genome.fa.s26.2.7.7.80.10.50.1000.211.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Length:  64892201

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   

This is table  211  of  221  ( 26413 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61781473--61781533	3	20.7	3	84	15	83	34	0	1	63	1.04
61782023--61782055	16	2.1	16	88	5	50	36	12	3	48	1.56
61784918--61784951	14	2.4	15	90	9	54	70	2	0	26	1.01
61784947--61785062	30	3.9	30	84	3	128	30	23	3	43	1.70
61784944--61785076	30	4.5	29	74	16	94	33	21	3	42	1.68
61785574--61785629	13	4.2	13	75	8	51	76	7	14	1	1.07
61786214--61786261	17	2.8	17	76	23	55	31	16	10	41	1.82
61786325--61786389	17	3.8	18	74	8	55	36	13	12	36	1.83
61786314--61786404	37	2.6	36	85	5	114	38	13	10	37	1.80
61786350--61786660	17	16.3	18	67	22	95	33	11	10	44	1.75
61786349--61786404	18	3.0	19	75	15	71	35	12	10	41	1.78
61786377--61786431	28	2.0	29	92	7	96	30	9	14	45	1.76
61786349--61786481	63	2.1	63	85	5	178	33	11	11	43	1.76
61786438--61786493	27	2.2	26	90	6	87	21	12	10	55	1.67
61786593--61786678	36	2.3	38	83	13	108	32	11	10	45	1.75
61786594--61786661	18	3.7	18	84	9	84	33	13	10	42	1.78
61806956--61806998	21	2.0	21	86	8	61	65	2	0	32	1.06
61806996--61807046	20	2.5	20	80	0	66	54	7	0	37	1.29
61809731--61809832	30	3.4	31	83	5	122	29	22	3	44	1.71
61810093--61810135	10	4.4	10	82	5	52	69	0	30	0	0.88
61810098--61810142	16	2.8	17	83	12	60	66	0	33	0	0.92
61810096--61810135	19	2.2	18	86	13	55	70	0	30	0	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61810197--61810268	3	24.0	3	78	16	62	69	0	30	0	0.89
61810200--61810228	10	2.9	10	100	0	58	62	0	37	0	0.96
61810197--61810242	13	3.7	13	81	18	62	63	0	36	0	0.95
61810392--61810436	23	2.0	23	100	0	90	68	4	26	0	1.08
61810555--61810611	10	5.7	9	75	20	51	82	1	15	0	0.75
61810554--61810601	15	3.2	16	82	11	66	83	0	16	0	0.65
61810567--61810609	22	2.0	22	86	9	61	81	2	16	0	0.79
61810554--61810610	16	3.7	15	79	11	62	82	1	15	0	0.75
61810942--61811456	17	29.8	18	70	14	261	33	11	11	43	1.77
61810953--61811006	16	3.2	16	75	14	56	35	14	9	40	1.78
61811043--61811126	38	2.3	38	83	4	109	36	15	9	38	1.80
61810999--61811201	74	2.8	73	80	8	209	33	12	10	42	1.77
61811077--61811183	54	1.9	55	83	7	137	36	13	11	39	1.80
61811448--61811486	20	2.0	20	84	0	51	48	7	0	43	1.31
61811477--61811514	16	2.3	17	81	4	51	36	15	10	36	1.82
61819770--61819975	54	3.5	54	67	17	160	28	14	20	36	1.92
61819693--61820011	123	2.6	122	93	2	539	27	14	21	36	1.92
61819995--61820029	17	2.0	18	88	5	54	17	11	5	65	1.43
61820013--61820645	72	8.7	73	93	1	1015	30	16	18	34	1.93
61820026--61820645	145	4.3	145	93	1	1037	31	16	18	34	1.93
61820593--61821248	54	12.0	54	89	7	1015	28	14	17	38	1.90
61820593--61821248	212	3.0	211	93	4	1051	28	14	17	38	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61821488--61821520	13	2.4	14	90	5	50	69	3	0	27	1.03
61821516--61821630	30	3.9	30	81	5	128	29	23	3	43	1.70
61821516--61821631	29	3.9	30	80	5	130	29	23	3	43	1.70
61821513--61821644	29	4.5	29	72	12	90	32	21	3	43	1.68
61821513--61821638	59	2.1	59	79	5	148	32	21	3	42	1.69
61822147--61822200	24	2.2	24	87	6	74	68	7	22	1	1.24
61822324--61822363	12	3.4	11	89	10	53	85	0	12	2	0.71
61822323--61822357	16	2.2	16	90	5	54	88	0	8	2	0.61
61822785--61822832	17	2.8	17	76	23	55	31	16	10	41	1.82
61822895--61822973	18	4.5	18	73	9	56	32	13	12	40	1.83
61822883--61822973	36	2.6	35	84	5	123	36	13	10	39	1.80
61822947--61822999	27	2.0	28	92	7	92	28	9	15	47	1.76
61822947--61823060	27	4.0	27	70	23	90	26	11	13	49	1.75
61822926--61823017	44	2.1	44	84	8	116	26	13	13	47	1.78
