genome.fa.s26.2.7.7.80.10.50.1000.154.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Length:  64892201

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   

This is table  154  of  221  ( 26413 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46683239--46683294	18	3.1	19	76	7	62	41	14	10	33	1.80
46683289--46683339	18	2.9	17	77	8	57	47	7	9	35	1.66
46683842--46683891	7	6.9	7	93	6	82	0	16	0	84	0.63
46683833--46683908	14	5.1	15	84	9	93	0	18	0	81	0.69
46683842--46683903	22	3.0	22	86	9	69	0	17	0	82	0.67
46683832--46683908	23	3.3	22	76	16	84	0	18	0	81	0.68
46684045--46684075	16	1.9	16	93	0	53	3	6	12	77	1.08
46684038--46684063	11	2.4	11	100	0	52	0	11	7	80	0.89
46684039--46684099	16	3.6	16	72	18	52	1	6	13	78	1.01
46684195--46684240	3	15.0	3	82	13	58	0	36	0	63	0.95
46684209--46684237	10	2.9	10	100	0	58	0	37	0	62	0.96
46684195--46684240	13	3.7	13	81	18	62	0	36	0	63	0.95
46684296--46684345	10	5.2	10	80	7	59	0	30	0	70	0.88
46684300--46684342	19	2.3	19	88	11	63	0	30	0	69	0.88
46684591--46684707	30	3.9	29	77	11	94	44	3	21	30	1.69
46684606--46684707	30	3.4	30	83	2	125	44	3	21	30	1.70
46684705--46684740	16	2.2	17	90	5	56	19	0	2	77	0.88
46684705--46684740	17	2.1	17	89	0	54	19	0	2	77	0.88
46684982--46685231	53	4.7	54	90	6	386	35	18	15	30	1.92
46685244--46685276	13	2.4	14	95	5	59	69	9	9	12	1.36
46685237--46685284	14	3.5	14	85	5	62	62	8	10	18	1.52
46685360--46688022	72	37.1	72	97	1	4951	33	18	16	31	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46685360--46688026	287	9.3	288	97	1	4909	33	18	16	31	1.93
46688952--46689064	46	2.5	45	78	5	113	13	25	15	45	1.83
46699918--46699964	21	2.3	19	80	20	51	34	6	8	51	1.58
46699943--46700354	17	23.3	17	69	17	128	44	9	12	33	1.74
46700114--46700388	17	15.4	17	71	9	138	45	10	12	31	1.75
46700134--46700215	22	4.1	20	80	13	80	43	7	8	40	1.63
46700134--46700215	21	4.1	20	80	11	89	43	7	8	40	1.63
46700333--46700388	18	3.1	18	74	5	58	41	16	10	32	1.82
46700383--46700433	18	2.9	17	77	8	57	47	7	9	35	1.66
46700927--46700976	7	6.4	8	88	9	52	0	20	0	80	0.72
46700929--46700972	7	5.9	7	89	10	61	0	18	0	81	0.68
46701280--46701316	14	2.8	13	91	4	56	0	35	0	64	0.94
46701271--46701315	21	2.1	22	87	4	65	0	31	0	68	0.89
46701372--46701421	10	5.2	10	80	7	59	0	30	0	70	0.88
46701376--46701418	19	2.3	19	88	11	63	0	30	0	69	0.88
46701665--46701781	30	4.0	29	80	6	128	46	3	19	30	1.67
46701779--46701814	16	2.2	17	90	5	56	19	0	2	77	0.88
46701779--46701814	17	2.1	17	89	0	54	19	0	2	77	0.88
46712780--46712845	32	2.1	31	81	15	75	25	16	9	48	1.76
46714019--46714085	11	5.8	11	73	15	55	76	1	20	1	0.95
46714020--46714085	34	1.9	34	84	9	89	77	1	19	1	0.93
46714016--46714095	21	3.6	21	79	16	72	75	1	21	2	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46714020--46714086	20	3.2	20	81	8	71	76	1	20	1	0.95
46717257--46717289	12	2.8	12	95	0	57	24	0	60	15	1.35
46717283--46717342	30	2.0	31	83	3	77	41	0	40	18	1.50
46717635--46717677	18	2.3	18	88	4	59	32	20	13	32	1.92
46718297--46718330	17	2.0	17	100	0	68	47	23	0	29	1.52
46719783--46719883	25	4.1	25	74	14	59	51	4	2	40	1.39
46722877--46722975	28	3.6	27	84	9	119	31	12	28	28	1.92
46728337--46728540	108	1.9	106	86	4	293	35	18	16	29	1.93
46729372--46729429	3	19.3	3	85	0	80	63	1	1	32	1.14
46730953--46731351	42	9.2	42	61	18	111	25	24	22	28	1.99
46730997--46731133	43	3.2	43	66	17	120	22	22	26	28	1.99
46730949--46731628	87	7.8	87	89	0	1054	25	23	21	29	1.99
46732858--46732892	13	2.6	13	90	4	52	11	20	0	68	1.20
46733272--46733311	6	6.7	6	86	11	55	15	2	12	70	1.28
46737361--46737564	108	1.9	106	90	4	329	35	20	16	27	1.93
