genome.fa.s26.2.7.7.80.10.50.1000.153.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Length:  64892201

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   

This is table  153  of  221  ( 26413 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46401066--46401444	95	4.0	91	92	6	550	27	22	19	30	1.98
46404158--46404341	62	3.0	62	91	0	305	32	4	20	42	1.72
46406600--46406668	3	24.0	3	79	8	54	56	0	8	34	1.30
46406608--46406658	15	3.5	15	84	10	70	52	0	11	35	1.38
46407978--46408074	35	2.8	35	87	1	133	18	8	51	21	1.72
46425281--46425314	18	2.0	18	88	11	54	50	11	0	38	1.39
46432347--46432371	13	1.9	13	100	0	50	24	16	12	48	1.79
46433185--46433248	22	2.9	22	92	2	83	46	6	4	42	1.49
46433198--46433248	22	2.3	22	100	0	102	45	3	5	45	1.46
46433583--46433825	50	4.8	50	89	0	360	20	30	22	25	1.98
46434159--46434218	30	2.0	30	84	9	79	26	23	6	43	1.78
46435435--46435466	16	2.0	16	100	0	64	18	18	18	43	1.88
46439489--46439677	50	3.8	50	89	0	288	20	30	23	25	1.98
46440019--46440076	30	1.9	30	89	0	89	29	24	5	41	1.76
46444697--46444722	13	2.0	13	100	0	52	46	0	7	46	1.31
46445875--46445921	23	2.0	23	84	8	60	34	2	6	57	1.36
46446495--46446721	42	5.5	42	83	2	246	29	18	23	28	1.98
46450235--46450263	15	1.9	15	100	0	58	37	13	6	41	1.72
46454500--46454549	19	2.6	19	90	9	75	60	4	2	34	1.27
46459712--46459751	14	2.9	14	84	0	53	32	7	17	42	1.77
46459735--46459774	20	2.0	20	90	0	62	27	10	12	50	1.72
46459720--46459786	34	1.9	35	90	3	109	31	8	13	46	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46459714--46459790	14	5.0	15	71	20	52	32	9	15	42	1.78
46460158--46460196	18	2.2	18	100	0	78	46	10	0	43	1.37
46460832--46460856	13	1.9	13	100	0	50	56	8	8	28	1.57
46461102--46461128	13	2.1	13	100	0	54	55	14	7	22	1.64
46460723--46461400	272	2.5	272	95	0	1223	38	20	16	25	1.93
46466939--46466996	30	1.9	30	85	0	80	50	36	8	5	1.56
46466956--46467022	34	2.0	34	87	0	98	44	34	11	8	1.73
46469742--46469778	12	3.2	11	92	7	56	0	13	0	86	0.57
46469742--46469778	16	2.2	17	95	4	67	0	13	0	86	0.57
46471180--46471213	9	3.6	9	92	8	50	52	0	0	47	1.00
46471632--46471678	15	3.1	15	81	0	67	34	25	10	29	1.90
46471776--46471827	7	7.6	7	80	4	61	28	9	0	61	1.27
46471736--46471846	28	4.0	28	77	10	86	29	17	1	51	1.55
46471770--46471814	21	2.1	21	87	4	63	26	8	0	64	1.23
46471776--46471829	14	4.0	13	90	7	81	29	11	0	59	1.32
46474314--46474351	18	2.1	18	90	0	58	55	7	7	28	1.57
46476576--46476627	26	2.0	26	82	17	65	53	3	0	42	1.19
46482432--46482648	51	4.3	51	95	0	380	29	24	14	30	1.95
46487983--46488157	74	2.4	74	89	0	260	34	22	20	22	1.97
46496204--46496254	26	1.9	27	84	11	70	41	3	3	50	1.39
46506918--46506966	24	2.0	26	84	15	68	10	16	0	73	1.09
46508112--46508150	20	2.0	19	85	5	51	51	2	0	46	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46510026--46510327	151	2.0	151	98	0	586	32	18	14	35	1.91
46516963--46517008	21	2.2	21	88	7	67	26	19	34	19	1.96
46536842--46536890	16	2.9	16	77	11	53	61	2	2	34	1.19
46536840--46536891	17	3.1	16	74	17	52	63	1	1	32	1.16
46537085--46537129	22	2.0	23	91	8	74	62	0	2	35	1.08
46543978--46544172	66	2.9	67	81	4	189	34	9	27	27	1.88
46545803--46546106	108	2.8	108	84	4	337	37	14	21	25	1.92
46545997--46546328	87	3.8	87	81	2	256	39	15	21	24	1.91
46548677--46549002	103	3.2	103	86	6	444	35	15	17	32	1.90
46549265--46549307	17	2.4	18	80	11	52	74	0	4	20	1.00
46549331--46549355	13	1.9	13	100	0	50	76	0	0	24	0.80
46549731--46550075	110	3.2	108	91	3	538	31	18	15	34	1.92
46551374--46551402	15	1.9	15	100	0	58	41	0	0	58	0.98
46551482--46551511	12	2.5	12	94	0	51	43	3	0	53	1.17
46551478--46551518	14	3.1	14	79	13	50	41	7	0	51	1.30
