genome.fa.s26.2.7.7.80.10.50.1000.122.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Length:  64892201

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   

This is table  122  of  221  ( 26413 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37470324--37470368	23	2.0	23	91	8	74	46	0	2	51	1.13
37470586--37470629	16	2.6	16	82	13	52	31	2	0	65	1.05
37470588--37470626	17	2.2	19	86	9	55	28	2	0	69	1.02
37470621--37470663	20	2.1	21	87	12	63	53	0	0	46	1.00
37471566--37471798	94	2.5	92	79	8	238	35	17	8	39	1.80
37471881--37472135	95	2.7	95	82	1	291	35	15	8	40	1.78
37472195--37472366	80	2.1	80	82	3	211	33	19	6	40	1.77
37473420--37473470	22	2.3	22	80	6	59	31	5	7	54	1.53
37475071--37475122	27	2.0	26	85	11	70	67	11	1	19	1.31
37476312--37476346	6	5.5	6	87	12	52	80	2	0	17	0.84
37477920--37477966	20	2.4	20	83	13	62	40	6	4	48	1.48
37477924--37477971	25	1.9	25	82	0	60	39	8	4	47	1.53
37485177--37485513	63	5.2	63	62	13	164	32	16	11	39	1.85
37485043--37485800	130	5.8	130	85	2	907	31	16	12	39	1.86
37485048--37485781	390	1.9	390	85	2	1010	32	16	12	38	1.86
37489144--37489172	14	2.0	15	93	6	51	3	20	0	75	0.94
37489252--37489399	73	2.0	73	92	2	244	43	7	18	30	1.78
37497976--37498043	31	2.2	31	78	0	73	44	11	11	32	1.77
37503724--37503803	5	16.0	5	97	0	151	38	1	20	40	1.60
37504563--37504761	66	3.0	65	85	3	256	49	13	24	12	1.76
37508758--37508818	27	2.3	27	97	0	113	40	4	13	40	1.65
37519934--37519981	19	2.6	19	83	3	62	37	2	14	45	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37532331--37532590	135	1.9	135	84	1	351	36	12	20	31	1.89
37533724--37533791	32	2.1	32	89	5	102	36	10	26	26	1.88
37537153--37537177	12	2.1	12	100	0	50	8	8	0	84	0.79
37538710--37538797	45	2.0	43	89	6	133	39	14	5	39	1.70
37568143--37568257	42	2.7	42	97	1	212	24	11	22	41	1.86
37599432--37599476	23	2.0	23	86	0	63	57	0	6	35	1.25
37603008--37603061	26	2.1	26	100	0	108	50	7	14	27	1.70
37603350--37603586	85	2.8	85	86	1	323	33	19	13	33	1.91
37615350--37615408	18	3.4	18	76	4	68	3	13	1	81	0.90
37615353--37615397	23	1.9	24	86	4	65	4	15	2	77	1.02
37615340--37615407	23	3.0	23	72	19	63	4	13	1	80	0.92
37616904--37616974	22	3.3	22	84	2	99	25	28	35	11	1.90
37626854--37626953	43	2.3	43	93	5	166	42	6	17	35	1.73
37632206--37632249	18	2.4	18	84	3	61	47	13	15	22	1.81
37636442--37636472	9	3.4	9	95	0	53	38	25	9	25	1.86
37636471--37636545	37	2.0	37	94	0	132	45	13	2	38	1.57
37636679--37636779	45	2.3	45	91	1	168	16	2	25	54	1.56
37636674--37636796	39	3.0	39	81	14	158	17	3	29	50	1.61
37642961--37643041	31	2.7	30	80	5	92	48	16	13	22	1.80
37645348--37645456	45	2.4	45	86	3	139	35	16	22	25	1.94
37645379--37645467	45	2.0	45	88	0	133	40	15	17	25	1.90
37651284--37651339	17	3.2	17	85	10	60	39	1	0	58	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37651288--37651339	19	2.8	19	82	11	63	38	1	0	59	1.08
37660428--37660462	16	2.1	17	89	10	54	77	0	11	11	1.00
37661638--37661681	15	2.9	16	83	10	56	65	0	0	34	0.93
37661639--37661700	21	2.9	21	82	2	61	66	0	0	33	0.92
37661617--37661700	38	2.3	37	84	10	102	64	0	1	34	1.02
37662397--37662439	21	2.1	21	87	8	63	65	0	11	23	1.25
37670730--37670900	87	2.0	87	96	0	315	28	21	9	39	1.85
37674902--37674936	8	4.5	8	89	7	54	17	0	0	82	0.66
37674905--37674936	15	2.1	15	94	0	55	15	0	0	84	0.63
37675691--37675887	102	1.9	102	97	0	376	45	12	10	32	1.75
37684041--37684074	12	2.7	13	86	9	52	47	5	0	47	1.26
37691372--37691440	27	2.5	28	74	4	70	28	17	30	23	1.97
37692970--37693003	12	2.8	12	86	0	50	5	8	11	73	1.24
37695389--37695546	35	4.5	35	76	3	120	27	24	18	30	1.98
37695395--37695527	70	1.9	70	84	0	176	29	21	16	32	1.95
