genome.fa.s26.2.7.7.80.10.50.1000.103.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Length:  64892201

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   

This is table  103  of  221  ( 26413 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31724049--31724416	184	2.0	184	88	5	548	29	19	14	36	1.91
31729705--31729780	35	2.2	35	85	2	100	28	17	27	26	1.97
31733203--31733273	28	2.5	28	88	0	97	26	29	12	30	1.93
31735153--31735297	43	3.4	43	76	0	155	24	18	24	32	1.97
31736015--31736112	41	2.4	41	94	0	169	27	11	14	46	1.78
31743007--31743041	15	2.4	14	90	4	52	17	2	5	74	1.14
31757285--31757323	20	2.0	20	84	0	51	43	2	2	51	1.29
31761102--31761157	27	2.1	26	83	9	69	16	19	1	62	1.41
31766536--31766576	21	2.0	21	95	0	73	29	29	17	24	1.97
31767152--31767192	21	2.0	20	85	4	55	65	2	0	31	1.05
31769182--31769232	23	2.2	24	92	3	86	19	15	7	56	1.63
31776827--31776878	7	7.4	7	79	16	63	44	0	13	42	1.44
31777109--31777162	20	2.7	20	88	0	81	31	7	18	42	1.78
31791098--31791151	28	1.9	28	88	0	81	29	20	20	29	1.98
31791412--31791466	20	2.8	20	88	0	83	25	29	16	29	1.97
31793464--31793502	15	2.6	14	88	4	51	74	2	7	15	1.15
31793554--31793578	13	1.9	13	100	0	50	84	0	16	0	0.63
31793559--31793625	26	2.4	27	85	9	91	74	2	11	10	1.17
31794475--31794513	15	2.4	15	87	12	51	66	2	20	10	1.33
31795959--31796013	20	2.8	20	88	0	83	25	29	16	29	1.97
31798002--31798058	12	4.7	12	78	16	55	75	7	5	12	1.17
31798101--31798168	27	2.4	27	82	7	73	70	2	14	11	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31798113--31798168	27	2.0	29	86	6	80	67	3	14	14	1.35
31799015--31799053	15	2.4	15	87	12	51	66	2	20	10	1.33
31800533--31800587	20	2.8	20	88	0	83	25	29	16	29	1.97
31802581--31802634	12	4.6	12	80	8	58	75	5	3	14	1.12
31802680--31802743	26	2.4	27	89	5	94	73	3	12	10	1.21
31802679--31802743	27	2.3	29	87	10	91	73	3	12	10	1.20
31803593--31803631	15	2.4	15	87	12	51	66	2	20	10	1.33
31805113--31805167	20	2.8	20	88	0	83	25	29	16	29	1.97
31807921--31808044	40	3.1	40	82	5	171	33	21	18	25	1.96
31807922--31808069	40	3.7	40	80	10	162	31	20	20	27	1.98
31808138--31808240	40	2.6	39	83	4	116	31	18	21	29	1.97
31808248--31808294	7	6.9	7	82	4	51	23	0	27	48	1.51
31808278--31808335	21	2.8	21	83	0	71	17	0	46	36	1.48
31808292--31808335	7	6.3	7	91	0	70	13	0	52	34	1.41
31812168--31812466	23	13.1	23	76	8	265	32	5	23	39	1.76
31812172--31812435	68	3.9	69	77	12	213	32	4	23	39	1.76
31812173--31812468	114	2.6	115	85	6	356	32	5	22	39	1.76
31812168--31812458	91	3.2	92	76	11	294	32	4	23	39	1.75
31813328--31813551	43	5.2	43	85	2	297	24	17	28	29	1.97
31813328--31813551	86	2.6	86	87	0	331	24	17	28	29	1.97
31813675--31813717	20	2.2	20	95	0	77	13	23	20	41	1.88
31814061--31814211	75	2.0	75	94	0	266	45	7	14	31	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31814187--31814470	138	2.1	138	93	0	487	39	8	5	45	1.59
31816705--31816878	50	3.4	50	78	6	152	21	28	21	27	1.99
31833432--31833465	17	2.1	17	88	5	52	41	32	5	20	1.76
31835072--31835334	40	6.6	40	87	3	316	25	20	27	26	1.99
31835111--31835369	80	3.3	80	84	3	238	26	20	27	25	1.99
31843021--31843283	40	6.6	40	88	3	325	24	20	27	26	1.99
31843060--31843318	80	3.3	80	85	3	256	25	20	27	25	1.99
31850617--31850792	27	6.5	26	82	5	147	26	15	27	29	1.96
31850616--31850771	82	1.9	81	84	8	210	26	16	28	28	1.97
31850612--31850792	82	2.2	81	80	6	206	27	16	27	29	1.97
31854929--31855183	55	4.8	54	78	12	253	35	16	26	21	1.94
31854939--31855136	108	1.8	110	91	4	330	33	16	26	23	1.95
31860750--31860779	13	2.3	13	94	0	51	46	23	10	20	1.80
31860767--31860994	43	5.3	43	91	0	294	32	26	13	27	1.94
