genome.fa.s26.2.7.7.80.10.50.1000.157.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Length:  64892201

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   

This is table  157  of  221  ( 26413 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47615251--47615764	182	2.8	181	85	4	665	26	21	19	31	1.97
47615265--47615718	138	3.3	136	75	13	451	26	21	19	32	1.97
47626220--47626291	5	14.8	5	74	21	64	38	0	4	56	1.18
47626249--47626291	19	2.3	19	92	8	70	41	0	0	58	0.98
47626296--47626335	18	2.2	19	90	4	64	80	2	15	2	0.93
47627205--47627338	44	3.0	45	83	4	162	35	13	23	27	1.93
47637585--47638005	132	3.2	132	86	0	547	25	24	19	30	1.98
47637733--47637941	44	4.8	44	71	9	138	26	26	18	28	1.98
47637996--47638759	45	17.0	45	77	7	657	29	24	17	29	1.97
47647327--47647368	22	1.9	22	90	0	66	33	2	0	64	1.07
47649877--47649902	13	2.0	13	100	0	52	15	0	0	84	0.62
47652034--47652137	13	8.2	13	76	10	90	50	4	5	38	1.47
47652034--47652101	27	2.6	27	80	2	66	51	4	5	38	1.46
47652073--47652139	35	1.9	35	90	0	107	46	5	7	40	1.57
47654013--47654051	14	2.9	14	88	3	53	41	0	48	10	1.37
47654025--47654053	7	4.1	7	100	0	58	41	0	44	13	1.44
47654028--47654071	14	3.1	14	86	0	52	52	0	27	20	1.47
47654683--47654707	13	1.9	13	100	0	50	32	8	8	52	1.60
47654945--47654994	19	2.6	19	100	0	100	26	32	20	22	1.98
47668523--47668804	41	6.6	41	72	10	165	31	19	20	28	1.97
47668509--47668842	128	2.6	129	87	3	460	32	18	20	28	1.96
47668781--47668893	44	2.6	44	92	0	190	30	15	22	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47670887--47670911	9	2.8	9	100	0	50	8	0	0	92	0.40
47671963--47672310	44	7.8	44	69	11	172	31	18	22	27	1.97
47671942--47672114	90	2.0	88	85	5	233	28	20	24	25	1.99
47672074--47672417	178	1.9	177	85	1	474	31	18	22	27	1.97
47672176--47672418	44	5.5	44	69	5	148	32	16	23	27	1.96
47672209--47672896	219	3.1	217	85	6	872	28	19	24	27	1.99
47672647--47672916	44	6.2	44	71	12	164	27	20	25	27	1.99
47672951--47673107	50	3.1	49	75	3	143	33	22	19	24	1.97
47674575--47674632	6	9.2	6	76	10	53	17	5	3	74	1.15
47674658--47674697	3	13.3	3	100	0	80	32	0	0	67	0.91
47676354--47676471	13	9.3	14	75	15	71	37	5	5	51	1.48
47676358--47676445	40	2.2	40	91	4	142	36	3	5	54	1.41
47676378--47676470	27	3.7	27	75	17	94	37	4	5	52	1.44
47676354--47676445	13	6.9	13	81	4	103	36	4	5	53	1.44
47676933--47677022	44	2.0	44	95	0	162	43	6	15	34	1.73
47676970--47677014	18	2.4	20	85	10	60	44	4	15	35	1.67
47676946--47677021	24	3.3	23	68	26	63	47	6	14	31	1.70
47677920--47678003	18	4.6	18	71	11	64	28	4	9	57	1.51
47677919--47677997	38	2.1	38	85	2	106	27	5	8	58	1.50
47677932--47677997	19	3.5	19	79	2	71	30	3	10	56	1.49
47682655--47682721	35	1.9	35	87	0	98	31	22	23	22	1.98
47684319--47684372	25	2.2	25	96	0	99	27	22	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47684327--47684418	25	3.7	25	80	8	91	29	25	22	22	1.99
47689628--47689682	27	2.0	27	85	0	74	40	25	3	30	1.73
47691595--47691639	3	15.0	3	95	0	81	68	0	0	31	0.89
47692116--47692169	19	2.8	19	94	0	99	37	16	9	37	1.81
47692093--47692169	38	1.9	40	87	10	113	38	16	7	36	1.78
47692546--47692831	44	6.5	43	71	13	197	28	20	19	31	1.97
47693195--47693314	44	2.7	44	89	2	179	28	25	18	28	1.98
47694773--47694805	14	2.3	15	89	5	50	27	33	12	27	1.92
47701013--47701087	19	4.0	19	70	20	68	36	26	1	36	1.65
47701887--47701927	13	3.2	13	86	6	57	0	29	0	70	0.87
47702128--47702182	8	6.8	8	76	12	58	61	1	0	36	1.06
47703697--47703734	20	1.9	20	88	0	58	63	0	0	36	0.95
47704140--47704193	19	2.8	19	94	0	99	37	16	9	37	1.81
47704117--47704193	38	1.9	40	87	10	113	38	16	7	36	1.78
47709312--47709416	42	2.5	41	80	8	124	29	18	15	37	1.91
