genome.fa.s26.2.7.7.80.10.50.1000.207.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Length:  64892201

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   

This is table  207  of  221  ( 26413 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60858355--60858401	15	2.8	17	78	15	53	63	0	0	36	0.94
60861889--60861990	45	2.3	45	84	6	145	43	17	15	23	1.88
60862192--60862279	40	2.2	41	85	2	115	40	19	7	31	1.80
60863086--60863144	25	2.4	25	94	5	104	50	3	0	45	1.18
60863216--60863271	30	1.9	28	85	7	76	48	5	0	46	1.25
60865042--60865496	236	1.9	236	85	1	635	38	11	5	43	1.65
60868721--60868822	51	2.0	51	100	0	204	47	9	13	29	1.75
60869339--60869393	4	13.8	4	100	0	110	50	0	23	25	1.49
60869687--60869711	9	2.8	9	100	0	50	68	8	0	24	1.16
60871048--60871323	113	2.4	113	90	1	428	27	20	19	32	1.97
60871665--60871887	51	4.6	50	73	13	196	23	21	24	30	1.99
60871644--60871887	92	2.5	94	86	6	330	23	20	25	30	1.99
60871734--60871887	50	3.1	50	75	5	175	22	20	24	31	1.98
60871920--60872744	132	6.2	132	94	0	1436	28	25	17	29	1.97
60872783--60873194	89	4.6	89	90	0	581	23	23	23	29	1.99
60873433--60873490	24	2.4	24	79	0	71	20	17	20	41	1.90
60874501--60874533	14	2.3	15	89	5	50	24	33	15	27	1.95
60877286--60877337	19	2.7	20	82	5	63	46	11	17	25	1.81
60878745--60878948	106	1.9	106	86	4	286	37	18	15	28	1.91
60879104--60879232	70	1.9	68	85	7	181	34	17	16	31	1.92
60879713--60879747	8	4.4	8	92	0	61	48	0	14	37	1.44
60880035--60880059	9	2.8	9	100	0	50	68	8	0	24	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60886447--60886531	27	3.2	25	75	11	80	43	0	24	31	1.55
60886463--60886531	13	5.2	13	74	10	68	40	0	24	34	1.56
60886485--60886561	40	1.9	40	91	0	127	42	1	20	35	1.61
60890819--60890986	23	7.3	23	87	0	255	30	25	20	22	1.98
60892394--60892441	18	2.7	18	78	9	53	37	14	4	43	1.65
60892795--60892880	9	9.4	9	87	2	109	40	23	9	26	1.84
60892987--60893030	18	2.4	18	88	0	61	13	2	43	40	1.57
60899921--60899959	10	3.9	10	79	0	51	66	0	5	28	1.12
60902123--60902148	13	2.0	13	100	0	52	23	23	23	30	1.99
60905241--60905364	25	5.0	24	81	3	113	35	16	25	21	1.95
60905241--60905372	50	2.6	49	79	4	147	34	16	26	21	1.95
60907399--60907478	28	2.9	28	94	0	142	31	25	21	22	1.98
60907865--60907925	27	2.3	27	82	5	70	22	19	19	37	1.94
60907878--60908098	27	8.2	26	75	9	151	16	17	20	44	1.86
60907878--60908098	54	4.1	54	79	5	198	16	17	20	44	1.86
60907878--60908098	81	2.7	80	79	6	223	16	17	20	44	1.86
60911551--60911585	17	2.1	17	89	10	54	31	5	11	51	1.61
60913917--60913986	33	2.2	33	97	2	133	44	8	18	28	1.79
60914377--60914469	46	2.0	46	95	0	168	40	7	22	29	1.81
60916882--60917057	37	4.8	37	96	0	298	39	13	21	26	1.90
60917020--60917143	46	2.8	46	91	3	200	33	16	22	27	1.96
60920187--60920229	10	4.2	10	80	13	52	72	0	6	20	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60925509--60925575	5	13.6	5	95	3	109	55	0	0	44	0.99
60925509--60925603	34	2.8	34	82	6	104	56	0	1	42	1.06
60932637--60932661	11	2.3	11	100	0	50	60	0	0	40	0.97
60936828--60936913	42	2.0	42	93	0	145	27	2	17	52	1.57
60938770--60938823	22	2.5	22	76	11	56	27	1	1	68	1.10
60947969--60948009	21	2.0	21	90	0	64	19	29	21	29	1.98
60961930--60962895	152	6.3	151	87	5	1332	51	7	10	30	1.63
60962994--60963029	18	1.9	19	88	5	56	25	0	2	72	0.98
60963104--60963195	47	2.0	47	84	0	121	50	15	4	30	1.63
60978964--60979003	16	2.5	16	80	12	55	45	0	0	55	0.99
60978989--60979024	19	1.9	19	94	5	65	61	0	0	38	0.96
60980348--60980761	126	3.3	124	88	3	580	28	20	18	32	1.96
60990760--60990792	7	4.7	7	100	0	66	72	0	0	27	0.85
60993069--60993511	222	2.0	221	98	0	850	39	18	15	26	1.91
