genome.fa.s26.2.7.7.80.10.50.1000.210.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Length:  64892201

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   

This is table  210  of  221  ( 26413 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61645977--61646071	23	4.2	22	75	12	77	82	7	5	5	0.96
61645977--61646059	35	2.4	34	80	4	78	81	8	3	6	0.95
61646922--61648879	78	25.3	76	84	8	1992	27	16	20	35	1.94
61646947--61648842	231	8.2	230	88	5	2227	27	16	20	34	1.94
61649014--61649146	30	4.4	30	76	8	128	36	19	3	40	1.67
61649651--61649683	16	2.0	17	94	5	59	72	0	27	0	0.85
61649654--61649737	28	3.0	28	77	10	91	73	0	26	0	0.83
61649658--61649728	25	2.9	25	74	15	67	73	0	26	0	0.84
61649656--61649735	14	5.7	14	76	15	76	73	0	26	0	0.83
61649657--61649735	7	11.3	7	73	10	54	74	0	25	0	0.82
61649832--61649866	16	2.1	17	89	5	54	74	8	17	0	1.06
61650022--61650091	10	7.2	10	81	12	83	81	0	18	0	0.69
61650022--61650103	19	4.3	19	80	9	94	80	0	19	0	0.71
61650022--61650103	21	4.2	20	82	11	100	80	0	19	0	0.71
61650434--61650500	17	3.8	16	76	19	62	25	16	13	44	1.84
61650423--61650501	37	2.1	37	85	0	104	32	16	11	39	1.84
61650426--61650502	16	4.4	17	72	19	68	29	16	11	41	1.84
61650630--61650801	36	4.9	35	77	9	154	29	13	9	47	1.76
61650634--61650800	18	9.5	18	75	13	120	29	14	8	47	1.74
61650634--61650800	17	9.5	17	73	14	101	29	14	8	47	1.74
61651279--61651329	24	2.0	24	88	7	75	58	0	0	41	0.98
61651293--61651345	28	2.0	25	82	10	61	56	3	0	39	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61660747--61660807	9	6.4	9	73	17	52	26	9	0	63	1.25
61660755--61660804	18	2.5	20	81	15	68	28	12	0	60	1.32
61660764--61660815	18	2.9	18	83	8	70	26	9	1	61	1.38
61660764--61660806	19	2.3	18	92	4	68	27	11	0	60	1.31
61668285--61668328	21	2.2	21	88	11	67	43	18	0	38	1.50
61668867--61669175	106	2.9	108	79	2	329	30	15	19	33	1.94
61669949--61670086	68	2.0	68	87	4	199	39	8	13	39	1.75
61677406--61677448	23	1.9	22	95	4	77	55	2	6	34	1.39
61679485--61679509	13	1.9	13	100	0	50	84	16	0	0	0.63
61680555--61680591	6	6.5	6	81	12	51	16	0	0	83	0.64
61680599--61680640	15	3.1	14	90	10	61	14	0	14	71	1.15
61680757--61680859	12	8.6	12	75	19	56	18	0	11	68	1.25
61680747--61680849	25	4.2	25	81	10	97	18	1	12	66	1.32
61680756--61680860	37	3.0	35	79	18	114	18	0	13	67	1.28
61680766--61680860	9	10.7	9	73	16	65	17	1	12	68	1.27
61681461--61681603	74	1.9	74	91	2	234	25	23	15	35	1.94
61688615--61688672	30	1.9	30	86	6	82	41	8	1	48	1.44
61689558--61689669	39	3.1	35	73	13	100	61	3	2	32	1.27
61689662--61689715	23	2.4	23	87	3	74	61	1	1	35	1.18
61689659--61689784	20	6.2	20	67	18	62	63	5	1	29	1.26
61689697--61689772	39	1.9	38	82	10	91	61	7	1	28	1.32
61694388--61694412	7	3.6	7	100	0	50	72	0	0	28	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61699093--61699228	73	1.9	70	80	7	157	49	11	17	21	1.78
61707726--61707916	87	2.2	87	81	9	212	35	16	21	26	1.94
61708011--61708108	38	2.6	38	86	0	133	33	12	18	35	1.88
61708011--61708133	38	3.2	38	82	2	122	34	13	18	33	1.89
61708294--61708318	13	1.9	13	100	0	50	32	4	24	40	1.73
61709411--61709536	43	2.9	42	79	10	130	21	15	28	34	1.94
61710502--61710795	23	12.7	23	87	2	356	27	12	19	40	1.87
61710500--61710795	116	2.6	116	85	1	398	27	12	19	40	1.87
61712990--61713063	3	24.7	3	77	13	64	67	2	2	27	1.17
61715940--61715990	22	2.3	22	96	0	93	27	31	0	41	1.56
61716045--61716112	31	2.2	32	94	5	122	32	0	0	67	0.91
61716205--61716234	14	2.1	15	93	6	53	26	0	6	66	1.16
61717193--61717217	7	3.6	7	100	0	50	28	0	12	60	1.32
61717869--61717903	18	1.9	18	88	0	52	25	34	8	31	1.86
61718418--61718443	5	5.2	5	100	0	52	38	42	0	19	1.51
