genome.fa.s26.2.7.7.80.10.50.1000.170.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Length:  64892201

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   

This is table  170  of  221  ( 26413 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50967007--50967036	5	6.0	5	100	0	60	20	0	20	60	1.37
50973856--50973932	22	3.6	21	85	5	100	32	27	1	38	1.65
50973904--50973962	30	2.0	30	93	0	100	30	35	0	33	1.58
50973882--50973984	52	2.0	51	84	5	136	33	32	0	34	1.58
50973934--50973987	22	2.5	22	82	8	67	33	33	0	33	1.58
50974173--50974206	15	2.3	15	90	5	52	26	0	5	67	1.13
50976362--50976404	23	2.0	20	95	4	59	48	20	4	25	1.69
50976339--50976927	59	10.5	56	83	10	653	47	23	1	28	1.58
50976632--50976679	23	2.1	23	92	0	78	50	20	0	29	1.49
50976750--50976871	23	4.6	24	71	25	86	48	22	1	27	1.60
50976816--50976965	23	6.3	23	74	14	117	45	25	1	28	1.62
50976888--50976950	18	3.2	18	74	20	54	44	28	0	26	1.55
50976339--50976923	28	20.9	28	82	11	650	47	23	1	28	1.58
50977144--50977203	27	2.2	27	96	0	111	38	6	11	43	1.68
50980225--50980488	125	2.1	126	83	2	336	32	21	15	30	1.95
50980716--50980777	28	2.2	28	85	5	81	45	16	11	27	1.81
50993923--50994035	47	2.4	47	92	2	183	34	16	13	35	1.88
50999646--50999735	11	8.6	11	71	21	61	65	0	2	32	1.05
50999657--50999749	39	2.4	39	98	1	179	69	0	2	27	0.99
51001635--51001734	28	3.6	28	93	0	164	31	12	27	30	1.92
51021756--51021811	13	4.4	13	72	4	51	69	1	1	26	1.08
51021758--51021813	24	2.3	25	78	9	62	67	1	1	28	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51021852--51021927	31	2.4	31	82	6	82	40	0	30	28	1.57
51026995--51027174	48	3.7	48	88	5	238	32	28	15	23	1.95
51026995--51027194	101	2.0	95	84	9	251	34	28	14	23	1.94
51030706--51030797	19	4.8	19	94	0	166	36	8	16	38	1.79
51030706--51030820	38	2.9	38	93	5	185	36	7	16	39	1.78
51031576--51031609	14	2.3	14	90	10	50	44	0	5	50	1.26
51033904--51033929	12	2.2	12	100	0	52	61	0	23	15	1.33
51036442--51036474	14	2.3	15	89	5	50	27	12	33	27	1.92
51037862--51038005	44	3.3	43	65	12	112	25	25	24	25	2.00
51037813--51038478	88	7.6	88	91	0	1044	27	27	23	21	1.99
51038478--51038576	44	2.2	44	91	3	155	26	20	22	31	1.98
51039011--51039296	84	3.3	84	71	13	222	29	20	23	27	1.99
51039090--51039425	45	7.6	45	71	12	198	30	20	23	25	1.98
51039936--51040046	19	5.8	19	92	0	177	37	9	16	36	1.80
51040231--51040275	23	2.0	23	81	0	54	22	0	15	62	1.33
51041432--51041671	115	2.1	115	96	0	444	31	13	13	41	1.84
51042003--51044367	933	2.5	937	89	3	3583	31	19	20	28	1.97
51046600--51049280	952	2.8	952	93	0	4571	30	19	20	28	1.97
51050783--51050847	22	2.9	23	82	11	73	27	30	0	41	1.56
51050788--51050850	33	1.9	33	87	12	94	28	30	0	41	1.56
51050781--51050848	11	6.3	10	78	20	66	26	30	0	42	1.56
51050852--51050914	29	2.3	27	83	8	74	39	1	4	53	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51055537--51055876	126	2.8	123	87	5	451	28	20	17	33	1.95
51055888--51056205	97	3.3	95	80	6	295	41	17	2	38	1.63
51055901--51056132	97	2.4	97	85	3	299	38	18	2	40	1.62
51055943--51056161	96	2.3	98	84	4	266	41	17	1	39	1.61
51056231--51056288	7	8.0	7	77	7	62	53	39	0	6	1.28
51056247--51056290	21	2.0	22	91	4	72	52	40	0	6	1.28
51067285--51067344	22	2.7	22	84	5	77	35	11	18	35	1.87
51067525--51067570	22	2.1	21	84	11	58	30	2	21	45	1.64
51069323--51069408	45	1.9	45	92	0	145	46	24	11	17	1.81
51073582--51073612	16	1.9	16	93	0	53	35	19	16	29	1.93
51076940--51077025	26	3.3	26	83	4	95	36	24	24	15	1.94
51077445--51077486	21	2.0	21	90	9	68	40	19	0	40	1.51
51082136--51082222	42	2.1	42	100	0	174	19	31	9	40	1.83
51082897--51082926	14	2.1	14	100	0	60	26	20	0	53	1.46