60995309--60996838	454	3.4	454	89	3	2200	24	21	22	30	1.99
60997233--60997278	20	2.3	20	80	0	56	45	2	2	50	1.26
60998150--60998225	31	2.5	30	75	12	75	39	3	5	51	1.43
60998637--60998688	16	3.1	16	72	22	52	36	0	5	57	1.23
61005323--61005482	39	4.2	39	90	4	229	16	45	20	18	1.86
61005332--61005479	77	1.9	75	89	5	226	16	43	19	20	1.88
61005473--61005522	24	2.1	24	85	7	66	16	40	28	16	1.89
61007541--61007578	18	2.0	20	90	10	62	68	0	0	31	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61007823--61007984	50	3.2	50	88	0	234	24	22	32	20	1.98
61010031--61010058	14	2.0	14	100	0	56	21	28	14	35	1.92
61011871--61011897	14	1.9	14	100	0	54	22	18	0	59	1.38
61014148--61014196	9	5.4	9	85	0	62	26	8	24	40	1.83
61014156--61014196	18	2.3	18	95	0	73	26	9	24	39	1.86
61019347--61019403	29	2.0	29	89	0	87	40	14	14	31	1.85
61021129--61021156	3	9.3	3	100	0	56	64	0	0	35	0.94
61025046--61025092	23	2.0	24	84	12	62	38	2	2	57	1.23
61027977--61028035	31	1.9	31	83	13	77	42	13	11	32	1.81
61028768--61028824	25	2.3	25	77	14	64	50	5	1	42	1.35
61029041--61029067	11	2.5	11	100	0	54	74	0	0	25	0.83
61031324--61031352	3	9.7	3	100	0	58	34	65	0	0	0.93
61059086--61059170	28	2.9	28	79	16	91	64	4	0	30	1.14
61059105--61059164	32	1.9	32	83	12	81	61	5	0	33	1.17
61060251--61060296	19	2.3	21	85	7	60	54	0	0	45	0.99
61062977--61063003	12	2.2	12	100	0	54	70	7	0	22	1.12
61062969--61063067	40	2.5	39	77	7	103	67	10	2	20	1.30
61090132--61090189	30	1.9	31	85	3	82	41	1	22	34	1.64
61090402--61090432	13	2.4	13	94	0	53	32	0	12	54	1.38
61090527--61090719	50	3.8	50	89	4	291	25	22	31	20	1.98
61097937--61097967	13	2.4	13	94	0	53	32	0	12	54	1.38
61098062--61098354	50	5.8	50	92	0	478	25	22	31	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61099914--61099943	14	2.1	14	93	0	51	30	13	26	30	1.94
61108534--61108577	24	1.9	24	90	9	74	36	0	2	61	1.09
61108765--61108806	16	2.6	16	88	0	57	40	7	2	50	1.43
61108765--61108832	22	3.4	21	69	23	56	42	4	1	51	1.31
61111078--61111107	14	2.1	14	93	0	51	30	13	26	30	1.94
61122246--61122272	12	2.2	12	100	0	54	51	14	7	25	1.68
61122939--61122980	3	14.0	3	100	0	84	33	0	33	33	1.58
61123248--61123287	21	2.0	21	90	5	64	45	10	0	45	1.37
61130901--61130950	18	2.8	17	84	6	55	46	2	2	50	1.24
61131628--61131670	9	4.6	9	83	16	52	25	0	0	74	0.82
61131618--61131672	11	5.5	10	81	16	53	27	0	3	69	1.05
61131657--61131699	20	2.2	20	86	0	59	32	0	4	62	1.15
61131642--61131691	23	2.2	22	85	3	64	32	0	2	66	1.03
61143823--61143981	42	3.8	42	91	0	264	27	12	16	44	1.83
61145370--61145426	29	2.0	28	86	3	78	43	1	8	45	1.45
61152541--61152585	22	2.0	22	86	0	63	28	15	15	40	1.88
61153037--61153100	26	2.5	26	77	10	85	43	4	12	39	1.63
61154877--61154907	15	2.1	15	100	0	62	19	6	25	48	1.72
61155044--61155108	19	3.4	19	78	4	85	32	4	3	60	1.33
61155043--61155119	39	2.0	39	84	5	102	32	5	5	57	1.43
61156201--61156266	26	2.7	24	78	17	73	56	9	7	27	1.58
61156201--61156279	26	3.2	26	72	24	71	56	7	7	27	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61156300--61156331	3	10.7	3	100	0	64	68	0	0	31	0.90
61157837--61158371	44	12.1	44	79	3	556	28	24	14	31	1.95
61157842--61158366	89	5.9	88	75	8	440	29	24	15	31	1.95
61157864--61158364	133	3.8	133	94	0	842	29	24	15	30	1.96
61157837--61158371	177	3.0	176	79	7	467	28	24	14	31	1.95
61160974--61161221	129	1.9	129	100	0	496	35	11	4	49	1.58
61168320--61168362	21	2.2	19	83	8	50	27	16	6	48	1.71
61171596--61171665	28	2.5	28	90	4	106	40	10	1	48	1.45
61171667--61171699	10	3.3	10	88	12	50	90	6	3	0	0.52
61171728--61171860	27	4.9	27	95	0	203	26	27	31	14	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221