genome.fa.s26.2.7.7.80.10.50.1000.121.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Length:  64892201

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   

This is table  121  of  221  ( 26413 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37173183--37173215	16	2.1	16	100	0	66	21	36	6	36	1.78
37186241--37186346	35	3.1	34	73	21	87	43	17	9	29	1.81
37192817--37192971	83	1.9	83	83	2	204	41	16	18	23	1.89
37205417--37205451	18	1.9	18	88	11	54	2	17	2	77	1.02
37214050--37214106	21	2.7	22	76	10	66	45	12	14	28	1.80
37214649--37214693	16	2.8	16	82	0	54	24	20	17	37	1.93
37215389--37215513	55	2.3	55	79	4	137	21	26	26	25	2.00
37219710--37219785	20	3.8	20	77	10	82	48	6	14	30	1.69
37220782--37220834	20	2.7	19	88	8	79	43	16	13	26	1.85
37223971--37224015	21	2.1	21	95	0	81	51	4	28	15	1.63
37224852--37224877	11	2.4	11	100	0	52	73	0	0	26	0.84
37224984--37225040	22	2.4	25	74	20	66	70	10	7	12	1.34
37224991--37225037	22	2.1	23	88	4	69	70	10	8	10	1.35
37230243--37230295	26	2.0	26	100	0	106	18	15	22	43	1.87
37245821--37245845	2	12.5	2	100	0	50	0	0	52	48	1.00
37251503--37251536	15	2.2	16	89	5	52	64	0	8	26	1.22
37252510--37252577	27	2.6	28	77	15	74	64	0	0	35	0.94
37252499--37252576	12	6.2	13	70	19	58	61	0	0	38	0.96
37252532--37252585	24	2.2	26	86	6	76	57	0	0	42	0.98
37252990--37253030	16	2.7	15	88	3	55	34	0	2	63	1.08
37253007--37253059	20	2.7	19	82	5	61	32	0	3	64	1.12
37257026--37257074	22	2.2	23	81	3	55	12	14	2	71	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37257482--37257554	29	2.4	29	84	4	83	47	12	13	26	1.78
37260454--37260491	18	2.1	18	100	0	76	28	39	0	31	1.57
37260538--37260571	15	2.3	15	89	0	50	29	5	2	61	1.34
37260742--37260873	69	1.9	69	96	0	246	35	16	7	40	1.77
37264212--37264265	27	2.0	27	88	0	81	24	20	29	25	1.99
37271493--37271531	19	2.1	19	95	0	69	33	5	17	43	1.72
37274008--37274060	26	2.0	26	100	0	106	26	11	22	39	1.88
37279166--37279221	26	2.2	26	80	6	60	35	25	21	17	1.95
37289728--37289761	16	2.1	16	88	0	50	44	2	0	52	1.16
37291265--37291306	17	2.5	17	84	7	59	35	0	0	64	0.94
37292043--37292069	11	2.5	11	100	0	54	44	0	0	55	0.99
37316955--37317036	19	4.4	18	87	3	76	37	8	18	35	1.81
37316957--37317029	19	3.8	19	90	0	119	36	9	16	36	1.81
37316970--37317052	19	4.0	22	83	10	79	37	7	16	38	1.77
37317018--37317062	23	2.0	23	86	4	65	33	4	15	46	1.66
37317488--37317527	3	13.3	3	84	10	55	32	0	0	67	0.91
37317472--37317526	15	3.7	15	74	16	53	30	0	1	67	1.01
37317474--37317525	12	4.1	12	80	14	52	28	0	1	69	0.99
37317786--37317901	51	2.3	52	80	7	132	31	5	6	56	1.47
37324179--37324493	44	7.2	44	64	13	137	26	30	24	19	1.98
37324086--37324839	88	8.6	88	88	0	1067	27	27	24	20	1.99
37324839--37325214	44	8.7	44	86	6	500	27	18	26	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37324840--37325168	170	1.9	170	91	2	536	27	18	26	27	1.98
37326010--37326093	19	4.4	18	79	8	71	38	8	16	36	1.79
37326012--37326086	19	3.8	19	87	6	114	37	9	14	38	1.79
37326013--37326075	21	3.1	21	93	4	103	38	9	12	39	1.76
37326025--37326109	23	4.0	22	74	22	74	37	7	15	40	1.74
37326075--37326119	23	2.0	23	86	4	65	33	4	15	46	1.66
37326537--37326573	3	12.3	3	88	11	58	35	0	0	64	0.94
37326831--37326942	51	2.2	51	79	7	122	33	6	5	54	1.48
37331063--37331155	46	2.0	46	100	0	186	23	21	8	46	1.79
37331067--37331165	46	2.2	46	94	3	173	23	21	9	46	1.79
37338221--37338289	12	5.8	12	77	6	59	31	8	1	57	1.38
37338229--37338289	15	4.1	15	77	8	61	32	9	1	55	1.42
37341367--37341449	39	2.1	39	90	0	139	27	16	18	37	1.92
37343315--37343716	144	2.7	148	83	9	509	41	4	9	44	1.56
37343577--37343836	119	2.2	118	87	6	368	42	3	11	42	1.57