47709698--47709777	42	2.0	40	82	7	99	45	2	3	48	1.33
47712330--47712406	26	3.0	26	88	0	109	23	14	24	37	1.92
47713466--47713513	21	2.2	22	88	3	71	22	25	37	14	1.92
47714036--47714060	13	1.9	13	100	0	50	16	0	20	64	1.30
47718925--47719030	29	3.7	29	85	0	122	41	5	20	32	1.76
47718921--47719030	58	1.9	58	82	0	139	41	5	21	30	1.76
47723891--47723960	19	3.7	18	73	19	61	68	0	1	30	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47723893--47723961	9	7.4	9	75	16	61	69	0	1	28	0.97
47725074--47725104	14	2.2	14	100	0	62	25	29	19	25	1.99
47725553--47725592	20	2.0	20	90	0	62	30	10	10	50	1.69
47725538--47725604	34	1.9	35	87	3	100	32	8	11	46	1.72
47725762--47725812	26	2.2	24	78	21	56	60	5	0	33	1.21
47731156--47731189	17	2.0	17	94	0	59	14	0	50	35	1.44
47742362--47742406	17	2.6	17	96	3	81	20	44	20	15	1.87
47743097--47743130	15	2.3	15	90	10	52	82	2	2	11	0.89
47744583--47744631	22	2.2	22	82	10	55	40	2	18	38	1.62
47746630--47746731	27	3.8	27	82	10	111	23	26	14	35	1.94
47746653--47746732	26	3.0	26	83	1	106	26	23	13	36	1.92
47748230--47748288	30	2.0	30	93	0	100	25	18	10	45	1.81
47751048--47751117	28	2.5	28	75	6	72	22	27	14	35	1.93
47751098--47751149	27	1.9	27	84	7	70	34	17	15	32	1.91
47758874--47758913	21	1.9	21	85	10	55	37	5	0	57	1.21
47759271--47759317	21	2.2	21	85	7	60	53	21	6	19	1.67
47759825--47759868	19	2.3	19	92	0	70	50	2	13	34	1.55
47762450--47762491	21	2.0	21	100	0	84	38	9	9	42	1.70
47764523--47764882	46	8.6	45	80	15	382	35	14	22	28	1.93
47764557--47764747	36	5.0	36	83	12	256	37	14	20	28	1.91
47764523--47764839	82	3.9	82	80	15	384	35	13	21	28	1.92
47764557--47764793	118	2.0	118	94	0	420	36	14	21	28	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47768576--47768652	38	2.0	38	92	0	127	32	18	6	42	1.75
47776310--47776385	23	3.4	23	85	3	93	32	21	21	25	1.97
47776585--47776673	36	2.4	38	81	9	96	32	22	1	43	1.61
47777611--47777666	17	3.5	16	76	14	53	41	3	1	53	1.29
47777623--47777660	14	2.4	17	87	12	55	50	0	2	47	1.15
47789193--47789268	37	2.0	37	87	2	107	18	23	22	35	1.96
47790725--47790769	23	2.0	23	90	0	72	46	0	2	51	1.13
47797804--47797940	68	2.0	68	97	0	256	41	23	11	23	1.87
47802177--47802230	28	1.9	28	100	0	108	37	11	7	44	1.68
47803599--47803671	27	2.7	27	82	4	94	19	32	23	24	1.97
47805615--47805775	62	2.6	62	82	0	205	29	27	21	22	1.99
47807304--47807511	45	4.7	44	76	6	179	31	20	15	33	1.93
47807552--47808221	95	7.1	95	87	2	891	30	18	16	35	1.93
47807616--47808179	51	11.8	50	70	13	391	30	17	16	35	1.93
47807568--47808135	44	12.1	44	68	12	265	29	18	16	35	1.93
47807408--47808259	190	4.5	185	79	9	749	29	19	16	34	1.94
47819100--47819140	7	5.9	7	97	0	64	78	0	7	14	0.96
47819099--47819146	14	3.4	14	88	2	69	77	0	6	16	0.97
47821507--47821586	39	2.1	39	100	0	160	31	5	25	38	1.77
47824063--47824112	21	2.4	22	83	6	59	14	8	20	58	1.61
47827212--47827248	19	1.9	19	94	0	65	37	21	5	35	1.77
47827464--47827637	62	2.8	62	80	3	172	28	21	22	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47830663--47830893	74	3.1	77	85	5	301	53	11	8	26	1.64
47833202--47833231	16	1.9	15	93	6	51	53	6	0	40	1.27
47833233--47833534	103	2.9	99	77	13	324	52	15	0	31	1.50
47833519--47833749	72	3.2	72	95	1	403	54	13	1	30	1.47
47833519--47833698	34	5.1	34	67	14	103	53	15	1	29	1.51
47833767--47833890	60	2.1	60	96	0	230	54	12	0	33	1.37
47833766--47833857	27	3.2	27	64	16	67	54	15	0	30	1.41
47834050--47834085	3	12.0	3	100	0	72	0	33	0	66	0.92
47836416--47836458	20	2.2	20	91	0	68	58	4	4	32	1.39
47841748--47841845	25	4.0	25	78	6	92	19	29	21	29	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221