genome.fa.s26.2.7.7.80.10.50.1000.114.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Length:  64892201

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   

This is table  114  of  221  ( 26413 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34938645--34938686	9	4.8	9	85	2	59	38	0	9	52	1.34
34938717--34938955	23	10.6	23	82	10	289	45	25	0	28	1.57
34938794--34938870	21	3.6	21	72	19	77	41	37	0	20	1.53
34938716--34938938	44	5.0	44	84	8	249	44	26	0	28	1.58
34941518--34941892	123	3.0	124	89	4	567	32	21	16	29	1.95
34943157--34943184	6	4.7	6	100	0	56	53	0	0	46	1.00
34951511--34951578	20	3.4	20	78	11	77	41	16	26	16	1.88
34962551--34962581	16	1.9	16	93	0	53	48	0	9	41	1.36
34966090--34966124	13	2.6	14	86	9	54	22	11	14	51	1.74
34967088--34967149	21	3.0	21	83	4	74	45	16	22	16	1.85
35000198--35000461	70	3.8	68	80	5	258	18	18	23	38	1.93
35000198--35000459	141	1.9	139	80	3	310	18	18	23	38	1.93
35021439--35021475	16	2.2	18	85	9	51	40	18	2	37	1.65
35028523--35028567	22	2.0	22	83	8	56	40	4	0	55	1.20
35040899--35040934	6	6.0	6	96	0	54	55	11	0	33	1.35
35046514--35046546	17	1.9	17	88	11	50	75	6	0	18	1.00
35048383--35048603	111	2.0	111	90	0	352	33	17	15	32	1.92
35049056--35049094	18	2.2	18	90	0	60	53	7	7	30	1.57
35049188--35049224	19	2.0	19	94	5	67	59	5	0	35	1.20
35049171--35049224	19	2.9	18	84	10	65	55	3	0	40	1.17
35049239--35049288	19	2.8	17	80	19	57	66	2	4	28	1.21
35053242--35053291	21	2.3	22	79	3	57	2	26	0	72	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35055789--35055844	30	2.0	29	83	13	73	55	0	8	35	1.31
35056189--35056251	20	3.0	20	72	6	54	58	1	4	34	1.29
35060030--35060237	43	4.8	42	81	6	220	25	31	18	25	1.98
35059985--35060194	86	2.5	83	79	8	208	23	27	21	27	1.99
35060437--35060473	19	1.9	19	94	0	65	59	2	10	27	1.44
35065999--35066168	9	20.2	9	74	16	150	35	0	17	46	1.53
35066012--35066148	16	8.3	16	75	18	113	32	0	17	49	1.47
35066004--35066172	25	6.8	23	85	8	176	34	0	17	47	1.47
35066004--35066172	50	3.4	48	86	4	214	34	0	17	47	1.47
35066176--35066213	20	1.9	20	88	0	58	63	2	0	34	1.09
35066176--35066226	25	2.1	24	89	10	77	62	3	0	33	1.13
35066470--35066511	22	1.9	22	95	0	75	38	0	14	47	1.44
35067407--35067446	12	3.3	12	85	0	53	55	12	7	25	1.63
35067396--35067457	24	2.7	24	76	14	67	51	14	8	25	1.69
35067910--35067955	24	2.0	24	86	4	67	28	2	43	26	1.66
35068271--35068326	16	3.5	16	76	7	60	25	7	3	64	1.35
35068993--35069100	22	5.0	22	71	9	78	35	42	0	22	1.54
35068999--35069100	7	14.1	7	72	6	60	34	44	0	21	1.53
35069132--35069164	14	2.3	15	94	5	59	36	33	0	30	1.58
35069542--35069891	41	8.5	41	83	1	423	28	28	24	18	1.98
35077416--35077455	21	1.9	21	84	0	53	45	17	12	25	1.83
35079126--35079254	43	3.0	42	89	2	195	19	16	34	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35079128--35079309	43	4.3	42	80	8	188	22	15	30	31	1.95
35079803--35079836	17	1.9	18	94	5	61	55	0	2	41	1.15
35079797--35079876	38	2.2	37	82	8	92	48	1	8	41	1.42
35080227--35080283	30	1.9	30	82	7	71	36	1	42	19	1.62
35089498--35089544	15	3.0	15	76	17	51	65	2	2	29	1.15
35106171--35106208	20	1.9	20	84	10	51	39	7	7	44	1.63
35107776--35107817	21	2.0	21	100	0	84	66	0	4	28	1.12
35108408--35108659	52	4.9	51	68	17	146	43	11	4	40	1.62
35108400--35108786	154	2.5	156	89	5	581	43	10	5	40	1.61
35109582--35109705	39	3.1	39	82	5	115	37	24	16	22	1.94
35109601--35110008	42	9.8	42	85	0	507	35	22	19	22	1.96
35121479--35121546	29	2.3	29	85	5	93	29	29	13	27	1.94
35121368--35121695	174	1.9	174	94	0	584	30	24	14	29	1.95
35121648--35121726	29	2.7	30	82	13	110	29	30	15	25	1.96
35132442--35132508	34	2.0	34	100	0	134	35	20	0	43	1.53