61718428--61718872	29	15.8	29	89	5	682	46	28	0	24	1.52
61718800--61718837	18	2.0	20	85	10	53	50	23	0	26	1.50
61718870--61719053	56	3.3	56	85	6	275	35	11	5	46	1.65
61724073--61724122	26	1.9	26	88	8	75	2	12	14	72	1.22
61726063--61726094	13	2.5	13	94	0	55	25	12	15	46	1.81
61730624--61730714	46	2.0	46	97	0	173	27	13	15	43	1.83
61731030--61731162	68	1.9	69	93	1	223	29	29	3	37	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61731499--61731711	106	2.0	106	89	1	329	38	16	17	27	1.91
61733088--61733195	51	2.1	52	78	11	116	13	12	3	70	1.30
61733175--61733228	22	2.3	24	87	6	76	12	1	5	79	0.98
61733192--61733244	21	2.5	22	81	12	65	11	7	7	73	1.24
61737376--61737451	12	6.4	12	79	8	66	59	2	3	34	1.30
61737388--61737451	3	21.3	3	83	0	83	60	3	3	32	1.28
61742989--61743355	46	7.6	47	84	9	372	34	14	22	28	1.94
61742989--61743355	98	3.7	97	83	9	474	34	14	22	28	1.94
61743003--61743355	196	1.8	196	91	0	580	34	14	22	28	1.93
61743319--61743447	37	3.5	37	97	0	240	37	17	19	25	1.94
61744671--61744744	36	2.1	34	83	16	89	43	5	1	50	1.33
61746634--61746663	15	2.0	15	93	0	51	80	0	16	3	0.85
61747145--61747187	2	23.0	2	84	13	56	44	2	0	53	1.13
61747148--61747190	23	1.9	23	95	4	79	39	4	0	55	1.20
61747133--61747272	67	2.1	67	85	8	185	33	8	2	55	1.45
61747133--61747272	69	2.1	67	84	8	176	33	8	2	55	1.45
61747340--61747379	21	1.9	21	89	0	62	27	2	0	70	1.01
61751125--61751193	28	2.5	28	80	2	77	36	27	8	27	1.86
61751880--61751971	17	5.4	16	70	21	62	43	9	8	38	1.69
61751951--61752005	20	2.7	20	83	10	67	32	14	14	38	1.87
61751951--61751998	21	2.3	21	86	10	64	31	12	12	43	1.80
61751882--61751972	36	2.6	37	85	10	113	43	9	8	37	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61752008--61752048	22	2.0	20	85	9	55	46	7	4	41	1.53
61752075--61752378	18	16.8	18	70	13	173	44	9	13	32	1.77
61752075--61752346	36	7.7	35	76	9	223	43	9	14	32	1.77
61752075--61752346	17	15.3	17	72	16	133	43	9	14	32	1.77
61752324--61752369	22	2.1	22	83	0	56	41	8	6	43	1.61
61752075--61752378	17	16.8	17	66	13	110	44	9	13	32	1.77
61753074--61753113	14	2.8	14	80	3	53	0	32	0	67	0.91
61753086--61753142	4	13.8	4	75	14	53	1	28	0	70	0.98
61753105--61753142	19	2.0	19	89	0	58	2	21	0	76	0.91
61753246--61753306	27	2.2	28	79	2	70	1	19	4	73	1.10
61753389--61753427	11	3.5	11	82	6	51	0	28	15	56	1.40
61753672--61753799	29	4.4	28	73	13	98	40	3	20	35	1.71
61753756--61753822	28	2.3	30	92	5	111	40	4	14	40	1.67
61755930--61756041	55	2.0	56	91	1	181	43	8	8	38	1.67
61758124--61758173	17	2.9	16	80	11	55	38	20	12	30	1.88
61758126--61758172	18	2.7	17	80	9	51	40	21	12	25	1.89
61759446--61759477	3	10.7	3	100	0	64	34	0	0	65	0.93
61760068--61760286	110	2.0	112	90	3	354	32	14	17	35	1.90
61760088--61760311	110	2.1	108	86	4	290	30	14	18	36	1.90
61763831--61763865	9	3.7	9	88	11	52	82	0	17	0	0.66
61765939--61766077	43	3.2	42	66	12	111	26	20	24	28	1.99
61766069--61766282	44	4.9	44	69	12	152	25	24	26	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61765959--61766304	88	4.0	88	87	3	418	26	22	25	25	2.00
61766102--61766238	43	3.1	43	72	12	143	26	23	26	24	2.00
61766318--61767492	174	6.8	174	94	1	1991	30	20	21	27	1.98
61767384--61767651	140	1.9	140	90	3	432	33	16	21	28	1.95
61768436--61768468	12	2.8	12	86	4	50	12	6	0	81	0.85
61769085--61769125	3	13.7	3	100	0	82	34	0	0	65	0.93
61769712--61769930	110	2.0	112	90	3	354	32	14	17	35	1.90
61769732--61769955	110	2.1	108	86	4	308	30	14	18	36	1.90
61774926--61774972	21	2.2	22	92	3	78	21	19	38	21	1.94
61778204--61778237	17	2.0	17	88	0	50	32	8	11	47	1.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221