genome.fa.s26.2.7.7.80.10.50.1000.178.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Length:  64892201

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   

This is table  178  of  221  ( 26413 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53100850--53100906	25	2.2	25	96	3	105	29	21	3	45	1.68
53105485--53105518	7	4.9	7	100	0	68	58	0	14	26	1.36
53107248--53107378	64	2.0	64	95	0	235	44	5	8	41	1.57
53113428--53113490	25	2.5	25	86	0	81	31	20	23	23	1.98
53113432--53113514	25	3.3	24	81	9	78	31	22	21	24	1.98
53113668--53113729	31	2.0	32	81	9	74	43	6	14	35	1.71
53115909--53115953	7	6.4	7	80	10	56	55	13	4	26	1.57
53117615--53117674	26	2.1	29	79	14	72	65	0	1	33	1.03
53117666--53117710	19	2.4	19	85	7	56	57	6	6	28	1.50
53117698--53117739	18	2.4	18	80	15	52	66	0	4	28	1.12
53117642--53117769	56	2.3	55	80	13	143	60	3	5	30	1.38
53117677--53117759	28	3.0	28	72	12	80	59	3	6	31	1.39
53117734--53117808	21	3.7	21	71	16	68	57	4	6	32	1.43
53117973--53118010	19	2.0	20	89	5	60	42	2	0	55	1.14
53118057--53118246	90	2.1	88	83	7	233	33	10	22	34	1.87
53120324--53120450	55	2.3	55	75	1	128	23	13	21	41	1.88
53129496--53129533	18	2.2	18	86	9	53	68	2	5	23	1.23
53135361--53135483	63	1.9	61	82	14	151	37	4	6	52	1.47
53139518--53139553	12	2.8	13	83	8	56	16	8	0	75	1.04
53149421--53149612	103	1.9	101	85	2	267	31	14	25	29	1.94
53172644--53172681	18	2.2	18	86	9	53	68	2	5	23	1.23
53178551--53178680	68	1.9	69	89	7	203	40	4	6	49	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53183845--53183871	10	2.7	10	100	0	54	40	7	22	29	1.81
53186926--53187206	137	2.1	137	98	0	546	32	13	19	34	1.90
53214070--53214107	18	2.2	18	86	9	53	68	2	5	23	1.23
53217097--53217141	18	2.4	18	85	7	54	42	2	0	55	1.12
53225076--53225102	10	2.7	10	100	0	54	40	7	22	29	1.81
53228152--53228432	137	2.1	137	98	0	546	32	13	19	34	1.90
53234560--53234751	103	1.9	101	85	2	267	31	14	25	29	1.94
53245895--53245977	40	2.1	40	83	0	103	20	21	26	31	1.98
53252905--53252964	26	2.3	26	91	0	102	30	23	26	20	1.98
53255186--53255238	21	2.5	21	93	3	88	24	5	13	56	1.58
53259680--53259833	70	2.2	70	98	0	299	30	8	26	34	1.86
53265211--53265235	7	3.6	7	100	0	50	76	0	12	12	1.04
53266711--53266756	20	2.2	20	84	3	56	8	28	13	50	1.70
53268985--53269027	3	14.3	3	95	0	77	65	0	2	32	1.06
53275374--53275426	26	2.0	26	100	0	106	33	15	15	35	1.88
53277406--53277438	3	11.0	3	100	0	66	0	33	33	33	1.58
53281166--53281191	10	2.6	10	100	0	52	61	0	38	0	0.96
53289534--53289573	3	13.3	3	100	0	80	67	0	0	32	0.91
53289538--53289602	9	6.9	9	80	16	51	60	4	4	30	1.37
53290577--53290623	9	5.4	9	76	19	55	70	8	12	8	1.34
53290572--53290625	25	2.2	26	83	10	76	74	7	11	7	1.23
53290579--53290630	25	2.1	25	92	0	86	71	7	11	9	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53290608--53290647	15	2.6	16	84	4	55	75	5	15	5	1.15
53291452--53292208	44	16.9	45	67	15	183	29	21	17	31	1.96
53291313--53291670	137	2.6	137	87	1	495	30	19	17	32	1.95
53291510--53291808	92	3.3	92	73	11	308	32	18	17	31	1.94
53291826--53292206	44	8.6	44	72	7	234	29	22	18	29	1.98
53291506--53291895	181	2.2	181	89	1	595	31	20	17	30	1.96
53291643--53292159	223	2.3	225	84	2	648	30	21	17	30	1.96
53293078--53293121	21	2.1	21	86	0	61	6	11	0	81	0.86
53296492--53296537	3	15.3	3	100	0	92	67	0	0	32	0.91
53303602--53303665	3	21.3	3	96	0	119	68	0	31	0	0.90
53309030--53309094	16	4.1	16	87	0	94	41	4	33	20	1.72
53309071--53309161	45	2.0	44	91	6	148	31	6	28	32	1.83
53309071--53309180	45	2.6	42	86	11	138	33	6	29	30	1.82
53309306--53309347	15	2.7	16	82	14	52	52	2	0	45	1.13
53309315--53309356	15	2.9	14	86	10	50	54	0	0	45	0.99