35133341--35133668	174	1.9	174	95	0	593	30	24	14	30	1.95
35133621--35133699	29	2.7	30	82	13	110	29	30	15	25	1.96
35138449--35138501	27	2.0	27	96	0	97	41	18	13	26	1.87
35138914--35138960	25	1.9	24	82	4	58	55	6	6	31	1.51
35139449--35139873	153	2.8	153	82	7	477	42	8	4	44	1.54
35139772--35139814	20	2.2	20	86	0	59	48	4	0	46	1.22
35141799--35141929	28	4.7	28	84	0	156	36	12	23	26	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35141799--35141929	56	2.4	56	88	1	183	36	12	23	26	1.91
35143512--35143545	17	2.0	17	88	0	50	41	0	0	58	0.98
35145304--35145344	18	2.3	18	100	0	82	24	29	17	29	1.97
35148481--35148509	15	1.9	15	100	0	58	13	0	37	48	1.43
35151412--35151475	25	2.6	25	100	0	128	17	35	12	34	1.87
35153901--35154011	52	2.1	54	94	3	199	44	1	9	45	1.46
35154001--35154052	15	3.6	15	80	12	56	44	0	1	53	1.11
35154188--35154298	45	2.6	43	79	10	122	32	28	5	33	1.80
35154278--35154345	16	4.2	16	90	0	100	35	33	0	30	1.58
35166070--35166504	44	9.9	44	87	0	575	30	20	24	24	1.98
35168667--35168887	111	2.0	111	92	0	370	33	17	16	33	1.92
35179311--35180072	387	2.0	386	95	0	1373	31	13	21	33	1.92
35180630--35180667	16	2.2	17	86	9	51	23	28	5	42	1.76
35180661--35180713	18	2.9	19	77	8	65	18	28	5	47	1.72
35184140--35184178	12	3.2	12	85	0	51	20	23	5	51	1.67
35184376--35184614	50	4.7	50	77	6	178	23	25	20	30	1.99
35186118--35186157	17	2.4	17	95	0	71	12	27	37	22	1.90
35186386--35186457	27	2.7	27	93	0	117	38	18	19	23	1.93
35188096--35188271	27	6.6	27	83	1	230	32	19	23	24	1.97
35188096--35188271	54	3.3	54	84	1	257	32	19	23	24	1.97
35188292--35188408	24	4.9	24	84	2	146	24	6	22	46	1.76
35188538--35188588	26	2.0	26	84	0	66	15	23	27	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35188594--35188685	32	2.9	32	85	0	139	22	16	19	41	1.90
35196468--35196507	20	2.1	18	86	9	53	25	0	10	65	1.24
35196472--35196522	25	2.0	25	81	7	59	27	1	9	60	1.39
35208056--35208106	18	2.8	18	85	8	68	37	21	0	41	1.54
35213887--35213940	18	3.0	18	75	5	56	35	20	3	40	1.70
35224059--35224116	26	2.2	26	90	6	91	36	6	15	41	1.74
35226168--35226293	45	2.8	45	82	0	153	38	17	20	23	1.93
35226265--35226427	46	3.6	45	82	2	209	49	13	16	20	1.79
35226265--35226475	45	4.6	45	79	1	197	48	14	18	18	1.81
35228816--35228870	1	55.0	1	81	0	65	0	0	9	90	0.44
35228819--35228872	8	7.1	8	83	12	78	0	0	11	88	0.50
35228816--35228868	14	3.7	14	90	5	88	0	0	9	90	0.45
35228819--35228872	22	2.4	22	93	3	90	0	0	11	88	0.50
35228816--35228869	15	3.7	15	85	5	83	0	0	9	90	0.45
35243022--35243064	22	2.0	22	90	0	68	39	23	20	16	1.92
35246359--35246391	15	2.1	16	88	5	50	42	3	21	33	1.68
35248990--35249030	19	2.2	19	100	0	82	60	0	17	21	1.35
35253444--35253488	22	2.0	22	83	8	56	40	4	0	55	1.20
35260649--35260758	41	2.7	41	88	0	166	30	20	25	23	1.99
35260732--35260784	26	2.0	26	92	0	88	16	20	33	28	1.95
35260758--35260906	42	3.6	40	76	10	129	22	15	25	36	1.94
35266075--35266270	41	4.7	41	74	9	137	26	18	24	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35266115--35266269	85	1.8	85	83	4	206	24	16	25	33	1.96
35268605--35268670	32	2.1	32	97	0	123	40	18	31	9	1.81
35269404--35269465	30	2.1	30	90	0	97	33	8	8	50	1.61
35269524--35269565	16	2.7	15	85	7	57	45	2	0	52	1.13
35270132--35270183	24	2.1	24	82	10	61	38	1	1	57	1.21
35274921--35275005	42	2.0	42	97	0	161	27	16	15	41	1.88
35282389--35282616	29	7.9	29	70	10	153	21	27	14	37	1.92
35282547--35282631	29	2.9	29	80	1	71	21	25	14	38	1.91
35285618--35285655	20	1.9	20	94	0	67	42	10	7	39	1.69
35292814--35292843	3	10.0	3	100	0	60	66	0	0	33	0.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221