51091012--51091042	15	2.1	15	93	0	53	35	9	9	45	1.70
51093283--51093309	11	2.5	11	100	0	54	22	7	18	51	1.70
51094722--51094857	44	3.0	46	69	18	129	44	2	4	47	1.38
51094829--51094870	18	2.3	18	87	0	57	42	0	4	52	1.22
51094704--51094907	91	2.3	91	85	3	270	45	4	3	46	1.40
51094910--51094984	27	2.8	27	70	22	68	41	2	0	56	1.13
51094924--51094957	17	2.0	17	88	11	52	44	2	0	52	1.16
51094960--51095170	66	3.4	64	69	20	194	41	2	6	49	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51094999--51095177	57	3.1	54	65	22	137	42	2	7	48	1.43
51095047--51095098	15	3.6	15	80	12	56	44	0	1	53	1.11
51094923--51095219	120	2.5	120	93	3	510	42	2	5	50	1.37
51094982--51095168	61	3.1	59	67	20	161	41	2	7	48	1.45
51095176--51095217	15	2.7	16	82	14	52	45	0	2	52	1.13
51095167--51095208	15	2.9	15	82	10	52	47	0	0	52	1.00
51095151--51095423	147	1.9	147	95	1	494	46	2	2	47	1.32
51095310--51095344	18	2.0	17	88	5	52	45	0	0	54	0.99
51095489--51095598	45	2.7	40	81	8	123	31	27	6	34	1.82
51095579--51095630	16	3.2	16	94	0	86	34	36	0	28	1.58
51097089--51097171	43	1.9	43	90	0	130	48	2	26	22	1.63
51100240--51100287	18	2.7	17	77	6	51	27	2	8	62	1.35
51102655--51102687	3	11.3	3	87	6	50	0	30	3	66	1.06
51103441--51103514	30	2.7	27	74	22	73	41	2	0	55	1.14
51107603--51107678	22	3.4	23	78	14	79	26	27	1	44	1.62
51107602--51107678	11	6.9	11	70	24	63	25	27	1	45	1.61
51110040--51110222	45	4.0	45	77	12	208	39	0	12	47	1.45
51110050--51110247	95	2.1	95	93	1	335	40	0	12	46	1.45
51110120--51110345	70	3.2	70	96	0	398	40	0	11	47	1.44
51110050--51110317	25	11.3	25	70	14	201	40	0	12	47	1.44
51113499--51113870	125	3.0	124	85	5	534	32	21	16	29	1.95
51115150--51115232	42	2.0	43	83	7	107	6	27	0	66	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51116011--51116364	185	1.9	184	87	2	514	31	14	29	24	1.94
51126850--51126888	14	2.6	15	84	8	53	46	2	0	51	1.14
51126856--51126891	17	2.0	20	84	15	51	44	2	0	52	1.15
51130709--51130734	12	2.2	12	100	0	52	30	7	15	46	1.74
51142127--51142169	13	3.4	13	74	6	52	53	0	4	41	1.21
51142121--51142170	25	2.0	25	100	0	100	52	0	4	44	1.20
51142945--51143075	42	3.1	42	92	0	208	12	26	12	48	1.77
51157898--51158007	55	2.0	55	96	0	202	30	20	9	40	1.83
51161185--51161341	43	3.7	41	74	11	149	25	18	26	29	1.98
51163805--51164004	42	4.8	42	75	4	138	24	17	18	40	1.91
51169239--51169302	32	2.0	32	93	6	112	40	9	14	35	1.78
51169414--51169477	31	2.1	31	100	0	128	35	21	21	20	1.96
51175847--51175909	30	2.1	30	93	0	108	61	12	6	19	1.51
51179498--51179528	6	5.2	6	92	0	53	0	12	16	70	1.16
51183791--51183860	27	2.6	27	80	8	79	25	2	21	50	1.63
51183829--51183896	35	2.0	33	86	13	95	27	2	19	50	1.62
51185205--51185271	34	1.9	35	87	3	100	43	13	10	32	1.78
51185589--51185812	43	5.3	43	83	3	213	27	28	16	28	1.97
51185597--51185812	85	2.5	86	79	4	215	27	28	16	28	1.97
51190463--51190514	14	3.6	14	74	5	50	42	30	0	26	1.56
51191523--51191766	41	6.0	40	77	7	213	30	25	18	25	1.98
51191537--51191762	81	2.8	79	80	10	233	31	23	18	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51191821--51191924	40	2.7	39	82	7	122	24	23	22	30	1.99
51198230--51198329	28	3.6	28	91	0	155	31	27	11	31	1.91
51202800--51202854	26	2.2	26	83	3	67	16	25	20	38	1.92
51202907--51202968	25	2.5	25	80	10	65	19	29	20	30	1.97
51207683--51207713	16	1.9	16	93	0	53	41	9	0	48	1.36
51215432--51215631	111	1.8	111	87	2	303	23	17	32	27	1.96
51218875--51218906	2	16.0	2	100	0	64	50	0	50	0	1.00
51219779--51219824	22	2.1	21	84	11	58	56	4	2	36	1.31
51221833--51221981	65	2.3	66	80	4	171	30	18	12	37	1.89
51240254--51240374	60	2.0	60	96	0	224	16	23	4	55	1.60

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221