genome.fa.s26.2.7.7.80.10.50.1000.123.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Length:  64892201

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   

This is table  123  of  221  ( 26413 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37868678--37868709	9	3.7	9	95	4	57	34	0	9	56	1.32
37871844--37872259	125	3.3	123	84	5	559	31	22	17	29	1.96
37880970--37881035	29	2.2	30	81	2	71	43	7	19	28	1.78
37883729--37883758	9	3.3	9	90	0	51	13	0	26	60	1.34
37884974--37885009	18	2.1	16	90	10	54	33	0	2	63	1.08
37886099--37886471	127	3.0	127	91	1	590	31	17	23	27	1.97
37886483--37886946	21	21.9	21	79	8	487	26	0	29	44	1.54
37886483--37886954	127	3.7	125	82	7	565	26	0	29	44	1.54
37893233--37893409	46	3.8	46	89	0	273	36	8	25	29	1.85
37893631--37893734	51	2.0	51	100	0	208	30	13	15	40	1.86
37896012--37896043	17	1.9	16	93	6	55	34	18	0	46	1.49
37902871--37903640	86	8.9	87	87	7	1025	23	0	30	45	1.54
37902869--37903640	29	26.6	29	88	4	1047	23	0	30	45	1.54
37903648--37903732	43	2.0	43	88	4	127	47	11	0	41	1.40
37904102--37904142	18	2.3	18	86	0	64	41	4	31	21	1.74
37904796--37904828	7	4.7	7	100	0	66	57	15	0	27	1.38
37905967--37906082	51	2.3	51	98	0	223	43	0	28	26	1.61
37905993--37906076	29	3.1	29	64	22	83	42	0	27	29	1.56
37906003--37906104	22	4.3	22	69	20	80	42	0	29	28	1.56
37916986--37917025	20	2.0	20	90	0	62	37	32	15	15	1.88
37922172--37922206	13	2.7	13	95	0	61	20	25	31	22	1.98
37922407--37922439	10	3.3	10	95	0	57	54	21	6	18	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37928849--37928900	2	26.0	2	96	0	95	50	1	48	0	1.12
37930278--37930307	6	5.0	6	91	0	51	20	16	33	30	1.94
37946588--37946649	3	20.7	3	100	0	124	67	32	0	0	0.91
37948262--37948574	44	7.0	44	76	8	281	26	21	20	31	1.97
37948347--37948721	94	4.1	94	78	10	412	27	20	20	32	1.97
37948262--37948670	182	2.2	182	83	3	527	26	20	20	32	1.97
37961318--37961432	61	1.9	61	87	3	169	47	15	20	16	1.82
37962586--37962631	14	3.3	14	79	8	58	8	0	13	78	0.97
37962671--37962791	41	3.0	41	89	2	183	40	14	22	22	1.90
37965029--37965067	3	13.0	3	100	0	78	33	0	0	66	0.92
37970374--37970553	28	6.5	28	94	2	294	26	13	28	31	1.94
37970374--37970553	55	3.3	55	94	1	299	26	13	28	31	1.94
37970374--37970553	83	2.2	82	93	1	306	26	13	28	31	1.94
37977756--37977935	28	6.5	28	94	2	294	26	13	28	31	1.94
37977756--37977935	55	3.3	55	94	1	299	26	13	28	31	1.94
37977756--37977935	83	2.2	82	93	1	306	26	13	28	31	1.94
37979481--37979683	94	2.2	94	84	1	255	33	19	10	36	1.86
37984441--37984478	6	6.3	6	96	0	67	15	0	28	55	1.41
37991931--37991977	25	2.0	23	91	8	76	46	0	21	31	1.51
37994912--37994960	20	2.7	18	77	22	57	51	4	2	42	1.32
37997422--37997492	23	3.1	23	80	15	92	21	19	23	35	1.96
37998638--37998752	49	2.4	47	80	9	119	31	13	24	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37999785--37999850	23	2.9	23	84	2	71	40	21	18	19	1.91
38004067--38004094	14	2.0	14	100	0	56	28	7	35	28	1.84
38008989--38009041	25	2.1	25	86	6	72	11	9	13	66	1.46
38014673--38014868	89	2.3	85	79	11	209	36	18	8	36	1.81
38014702--38014864	89	1.9	86	85	3	227	38	20	9	31	1.84
38014938--38014981	19	2.4	19	85	11	56	65	4	6	22	1.35
38015196--38015290	20	4.8	20	65	18	54	38	3	2	55	1.27
38015187--38015309	39	3.2	38	75	14	99	34	2	3	60	1.26
38015363--38015551	87	2.2	87	81	3	202	31	7	20	40	1.81
38015752--38015812	31	2.0	31	96	0	113	44	4	14	36	1.67
38019828--38019874	15	3.0	15	78	15	51	78	4	4	12	1.04
38020226--38020311	30	2.9	30	92	3	138	19	34	31	13	1.91
38020387--38020460	5	14.0	5	81	8	67	18	1	2	77	0.97
38020405--38020518	11	10.9	11	77	11	89	11	1	7	79	0.99
