genome.fa.s26.2.7.7.80.10.50.1000.42.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Length:  64892201

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   

This is table  42  of  221  ( 26413 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11739373--11739434	18	3.2	20	78	17	69	29	0	0	70	0.87
11739373--11739442	20	3.7	19	80	16	74	28	0	0	71	0.86
11747266--11747352	29	2.9	29	91	8	131	31	2	0	66	1.04
11753683--11753718	18	2.1	18	94	5	65	16	33	38	11	1.84
11754043--11754087	23	1.9	24	86	4	65	20	2	51	26	1.59
11755667--11756673	507	2.0	507	90	1	1606	28	17	25	28	1.97
11758120--11758165	19	2.3	20	96	3	85	47	17	10	23	1.79
11762005--11762107	47	2.2	48	89	1	154	31	18	14	35	1.91
11767745--11767795	25	2.0	26	96	3	95	39	0	37	23	1.55
11769171--11769582	54	7.8	54	75	7	269	27	17	15	39	1.89
11769171--11769461	162	1.8	161	83	3	388	26	15	15	42	1.87
11769797--11769853	23	2.5	23	80	8	64	22	19	17	40	1.91
11772086--11772110	3	8.3	3	100	0	50	32	0	36	32	1.58
11775611--11775661	21	2.4	21	80	6	59	76	7	9	5	1.15
11777198--11777225	13	2.2	13	100	0	56	46	0	10	42	1.38
11784888--11785286	46	8.6	47	92	1	617	38	14	19	28	1.90
11784911--11785286	93	4.0	93	95	0	664	38	14	19	28	1.90
11784865--11785286	139	3.0	140	90	1	661	37	13	18	29	1.90
11786131--11786259	43	3.0	42	79	15	147	31	27	18	22	1.97
11792562--11792622	28	2.2	28	96	0	113	27	6	24	40	1.80
11798545--11798602	9	6.6	9	90	4	82	25	10	22	41	1.85
11798542--11798602	26	2.3	26	85	2	86	24	9	26	39	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11798549--11798601	17	3.1	17	88	2	70	24	11	24	39	1.88
11798762--11798786	12	2.1	12	100	0	50	16	24	36	24	1.94
11799566--11799597	4	7.8	4	93	6	55	75	0	25	0	0.81
11800729--11800785	20	3.0	18	82	10	69	45	0	29	24	1.53
11800742--11800796	27	2.0	27	86	6	76	45	0	27	27	1.54
11800733--11800795	19	3.3	20	79	14	71	44	0	28	26	1.55
11812931--11812967	15	2.4	16	86	13	51	2	10	2	83	0.84
11814473--11814529	24	2.4	24	87	0	87	42	31	17	8	1.80
11814512--11814578	24	2.8	24	71	8	64	31	38	17	11	1.87
11814542--11814608	30	2.2	30	86	0	89	34	38	19	7	1.80
11814572--11814656	24	3.5	24	76	6	91	34	36	22	7	1.81
11814614--11814666	3	17.7	3	92	0	61	39	33	24	1	1.66
11814494--11814662	78	2.2	78	81	9	188	34	36	20	8	1.84
11821352--11821403	21	2.5	21	77	0	68	51	21	5	21	1.68
11821938--11821995	16	3.8	15	85	14	75	13	22	24	39	1.90
11831852--11831897	18	2.6	18	92	0	74	34	26	10	28	1.90
11832948--11833018	25	2.9	24	85	10	83	42	2	0	54	1.14
11832948--11833018	24	3.0	23	84	14	83	42	2	0	54	1.14
11833338--11833685	42	8.3	43	81	6	340	31	30	16	21	1.95
11833332--11833657	85	3.9	82	81	8	331	31	30	16	21	1.95
11841328--11841360	7	4.4	8	85	14	52	42	33	0	24	1.55
11841669--11841817	7	20.7	7	71	9	50	46	32	2	18	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11841743--11841817	14	5.3	14	77	3	78	52	29	1	17	1.53
11841743--11841817	21	3.5	21	79	1	78	52	29	1	17	1.53
11841828--11841879	14	3.8	14	79	5	61	50	26	0	23	1.50
11842048--11842215	41	4.1	41	76	7	162	32	26	19	21	1.97
11842268--11842400	40	3.3	40	76	2	133	22	23	20	33	1.97
11842892--11842936	20	2.2	20	88	7	65	73	6	6	13	1.24
11842892--11842942	19	2.5	19	84	9	57	74	5	7	11	1.21
11844605--11844658	26	2.1	26	96	0	99	27	16	14	40	1.88
11848808--11848882	26	2.9	26	83	13	77	38	8	14	38	1.76
11857224--11857309	45	1.9	45	85	0	118	22	19	12	45	1.84
11861194--11861230	17	2.1	18	85	14	51	51	13	5	29	1.63
11865082--11865757	44	15.4	44	78	7	568	29	24	15	29	1.96
11865071--11865756	88	7.8	87	79	6	641	30	24	15	29	1.96
11865069--11865757	132	5.2	132	89	1	997	30	24	15	29	1.96
11868918--11869003	45	1.9	45	100	0	172	37	16	15	31	1.89