53309366--53309563	66	3.2	65	67	19	195	47	7	2	42	1.44
53309422--53309467	16	2.9	16	78	12	51	52	2	0	45	1.13
53309472--53309501	16	1.9	15	93	6	51	43	10	0	46	1.37
53309541--53309613	16	4.6	16	73	19	55	53	1	0	45	1.09
53309566--53309613	18	2.8	18	74	22	50	56	0	0	43	0.99
53309304--53309630	120	2.7	120	95	0	593	49	5	1	43	1.34
53316265--53316330	25	2.6	25	100	0	132	39	19	7	33	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53334198--53335202	89	11.3	89	94	0	1654	29	19	24	25	1.99
53335177--53336009	89	9.4	89	91	1	1073	31	17	24	27	1.97
53334207--53336081	178	10.5	178	87	4	1506	30	18	24	26	1.98
53334207--53335855	267	6.2	266	85	4	1497	30	19	24	26	1.98
53341278--53341336	27	2.2	27	81	6	66	55	5	0	38	1.22
53341590--53341622	17	1.9	17	93	0	57	33	21	6	39	1.78
53364792--53364820	15	1.9	15	100	0	58	34	27	13	24	1.93
53370031--53370071	19	2.2	19	86	8	57	46	4	0	48	1.23
53370358--53370433	28	2.8	27	84	4	98	36	3	0	59	1.16
53370938--53370999	27	2.3	27	82	0	88	17	30	32	19	1.95
53371292--53371335	16	2.8	16	83	10	54	25	0	13	61	1.32
53376846--53376871	11	2.4	11	100	0	52	38	15	7	38	1.76
53379106--53380056	285	3.3	284	93	1	1618	31	11	6	50	1.65
53380492--53380581	14	6.3	14	77	12	85	0	26	2	71	0.98
53380462--53380578	44	2.6	44	86	6	157	1	27	1	69	1.08
53380428--53380578	44	3.5	44	79	10	145	1	28	1	68	1.05
53381817--53381865	13	3.7	13	81	13	55	75	4	2	18	1.06
53384718--53384757	21	1.9	21	84	0	53	37	7	10	45	1.66
53384860--53384899	19	2.0	20	85	4	55	32	12	0	55	1.38
53401063--53401100	14	2.8	14	84	4	51	42	13	0	44	1.43
53402766--53402815	3	17.3	3	79	8	59	66	4	0	30	1.10
53402766--53402812	18	2.7	18	87	6	71	65	4	0	29	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53405038--53405120	42	2.0	42	92	0	139	40	4	22	31	1.75
53406652--53406736	30	2.8	30	75	7	91	37	21	14	27	1.91
53413113--53413199	36	2.4	36	82	0	102	47	13	17	21	1.82
53413132--53413213	36	2.3	36	78	2	94	47	15	15	20	1.82
53416770--53416929	80	2.0	80	97	0	302	31	10	19	38	1.86
53420372--53420758	50	7.7	50	80	3	427	30	24	15	30	1.95
53424118--53424263	49	3.0	48	90	5	222	33	27	11	27	1.91
53426328--53426710	50	7.6	50	82	4	421	30	24	15	30	1.96
53432641--53432673	3	11.0	3	87	12	50	66	0	3	30	1.06
53437356--53437475	42	2.9	40	77	13	127	18	21	26	33	1.96
53440915--53440957	15	2.9	15	80	13	52	6	18	11	62	1.50
53441578--53441609	15	2.1	16	94	5	57	53	3	0	43	1.16
53441594--53441720	22	5.1	26	75	15	110	41	3	2	52	1.30
53441594--53441720	50	2.6	50	83	13	156	41	3	2	52	1.30
53441619--53441748	54	2.4	55	78	14	139	40	2	1	55	1.22
53441715--53441810	11	8.5	11	65	13	52	37	5	2	55	1.34
53441815--53441906	28	3.6	28	75	22	119	46	4	3	45	1.39
53441805--53441926	48	2.5	48	95	0	217	45	3	3	48	1.35
53441832--53441932	20	4.7	20	74	17	85	43	3	1	50	1.32
53441915--53441950	12	2.9	12	91	4	54	38	0	0	61	0.96
53441892--53441940	20	2.6	19	87	6	55	42	0	0	57	0.99
53441972--53442590	25	25.5	24	70	18	139	44	16	1	36	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53441971--53442577	41	14.4	41	76	11	523	45	16	1	36	1.57
53441975--53442563	66	9.2	66	76	12	631	44	16	1	37	1.57
53441971--53442585	132	4.8	130	93	5	1010	45	16	1	36	1.57
53442298--53442361	28	2.2	28	83	2	83	51	14	0	34	1.42
53442396--53442486	34	2.7	34	83	3	96	45	16	1	37	1.55
53448003--53448151	66	2.3	66	88	4	212	39	16	26	17	1.91
53448503--53448776	43	6.4	43	76	7	198	25	18	25	29	1.98
53452461--53452498	19	2.0	20	84	5	51	50	5	2	42	1.39
53457550--53457588	20	2.0	20	94	0	69	30	28	17	23	1.97
53459006--53459258	46	5.6	46	91	1	406	29	22	15	32	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221