37698819--37698863	23	2.0	23	87	8	67	40	8	17	33	1.81
37701034--37701099	28	2.4	28	92	5	107	0	28	1	69	0.97
37701034--37701100	7	9.6	7	73	26	54	0	28	1	70	0.96
37701034--37701103	14	5.0	14	80	16	83	0	28	1	70	0.96
37727380--37727428	21	2.3	21	89	0	80	44	24	6	24	1.76
37733780--37733809	12	2.4	12	94	5	51	63	0	36	0	0.95
37733981--37734120	59	2.3	60	81	8	167	26	2	18	52	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37734026--37734118	32	2.9	32	98	0	177	26	3	18	51	1.61
37735355--37735389	14	2.5	14	95	0	61	48	0	0	51	1.00
37738197--37738249	25	2.1	25	83	13	65	41	0	1	56	1.10
37743539--37743608	23	3.0	23	77	8	79	38	12	14	34	1.84
37744733--37744773	7	5.9	7	100	0	82	26	0	0	73	0.84
37757444--37757469	8	3.2	8	100	0	52	88	0	11	0	0.52
37758311--37758348	17	2.2	17	90	0	58	2	21	0	76	0.91
37758873--37758957	9	9.4	9	86	0	125	41	23	11	23	1.87
37758873--37758957	36	2.4	36	93	0	143	41	23	11	23	1.87
37759635--37759689	21	2.6	21	82	0	65	34	5	1	58	1.32
37759656--37759871	6	36.0	6	76	5	150	31	6	0	60	1.30
37771260--37771311	23	2.3	23	86	0	68	32	17	25	25	1.97
37774552--37774611	31	1.9	31	89	0	93	38	16	13	31	1.87
37775023--37775050	5	5.6	5	100	0	56	78	0	0	21	0.75
37775012--37775051	15	2.7	15	84	0	53	70	0	5	25	1.08
37776162--37776215	26	2.1	26	92	0	90	24	9	7	59	1.54
37790263--37790514	36	6.7	38	71	9	153	26	19	13	40	1.88
37790267--37790507	75	3.2	75	82	1	277	26	19	13	40	1.88
37790493--37790560	27	2.5	27	95	0	118	25	17	16	41	1.89
37790584--37791127	39	14.5	39	67	14	162	24	20	14	40	1.90
37790773--37791120	36	9.4	36	70	10	171	25	19	14	41	1.89
37790584--37791156	75	7.7	75	81	2	553	25	20	13	40	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37790608--37791114	224	2.3	224	81	3	529	25	20	13	41	1.89
37791220--37791303	23	3.6	23	71	10	71	30	19	13	36	1.89
37791801--37791845	15	3.0	15	80	0	54	48	8	2	40	1.47
37794281--37794341	18	3.4	18	76	0	68	13	40	3	42	1.60
37796467--37796496	4	7.5	4	92	0	51	46	23	3	26	1.68
37797489--37797556	35	1.9	35	88	5	102	45	11	8	33	1.72
37797950--37798013	31	2.1	31	81	0	74	37	17	21	23	1.94
37799565--37799616	19	2.7	20	79	11	63	65	3	0	30	1.10
37800237--37800300	30	2.1	31	94	2	112	32	0	0	67	0.91
37800393--37800423	15	2.0	16	93	6	55	25	0	6	67	1.14
37801382--37801406	7	3.6	7	100	0	50	28	0	12	60	1.32
37803537--37803883	125	2.8	126	89	2	547	34	21	14	29	1.93
37807043--37807172	69	1.9	69	83	0	170	34	16	22	26	1.95
37809561--37809795	43	5.5	43	77	2	204	39	19	15	25	1.91
37809631--37809801	86	2.0	86	85	0	234	39	18	15	26	1.90
37809561--37809793	129	1.8	128	81	6	292	39	19	15	25	1.91
37811837--37811898	25	2.5	25	97	0	115	53	25	20	0	1.46
37826825--37826878	24	2.2	25	77	9	58	29	12	12	44	1.80
37830561--37830654	30	3.1	30	92	1	152	27	24	6	41	1.79
37830571--37830648	15	5.2	15	73	11	70	28	21	7	42	1.80
37835194--37835287	30	3.1	30	93	1	152	26	24	6	42	1.78
37835204--37835281	15	5.2	15	68	11	61	26	21	7	43	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37837228--37837259	7	4.6	7	100	0	64	62	12	0	25	1.30
37838167--37838201	18	1.9	18	94	0	61	14	40	2	42	1.60
37838168--37838211	9	4.9	9	82	0	52	18	34	2	45	1.62
37841515--37841544	12	2.5	12	100	0	60	16	26	6	50	1.70
37843157--37843383	51	4.5	51	79	7	228	28	15	27	28	1.96
37843157--37843383	102	2.2	101	82	5	262	28	15	27	28	1.96
37843590--37843649	12	4.9	12	72	9	50	41	3	21	33	1.70
37848173--37848250	27	3.0	25	74	9	75	38	12	16	32	1.87
37850339--37850501	42	3.9	42	81	1	184	33	23	15	27	1.95
37868420--37868468	21	2.3	21	79	6	55	40	34	20	4	1.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221