37346853--37346936	15	5.6	15	78	5	80	63	1	5	29	1.26
37346853--37346938	12	7.2	12	78	5	75	62	1	5	30	1.26
37346906--37346938	9	3.7	9	100	0	66	75	0	0	24	0.80
37348443--37348557	44	2.7	43	80	7	128	28	20	20	29	1.98
37348583--37349140	98	5.7	98	81	5	521	25	20	22	30	1.98
37348661--37349163	192	2.6	190	82	7	568	24	20	22	32	1.98
37348962--37349144	91	2.0	92	93	1	314	25	20	22	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37354504--37354627	30	4.1	30	88	0	176	41	16	10	31	1.82
37355272--37355306	16	2.2	16	94	0	61	17	17	17	48	1.81
37360915--37361142	23	9.7	23	67	19	89	42	18	13	25	1.86
37360947--37361167	70	3.1	71	90	3	322	42	18	13	25	1.86
37360980--37361161	23	7.7	23	73	10	136	45	17	13	23	1.84
37362767--37362817	26	1.9	27	84	4	68	37	3	0	58	1.16
37366076--37366119	22	2.0	23	81	4	54	40	9	9	40	1.68
37366117--37366184	33	2.1	33	94	0	118	14	5	35	44	1.70
37366714--37366783	27	2.6	26	91	6	113	24	12	25	37	1.91
37371813--37371866	28	1.9	28	88	0	81	14	11	18	55	1.68
37376527--37376762	50	4.7	50	83	1	260	25	23	29	22	1.99
37378948--37378984	18	2.1	18	94	0	65	56	8	21	13	1.63
37379112--37379150	18	2.3	16	86	8	51	35	7	20	35	1.81
37379392--37379460	34	2.0	34	100	0	138	37	11	17	33	1.86
37382060--37382117	19	3.0	18	75	12	53	56	3	5	34	1.38
37382025--37382135	49	2.3	47	80	6	107	58	2	2	36	1.26
37382011--37382134	9	13.3	9	71	20	69	59	3	2	34	1.26
37387142--37387192	24	2.1	25	82	10	61	45	0	1	52	1.12
37388315--37388873	274	2.0	277	90	1	874	41	13	10	34	1.79
37393012--37393049	12	3.2	12	82	14	51	26	10	15	47	1.78
37396936--37396974	21	1.9	20	89	5	60	61	0	0	38	0.96
37396920--37396979	29	2.0	30	81	9	70	61	1	0	36	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37404776--37404935	84	1.9	84	88	2	241	44	10	10	35	1.73
37404902--37405101	86	2.3	87	83	7	257	43	10	13	33	1.78
37409224--37409283	26	2.4	24	79	15	68	21	5	13	60	1.52
37416605--37416639	15	2.3	15	95	0	61	31	11	17	40	1.85
37421332--37421377	19	2.4	19	85	0	65	32	15	2	50	1.56
37423710--37423740	3	10.3	3	100	0	62	32	0	0	67	0.91
37424298--37424369	36	2.0	36	100	0	144	19	25	16	38	1.92
37424713--37424850	40	3.5	40	75	5	127	38	23	18	18	1.93
37425754--37425815	21	2.9	21	77	13	65	24	0	37	38	1.56
37426416--37426448	12	2.9	12	86	13	52	51	0	6	42	1.26
37426417--37426476	10	5.8	10	75	11	50	50	0	5	45	1.23
37426411--37426481	30	2.3	29	81	13	81	47	1	4	46	1.30
37426729--37426780	19	2.7	19	78	21	63	38	7	0	53	1.30
37432334--37432386	26	2.0	26	82	7	63	7	15	3	73	1.20
37450951--37450996	22	2.1	21	84	11	58	78	0	10	10	0.97
37451878--37452280	44	8.7	44	70	16	179	29	21	18	30	1.97
37451677--37452238	242	2.3	241	90	3	880	29	21	18	30	1.97
37452120--37452280	88	1.8	88	89	2	252	29	21	19	29	1.98
37452111--37452286	44	4.0	44	81	0	217	28	21	19	30	1.98
37452326--37452569	102	2.4	102	93	0	416	28	22	18	31	1.97
37452548--37452590	21	2.1	21	86	4	61	18	27	11	41	1.85
37452326--37452569	51	4.8	51	80	0	290	28	22	18	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37452579--37452677	51	1.9	51	91	0	162	35	18	14	32	1.90
37452661--37452897	132	1.8	131	83	2	314	27	23	19	29	1.98
37452840--37453299	88	5.2	88	87	0	607	28	22	18	30	1.97
37454601--37454647	6	8.0	6	90	4	69	0	21	0	78	0.75
37454601--37454646	17	2.6	17	89	3	65	0	21	0	78	0.76
37454603--37454647	23	2.0	23	90	0	72	0	20	0	80	0.72
37459931--37459991	21	2.8	21	85	9	70	47	1	13	37	1.52
37460746--37460789	21	2.2	20	88	12	63	79	2	6	11	1.01
37460753--37460804	26	2.0	26	82	14	63	75	3	7	13	1.17
37467829--37467881	26	2.0	26	82	7	63	71	1	20	5	1.16

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221