61822918--61823059	61	2.3	61	85	7	189	29	11	11	46	1.77
61822920--61823224	17	16.3	18	69	23	118	32	12	10	44	1.76
61823161--61823242	36	2.2	39	84	6	107	35	12	9	42	1.75
61824177--61824206	12	2.6	12	94	5	53	66	16	0	16	1.25
61826176--61826212	9	4.1	9	85	0	56	29	8	13	48	1.71
61828839--61828876	17	2.2	17	86	9	51	60	0	7	31	1.25
61829015--61829060	3	15.3	3	90	0	74	63	0	4	32	1.14
61829019--61829070	15	3.5	15	89	2	61	57	1	7	32	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61830576--61830758	44	4.1	44	85	1	249	30	23	15	31	1.95
61830772--61831218	44	10.2	44	64	18	153	29	23	18	28	1.98
61830754--61831226	132	3.6	132	92	1	763	29	23	18	28	1.98
61830754--61831133	88	4.3	88	66	11	204	28	24	18	28	1.98
61831270--61831410	45	3.2	45	64	17	123	25	19	20	34	1.96
61831278--61831446	87	1.9	87	95	0	302	24	20	23	31	1.98
61835681--61835706	13	2.0	13	100	0	52	46	15	7	30	1.74
61837470--61837507	17	2.2	17	86	9	51	60	0	7	31	1.25
61838799--61838829	16	1.9	16	93	0	53	51	9	3	35	1.51
61838848--61838912	27	2.2	28	80	17	71	63	4	3	29	1.30
61838851--61838912	31	2.0	31	84	6	81	61	4	3	30	1.33
61840644--61840804	43	3.8	43	79	4	157	31	21	16	29	1.96
61841960--61842008	26	1.9	26	88	12	75	57	10	18	14	1.65
61855064--61855112	25	2.0	25	92	8	82	28	2	8	61	1.36
61855066--61855122	25	2.3	25	84	6	71	28	3	5	63	1.33
61855161--61855248	3	30.0	3	71	13	58	36	1	3	59	1.22
61855239--61855286	23	2.1	22	85	11	62	33	8	4	54	1.50
61855343--61855447	47	2.3	47	80	9	128	40	13	1	44	1.54
61855531--61855557	4	6.8	4	100	0	54	22	0	0	77	0.76
61857768--61857797	6	5.0	6	91	0	51	33	46	0	20	1.51
61862718--61862753	19	1.9	18	94	5	63	86	2	5	5	0.79
61862884--61862937	24	2.4	23	84	9	67	24	40	31	3	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61863538--61863814	19	14.8	18	69	21	146	36	13	9	40	1.77
61863529--61863777	39	6.6	38	86	5	301	36	14	9	39	1.78
61863568--61863849	55	5.1	55	76	12	249	36	14	9	40	1.78
61863529--61863850	18	17.3	18	67	18	133	36	13	9	40	1.77
61871143--61871468	46	7.6	45	80	14	386	34	14	22	28	1.93
61871179--61871333	36	4.0	36	78	15	166	37	12	20	29	1.90
61871143--61871468	82	3.9	82	84	8	433	34	14	22	28	1.93
61871143--61871468	128	2.6	126	76	10	383	34	14	22	28	1.93
61873528--61874623	80	13.8	80	84	7	1360	29	16	18	35	1.93
61874834--61874970	30	4.6	30	82	8	145	32	21	4	41	1.73
61875324--61875371	3	16.0	3	95	0	87	64	0	33	2	1.05
61876206--61876448	19	13.2	18	72	18	139	37	12	7	42	1.71
61876206--61876448	37	6.6	36	80	11	212	37	12	7	42	1.71
61876206--61876448	38	6.6	37	82	9	225	37	12	7	42	1.71
61876215--61876457	35	6.6	35	76	14	172	36	11	7	44	1.71
61876925--61877019	26	3.5	26	76	11	84	62	3	6	28	1.35
61882362--61882412	23	2.2	23	80	13	61	39	0	1	58	1.09
61884269--61884373	29	3.6	29	79	5	113	32	18	3	45	1.67
61884637--61884696	21	3.1	20	77	13	63	63	0	36	0	0.95
61884638--61884693	20	2.7	21	80	5	69	66	0	33	0	0.92
61884649--61884698	18	2.6	19	79	17	59	60	0	40	0	0.97
61884893--61884934	19	2.1	19	91	8	66	78	7	14	0	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61885073--61885117	11	4.0	11	85	5	63	82	0	17	0	0.68
61885069--61885116	18	2.7	19	84	12	66	83	0	16	0	0.65
61885073--61885117	23	2.0	22	91	4	72	82	0	17	0	0.68
61885258--61885307	21	2.3	22	86	6	66	32	0	0	68	0.90
61885504--61885538	18	1.9	18	94	0	61	40	8	11	40	1.72
61885644--61885886	17	13.9	18	82	7	261	30	11	11	46	1.76
61885644--61885875	35	6.6	35	82	8	276	31	11	11	45	1.76
61888855--61888900	23	2.0	23	95	0	83	54	13	2	30	1.50
61891653--61891694	20	2.1	20	100	0	84	40	21	28	9	1.84
61895951--61895990	22	2.0	20	85	14	55	50	22	0	27	1.50

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221