31868775--31868802	10	2.8	10	100	0	56	10	32	28	28	1.90
31872034--31872172	6	22.8	6	75	16	117	48	12	17	20	1.80
31872045--31872172	55	2.3	55	91	2	204	48	13	17	20	1.81
31872290--31872355	27	2.5	26	82	7	78	36	22	22	18	1.95
31872314--31872371	27	2.1	27	81	6	64	34	27	20	17	1.95
31872673--31872755	27	3.1	26	87	5	112	37	21	21	19	1.94
31872953--31873149	27	7.3	27	81	1	214	26	19	18	35	1.95
31872981--31873141	82	2.0	82	88	2	243	24	19	19	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31873154--31873671	27	19.2	27	82	4	580	40	9	21	27	1.85
31878361--31878386	11	2.4	11	100	0	52	50	0	19	30	1.48
31882809--31882883	28	2.6	28	83	10	80	44	1	21	33	1.61
31885779--31886019	101	2.4	101	83	2	288	26	14	25	33	1.94
31894062--31894112	27	1.9	26	84	4	66	35	17	27	19	1.94
31894763--31894934	27	6.4	27	84	0	209	25	19	19	36	1.94
31894781--31894935	81	1.9	81	90	0	247	23	18	20	38	1.93
31902339--31902511	27	6.4	27	85	2	222	24	20	19	35	1.95
31903275--31903325	26	1.9	27	84	4	68	58	23	5	11	1.55
31906493--31906666	46	3.8	46	76	12	169	29	27	20	22	1.99
31906501--31906670	92	1.9	91	88	1	259	28	28	21	22	1.99
31914582--31914840	38	6.8	38	88	1	365	30	25	22	21	1.99
31917042--31917224	79	2.3	81	82	7	214	25	27	21	25	1.99
31917023--31917226	40	5.1	40	78	8	211	25	27	21	25	1.99
31925080--31925340	40	6.6	40	83	6	309	26	21	27	24	2.00
31938591--31938853	40	6.6	40	87	3	316	25	20	27	26	1.99
31938630--31938888	80	3.3	80	84	3	238	26	20	27	25	1.99
31940708--31940983	132	2.0	137	91	4	454	40	7	5	46	1.54
31941664--31941698	17	2.0	18	88	5	54	25	0	5	68	1.11
31947206--31947262	9	6.2	9	84	8	62	29	0	0	70	0.88
31947173--31947336	39	4.3	38	89	6	217	36	1	0	60	1.12
31947258--31947349	10	9.1	10	75	17	66	41	2	0	56	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31954444--31954477	17	2.1	17	88	5	52	41	32	5	20	1.76
31955050--31955325	132	2.0	137	91	4	454	40	7	5	46	1.54
31956006--31956040	17	2.0	18	88	5	54	25	0	5	68	1.11
31961565--31961696	11	12.9	11	71	20	99	38	1	0	59	1.06
31961548--31961607	9	6.3	9	75	17	50	30	0	0	70	0.88
31961603--31961696	10	9.1	10	78	15	59	40	2	0	57	1.11
31961515--31961683	80	2.1	78	88	5	241	36	1	0	61	1.11
31961515--31961683	39	4.3	39	90	5	241	36	1	0	61	1.11
31968796--31968829	17	2.1	17	88	5	52	41	32	5	20	1.76
31969402--31969677	132	2.0	137	91	4	454	40	7	5	46	1.54
31970358--31970392	17	2.0	18	88	5	54	25	0	5	68	1.11
31975917--31976058	11	13.9	11	75	18	128	39	0	0	59	1.02
31975900--31975959	9	6.3	9	75	17	50	30	0	0	70	0.88
31975867--31976058	39	4.8	39	88	7	244	38	1	0	60	1.08
31981481--31981550	6	11.8	6	86	3	52	72	10	7	10	1.27
31982428--31982483	7	8.0	7	88	8	71	69	0	16	14	1.19
31982437--31982472	6	5.7	6	93	6	54	72	0	13	13	1.13
31982433--31982472	13	3.1	13	86	13	64	70	0	15	15	1.18
31983753--31984136	128	3.0	128	89	2	567	33	19	22	24	1.97
31984143--31984423	44	6.4	44	72	11	175	26	17	26	29	1.97
31984225--31984542	44	7.2	44	73	10	179	26	20	26	26	1.99
31984124--31984542	218	1.9	217	90	2	671	27	19	25	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31984560--31984802	50	4.9	50	72	6	181	30	21	22	25	1.99
31984530--31984800	99	2.7	100	82	5	325	30	21	22	25	1.99
31984818--31985113	128	2.3	127	89	0	439	34	23	17	24	1.96
31985934--31985982	22	2.2	23	89	7	75	12	4	2	81	0.91
31986735--31986770	18	1.9	20	88	11	58	33	2	0	63	1.08
31988215--31988269	18	3.0	18	82	10	67	50	0	23	25	1.49
31988215--31988265	19	2.7	19	87	6	68	52	0	23	23	1.47
31989087--31989119	17	1.9	17	93	0	57	15	27	33	24	1.95
31995003--31995046	16	2.9	15	84	15	63	38	0	2	59	1.10
31995757--31995824	26	2.5	27	86	11	95	67	0	0	32	0.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221