38020482--38020519	20	2.0	20	94	5	69	15	0	5	78	0.91
38021529--38021557	8	3.8	8	90	9	51	89	0	10	0	0.48
38047832--38047888	17	3.5	17	70	18	57	31	47	3	17	1.65
38047831--38047900	32	2.2	32	97	0	131	34	45	4	15	1.66
38050696--38050720	13	1.9	13	100	0	50	28	16	0	56	1.41
38054012--38054056	20	2.2	20	84	0	54	33	17	37	11	1.85
38064946--38065218	126	2.2	126	89	0	420	31	18	21	27	1.97
38067964--38068019	26	2.2	26	90	0	85	35	12	17	33	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38067975--38068033	26	2.3	26	78	0	64	42	13	15	28	1.85
38069635--38069668	17	2.0	17	88	0	50	32	35	11	20	1.89
38075714--38075766	22	2.4	22	80	0	61	54	15	13	16	1.71
38076208--38076521	138	2.3	138	83	3	391	28	11	22	36	1.89
38092342--38092462	59	2.1	59	96	3	226	29	29	14	26	1.95
38093956--38094001	23	2.0	23	91	0	74	63	15	4	17	1.47
38094026--38094074	12	4.1	12	81	5	55	69	28	0	2	1.00
38098583--38098634	22	2.4	21	79	17	54	38	0	5	55	1.24
38098485--38098708	121	1.9	120	95	0	403	42	0	5	50	1.31
38098921--38098957	16	2.3	16	95	0	65	21	29	5	43	1.75
38100949--38100985	14	2.5	15	84	16	51	78	13	2	5	1.03
38104459--38104619	41	3.9	41	89	0	250	26	19	22	31	1.98
38112005--38112157	74	2.1	75	82	3	184	32	7	18	41	1.80
38112472--38112571	41	2.4	41	89	0	146	29	20	19	32	1.96
38112568--38112604	19	1.9	19	100	0	74	32	5	10	51	1.60
38121682--38121729	18	2.7	18	77	9	53	41	0	2	56	1.11
38122533--38122584	24	2.3	22	80	9	59	57	0	1	40	1.10
38122673--38122739	28	2.4	30	78	14	79	37	0	7	55	1.28
38131310--38131380	38	1.9	38	88	5	110	29	15	1	53	1.51
38131940--38131986	19	2.5	20	86	13	64	78	10	8	2	1.04
38131947--38131993	14	3.4	14	82	11	53	78	12	6	2	1.02
38133335--38133447	44	2.5	44	84	9	133	29	17	23	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38133559--38134354	143	5.6	143	87	1	992	30	19	22	27	1.98
38133799--38134017	44	4.7	44	70	13	143	26	21	23	27	1.99
38135840--38135928	26	3.5	24	78	10	79	34	2	2	60	1.21
38142100--38142136	19	1.9	19	100	0	74	37	8	21	32	1.83
38144657--38144729	35	2.0	36	92	5	121	52	4	8	35	1.51
38147357--38147384	14	2.0	14	100	0	56	28	14	14	42	1.84
38149413--38149458	6	7.7	6	100	0	92	15	0	0	84	0.62
38149412--38149479	18	3.7	18	78	7	64	19	0	1	79	0.81
38152774--38152841	6	11.5	6	77	14	70	16	1	4	77	0.99
38154876--38154945	27	2.6	27	95	2	113	31	28	12	27	1.93
38154876--38154973	28	3.5	28	90	2	135	31	28	13	26	1.94
38159496--38159569	4	18.5	4	75	18	57	75	0	4	20	0.96
38159495--38159578	22	3.7	22	83	13	100	75	0	3	21	0.96
38159496--38159578	6	13.5	6	75	20	50	75	0	3	20	0.94
38161969--38162015	24	2.0	24	95	0	85	42	23	8	25	1.82
38163510--38163545	15	2.5	14	86	8	54	44	8	0	47	1.33
38165053--38165117	16	4.4	16	69	25	61	20	26	0	53	1.45
38165061--38165122	15	4.3	15	67	22	51	24	22	0	53	1.46
38165037--38165122	43	2.0	43	93	0	145	22	24	1	52	1.54
38167545--38167607	33	1.9	33	96	0	117	17	33	30	19	1.95
38167720--38167792	30	2.4	30	90	2	110	17	31	27	23	1.97
38175091--38175130	12	3.5	12	77	22	50	47	0	7	45	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38176950--38177007	20	2.8	21	75	14	57	48	1	0	50	1.11
38176954--38176996	22	1.9	22	85	4	59	51	2	0	46	1.13
38190420--38190463	20	2.2	20	100	0	88	36	18	9	36	1.82
38191806--38191845	20	2.1	19	95	4	71	35	0	7	57	1.27
38199407--38199451	20	2.2	20	88	0	63	35	6	6	51	1.55
38199423--38199879	227	2.0	224	89	2	702	31	14	11	42	1.81
38201880--38201915	18	2.0	18	89	10	56	63	5	5	25	1.38
38208263--38208306	21	2.1	21	100	0	88	31	27	4	36	1.77
38208494--38208563	35	2.0	35	100	0	140	37	11	11	40	1.77
38215533--38215636	41	2.5	41	84	0	136	22	29	16	31	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221