46738397--46738454	3	19.3	3	89	0	89	62	3	0	34	1.12
46739166--46739190	13	1.9	13	100	0	50	64	8	4	24	1.38
46745965--46745994	12	2.5	12	94	0	51	26	23	40	10	1.86
46752274--46752528	125	2.0	125	99	0	501	40	14	18	27	1.89
46755224--46755265	2	21.0	2	100	0	84	0	50	0	50	1.00
46759880--46759948	29	2.3	29	82	5	84	27	13	13	46	1.79
46760379--46760423	23	2.0	23	82	8	56	68	2	4	24	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46766202--46766375	30	5.7	30	84	1	222	32	8	15	44	1.76
46766545--46766613	36	1.9	35	82	8	86	27	13	26	33	1.93
46767837--46767957	62	2.0	59	80	7	136	41	2	6	49	1.42
46770926--46771190	123	2.1	125	84	4	331	29	14	16	39	1.89
46771279--46771406	33	3.8	33	77	7	141	43	12	0	42	1.48
46771281--46771413	67	2.0	65	82	7	160	42	12	0	44	1.46
46782805--46782853	16	3.1	16	90	0	80	44	4	30	20	1.70
46788764--46788797	6	6.0	6	86	13	54	0	52	47	0	1.00
46788764--46788797	17	2.0	17	100	0	68	0	52	47	0	1.00
46788913--46788938	11	2.4	11	100	0	52	53	0	7	38	1.30
46788960--46788993	17	2.0	17	100	0	68	58	0	0	41	0.98
46788993--46789018	11	2.4	11	100	0	52	53	0	7	38	1.30
46788910--46789035	40	3.2	39	79	18	161	61	0	3	34	1.15
46790287--46790326	21	1.9	21	94	0	71	32	0	12	55	1.38
46794515--46794566	26	2.0	26	92	0	86	23	28	25	23	1.99
46794623--46794647	2	12.5	2	100	0	50	48	0	0	52	1.00
46801013--46801177	46	3.2	52	80	11	216	36	13	22	27	1.92
46801073--46801251	37	4.3	46	89	7	187	38	14	20	26	1.91
46801141--46801323	37	5.0	37	95	1	316	37	16	21	24	1.93
46805684--46805721	19	2.1	19	85	9	53	34	0	7	57	1.28
46808442--46808618	45	4.0	45	82	3	160	25	19	11	42	1.86
46815576--46815627	15	3.5	15	76	5	52	38	1	5	53	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46816195--46816271	29	2.7	29	83	2	102	36	10	18	35	1.85
46817417--46817487	36	2.0	36	91	0	115	28	19	23	28	1.99
46818413--46818454	20	2.2	19	83	12	50	64	2	4	28	1.26
46827629--46827708	42	1.9	43	80	12	96	51	16	3	28	1.61
46832454--46832478	13	1.9	13	100	0	50	56	0	4	40	1.18
46832504--46832542	20	1.9	21	89	5	62	33	5	2	58	1.33
46839441--46839479	17	2.2	18	86	4	53	38	5	2	53	1.37
46849139--46849228	47	1.9	47	100	0	180	31	20	12	36	1.89
46851294--46851383	42	2.1	42	93	0	153	26	28	24	20	1.99
46857464--46857507	18	2.6	17	82	10	54	47	11	0	40	1.39
46858283--46858316	17	2.0	17	88	0	50	64	2	11	20	1.39
46858650--46858698	22	2.3	20	75	6	53	61	6	4	28	1.38
46861748--46861799	17	3.2	15	75	19	50	42	0	0	57	0.98
46861743--46861799	15	3.5	15	73	17	51	45	1	0	52	1.11
46864226--46864277	22	2.5	20	79	11	59	26	26	19	26	1.99
46864235--46864277	22	2.0	22	90	0	68	25	25	20	27	1.99
46865846--46865884	12	3.2	12	81	0	51	74	2	7	15	1.15
46866385--46866429	23	2.0	23	86	0	63	60	15	6	17	1.56
46870921--46870950	7	4.3	7	95	0	51	50	0	30	20	1.49
46890290--46890332	22	1.9	23	90	4	70	18	9	32	39	1.83
46890423--46890492	18	3.9	17	80	15	70	74	0	2	22	0.95
46890423--46890486	17	3.9	17	80	15	64	73	0	3	23	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46890421--46890493	19	3.7	19	76	18	69	75	0	2	21	0.93
46890421--46890495	10	6.8	11	71	17	50	74	0	2	22	0.94
46896195--46896229	17	2.1	17	100	0	70	20	22	22	34	1.97
46897593--46897635	16	2.5	18	81	11	54	58	11	16	13	1.64
46914705--46914826	61	2.0	61	98	0	235	18	10	29	41	1.84
46917337--46917528	50	3.7	51	78	4	172	27	20	29	22	1.99
46917779--46917817	20	2.0	20	90	10	62	56	5	23	15	1.59
46922833--46922871	20	2.0	20	90	10	62	15	23	5	56	1.59
46923122--46923266	49	2.9	50	82	6	195	22	28	20	28	1.98
46925216--46925347	45	3.0	45	88	2	196	33	25	16	24	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221