14	0	52	1.42
37087613--37087713	14	7.1	14	70	17	57	33	19	0	45	1.57
37087641--37087707	7	9.6	7	74	18	59	32	14	1	50	1.52
37087659--37087714	21	2.7	20	83	5	67	30	17	1	50	1.57
37091093--37091279	41	4.6	41	88	0	257	29	22	21	25	1.99
37102758--37102830	36	2.0	36	100	0	146	30	19	16	34	1.94
37104256--37104302	17	2.5	19	76	13	53	29	4	6	59	1.41
37113620--37113872	27	9.4	27	80	0	265	42	20	16	20	1.89
37113616--37113879	81	3.3	80	80	3	307	43	19	16	20	1.87
37115248--37115608	27	13.4	27	82	3	386	42	20	17	19	1.89
37117078--37117200	27	4.6	27	89	0	183	43	20	17	18	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37117078--37117291	54	3.7	54	75	16	185	42	20	17	18	1.89
37117133--37117268	68	2.0	68	92	0	227	43	20	18	17	1.88
37117205--37117293	27	3.3	27	84	6	117	41	21	17	19	1.90
37117118--37117291	95	1.8	95	87	0	258	42	21	17	17	1.89
37120539--37120607	9	7.0	9	78	18	57	40	0	1	57	1.07
37120552--37120658	33	3.4	32	80	5	110	46	0	3	48	1.26
37129794--37130016	39	5.7	40	85	8	266	25	22	27	24	2.00
37129794--37130016	79	2.8	81	84	9	282	25	22	27	24	2.00
37129794--37130049	79	3.3	79	81	11	237	26	21	27	24	1.99
37132956--37133133	27	6.6	27	84	3	205	29	28	15	26	1.96
37132977--37133132	82	1.9	81	88	3	233	29	28	15	26	1.96
37141234--37141456	39	5.7	40	84	8	257	25	21	27	25	2.00
37141234--37141456	79	2.8	80	82	12	273	25	21	27	25	2.00
37141286--37141489	79	2.6	79	80	9	206	25	20	27	25	1.99
37147182--37147289	45	2.4	45	83	7	123	36	28	15	19	1.93
37147222--37147385	90	1.8	90	83	0	220	35	23	15	25	1.94
37147222--37147390	45	3.8	45	77	4	153	35	23	14	26	1.94
37154719--37154753	18	1.9	18	88	0	52	51	5	34	8	1.56
37158549--37158614	32	2.0	33	88	2	98	40	4	21	33	1.73
37160063--37160202	75	1.9	74	83	7	185	35	23	18	22	1.95
37160425--37160474	24	2.1	24	92	0	82	40	12	16	32	1.84
37161200--37161266	9	7.4	9	93	0	89	23	5	23	46	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37161596--37161663	33	2.0	36	88	8	106	27	25	20	26	1.99
37162057--37162167	26	4.3	26	88	2	161	24	16	22	36	1.94
37162057--37162171	52	2.2	52	92	3	187	23	15	23	37	1.93
37169312--37169371	27	2.2	28	82	11	72	40	21	20	18	1.92
37169517--37169667	26	5.7	26	84	4	160	22	17	21	38	1.93
37169512--37169666	52	2.9	52	85	3	186	23	18	20	38	1.94
37172770--37172812	16	2.8	16	92	3	70	41	0	16	41	1.48
37172811--37172845	18	2.0	17	88	5	52	45	0	0	54	0.99
37172786--37172979	57	3.3	57	67	23	136	43	0	6	49	1.31
37173107--37173203	44	2.2	44	87	9	135	34	28	5	31	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221