11877987--11878046	30	2.0	31	86	3	86	65	3	3	28	1.25
11878051--11878096	22	2.1	21	88	4	65	56	6	4	32	1.45
11887807--11887831	12	2.1	12	100	0	50	24	20	32	24	1.98
11895857--11896249	161	2.4	161	96	0	707	33	18	21	26	1.96
11901656--11901746	37	2.5	37	85	5	123	16	10	32	39	1.84
11904289--11904368	37	2.2	37	86	4	108	27	30	17	25	1.97
11904499--11904923	47	9.1	47	91	0	638	25	30	10	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11906515--11906539	13	1.9	13	100	0	50	32	16	20	32	1.94
11909714--11909739	13	2.0	13	100	0	52	38	7	15	38	1.76
11911630--11911680	19	2.5	20	81	9	68	37	0	11	50	1.39
11911640--11911687	19	2.8	17	84	9	53	41	0	10	47	1.37
11916651--11916694	23	1.9	23	85	0	61	45	20	13	20	1.85
11916679--11916875	47	4.2	47	89	4	202	40	16	16	25	1.90
11916715--11916887	23	7.4	24	75	4	174	42	14	18	24	1.88
11916715--11916887	47	3.7	47	95	0	301	42	14	18	24	1.88
11917727--11917856	43	3.0	42	78	16	158	30	28	17	23	1.97
11923278--11923460	51	3.6	49	77	6	197	30	27	18	24	1.98
11923263--11923457	101	1.9	101	87	6	279	29	26	17	26	1.98
11925953--11925997	23	2.0	23	81	0	54	48	0	2	48	1.13
11946773--11946818	23	2.0	23	83	8	58	6	13	2	78	1.04
11953759--11953795	15	2.3	17	86	9	51	37	0	10	51	1.37
11962450--11962555	46	2.3	46	82	8	126	59	0	37	1	1.15
11963069--11963109	20	2.0	20	85	4	55	29	0	2	68	1.03
11967576--11967610	14	2.5	14	90	0	52	34	22	5	37	1.78
11968836--11969124	62	4.7	61	88	4	397	48	9	6	35	1.61
11968860--11969097	123	1.9	123	92	3	399	47	9	5	36	1.61
11972495--11972538	20	2.2	20	88	4	63	6	22	6	63	1.43
11977438--11977468	16	1.9	16	100	0	62	29	0	0	70	0.87
11979813--11979916	49	2.1	49	90	0	163	31	7	11	49	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11981611--11981646	18	2.0	18	100	0	72	38	0	0	61	0.96
11981305--11981906	120	5.0	120	95	2	1079	42	0	4	51	1.27
11983110--11983138	3	10.0	3	92	7	51	34	31	0	34	1.58
11990562--11990751	65	2.9	64	88	1	281	36	21	8	34	1.83
11995045--11995075	16	1.9	16	93	0	53	38	0	12	48	1.42
11997764--11997884	63	1.9	63	87	1	179	28	5	32	33	1.81
11997764--11997902	64	2.2	63	83	3	163	30	5	32	31	1.81
11997764--11997919	64	2.5	64	80	11	153	30	6	33	30	1.83
12004332--12004424	7	13.3	7	76	12	66	47	0	20	32	1.51
12004335--12004386	21	2.5	21	88	11	81	57	0	11	30	1.34
12007340--12007400	30	2.0	30	100	0	122	22	13	16	47	1.81
12009235--12009296	31	2.0	31	100	0	124	32	19	3	45	1.66
12019306--12019491	54	3.4	55	81	8	175	6	49	4	38	1.51
12019356--12019432	24	3.0	24	67	20	64	2	51	2	42	1.29
12020970--12021003	15	2.3	15	89	0	50	8	8	47	35	1.66
12028287--12028315	12	2.3	13	94	5	51	82	17	0	0	0.66
12028287--12028316	13	2.3	13	94	0	51	83	16	0	0	0.65
12031834--12031941	54	2.0	54	100	0	216	29	18	12	38	1.88
12039798--12039830	14	2.4	14	94	0	57	24	0	3	72	0.98
12039806--12039844	20	2.0	20	89	0	60	25	2	2	69	1.14
12039857--12039899	22	2.0	21	82	17	52	37	2	2	58	1.24
12043501--12043525	12	2.1	12	100	0	50	52	8	16	24	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12045978--12046010	14	2.3	15	89	5	50	27	12	33	27	1.92
12047343--12047481	43	3.2	42	66	15	102	26	28	24	20	1.99
12047334--12047960	263	2.4	263	82	2	724	27	24	24	23	2.00
12047331--12047967	88	7.2	88	80	5	615	27	24	24	23	2.00
12047954--12048568	132	4.7	131	92	1	955	27	15	26	30	1.96
12047946--12048568	44	14.1	43	74	10	458	27	15	26	30	1.96
12047946--12048568	88	7.1	87	76	6	524	27	15	26	30	1.96
12049193--12049245	19	2.8	17	83	13	52	20	5	0	73	1.03
12049879--12049922	3	14.7	3	87	0	61	25	0	4	70	1.06
12049931--12049979	24	2.2	24	82	10	59	36	8	6	48	1.58

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221