46551878--46551920	15	2.9	15	80	13	52	13	2	4	79	1.00
46558343--46558724	50	7.6	50	72	0	278	27	22	25	24	2.00
46558343--46558701	100	3.6	100	89	0	547	28	22	25	24	1.99
46558842--46558932	45	2.0	45	80	4	103	32	19	20	26	1.97
46560359--46560425	32	2.1	31	83	2	80	32	8	4	53	1.52
46560413--46560471	16	3.8	16	75	8	59	38	8	1	50	1.43
46560418--46560469	14	3.6	14	75	10	50	38	9	1	50	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46567700--46568122	44	9.6	44	69	14	214	30	20	22	27	1.98
46567701--46568083	45	8.7	45	71	12	197	28	20	23	26	1.99
46567748--46568035	129	2.2	132	80	6	327	28	19	24	27	1.99
46567791--46568114	174	1.9	173	79	5	368	29	20	22	26	1.99
46568634--46568725	19	4.8	19	90	0	148	36	8	16	38	1.79
46568634--46568725	38	2.4	38	96	0	166	36	8	16	38	1.79
46573029--46573067	20	2.0	20	89	0	60	71	2	0	25	0.98
46573029--46573070	10	4.1	11	79	14	54	71	2	0	26	0.98
46573276--46573330	19	2.8	20	79	17	62	70	5	0	23	1.07
46573911--46573982	20	3.8	20	70	14	62	37	0	5	56	1.22
46575768--46575833	11	5.9	11	70	1	51	71	4	24	0	1.05
46577360--46577491	67	2.0	67	95	0	237	27	32	18	21	1.97
46577637--46577751	57	1.9	59	89	10	182	22	25	24	27	2.00
46580866--46580890	13	1.9	13	100	0	50	60	0	8	32	1.26
46591698--46591736	17	2.4	16	87	8	60	48	0	0	51	1.00
46592101--46592190	44	2.0	45	95	2	164	27	16	11	44	1.82
46599313--46599457	70	2.1	70	98	0	281	29	12	20	37	1.89
46606572--46606627	3	18.7	3	92	0	94	30	35	1	32	1.68
46613233--46613269	13	3.0	13	88	7	51	54	0	0	45	1.00
46613554--46613587	14	2.3	15	95	5	61	64	0	0	35	0.94
46615503--46615806	168	1.8	161	85	7	423	33	12	9	43	1.76
46615760--46615818	27	2.1	28	81	9	68	27	16	15	40	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46615942--46615979	16	2.2	18	90	9	62	73	0	0	26	0.83
46634980--46635009	12	2.5	12	94	0	51	16	26	0	56	1.40
46656702--46656846	41	3.6	41	83	0	175	28	20	27	23	1.99
46660907--46660971	32	2.0	32	96	0	121	12	16	24	46	1.82
46660947--46660987	21	2.0	21	100	0	82	19	19	26	34	1.96
46662496--46662533	20	1.9	20	94	0	67	47	13	7	31	1.71
46662483--46662547	34	1.9	33	87	9	96	46	13	6	33	1.69
46663466--46663516	9	5.8	9	90	4	77	23	9	29	37	1.87
46663466--46663515	17	2.9	17	84	3	73	24	10	30	36	1.88
46664209--46664249	21	1.9	22	90	5	66	63	2	4	29	1.28
46664956--46665372	228	1.8	229	83	5	558	27	23	20	28	1.99
46665707--46665747	13	3.1	14	86	6	50	21	7	24	46	1.77
46665915--46665985	7	10.1	7	77	6	63	16	1	36	45	1.57
46666129--46666167	15	2.5	16	84	16	55	61	0	2	35	1.10
46666851--46666893	17	2.4	19	84	7	63	32	44	2	20	1.65
46667238--46667346	6	18.2	6	100	0	218	33	0	16	50	1.45
46669519--46669686	20	8.6	20	71	13	118	47	6	4	41	1.50
46669530--46669720	57	3.3	57	87	2	258	47	6	4	41	1.50
46669760--46669866	37	3.1	35	75	22	118	45	11	2	40	1.54
46670738--46670784	21	2.2	21	92	0	76	38	19	40	2	1.63
46671184--46671354	43	3.9	44	80	11	192	28	19	22	29	1.98
46675921--46675967	21	2.4	18	75	24	51	53	8	2	36	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46675993--46676024	6	5.2	6	96	3	55	81	0	0	18	0.70
46676238--46676282	23	2.0	23	86	0	63	62	17	0	20	1.33
46676453--46676510	22	2.7	21	76	10	53	41	17	3	37	1.66
46676489--46676563	19	3.8	19	84	6	105	37	16	10	36	1.83
46679500--46679532	17	1.9	18	88	11	52	45	0	12	42	1.41
46682846--46683285	17	24.6	18	69	20	110	44	10	11	33	1.75
46682852--46682917	16	3.9	16	78	13	53	48	10	13	27	1.75
46682973--46683010	18	2.2	18	86	9	53	39	7	5	47	1.55
46683018--46683294	17	15.4	17	72	11	142	45	10	12	32	1.75
46683055--46683121	22	3.0	22	87	10	93	40	7	7	44	1.61

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221