genome.fa.s26.2.7.7.80.10.50.1000.37.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Length:  64892201

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   

This is table  37  of  221  ( 26413 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10179318--10179608	136	2.1	137	82	5	340	34	17	22	26	1.96
10188663--10188693	5	6.2	5	92	0	53	64	0	35	0	0.94
10192555--10192597	20	2.0	21	86	8	61	25	18	27	27	1.98
10204949--10205002	16	3.3	16	74	5	63	35	25	12	25	1.92
10204945--10205010	33	2.0	33	100	0	132	36	24	12	27	1.91
10206718--10206845	70	1.9	69	82	6	163	43	10	10	34	1.75
10209290--10209391	23	4.4	23	84	0	114	42	25	16	15	1.88
10209290--10209391	46	2.2	46	82	0	132	42	25	16	15	1.88
10209409--10209653	23	10.7	23	67	0	94	42	20	15	22	1.89
10209408--10209653	46	5.3	46	85	0	258	41	20	15	22	1.89
10210954--10211157	29	7.0	29	75	5	153	38	13	25	22	1.91
10210954--10211127	87	2.0	87	85	4	235	38	14	25	21	1.91
10211014--10211157	58	2.5	58	85	3	182	38	13	25	22	1.91
10216282--10216389	54	2.0	54	100	0	216	33	14	18	33	1.92
10227189--10227214	12	2.2	12	100	0	52	42	26	15	15	1.87
10227403--10227455	24	2.2	24	93	3	90	52	22	7	16	1.69
10228798--10228869	29	2.4	30	80	11	85	40	6	12	40	1.70
10228859--10228917	31	1.9	31	85	0	82	33	11	13	40	1.81
10229985--10230030	23	1.9	24	83	16	60	32	0	0	67	0.91
10230388--10230436	25	1.9	26	84	12	66	28	2	10	59	1.41
10236719--10237428	110	6.6	110	81	9	744	58	14	0	26	1.41
10237055--10237428	103	3.6	102	85	6	468	58	14	0	26	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10237857--10237906	24	2.1	25	88	7	77	62	0	2	36	1.07
10239280--10239365	39	2.3	37	82	13	97	55	3	0	40	1.17
10239338--10239387	11	4.7	11	85	4	68	58	2	2	38	1.21
10239296--10239387	22	4.6	20	77	14	84	57	4	1	36	1.26
10239338--10239395	22	2.7	21	82	10	73	58	1	1	37	1.18
10245984--10246020	14	2.4	17	86	13	53	48	0	0	51	1.00
10246170--10246220	14	3.6	14	74	7	50	68	0	13	17	1.21
10246209--10246242	16	2.1	16	88	5	50	76	5	14	2	1.09
10252537--10252573	14	2.4	17	86	13	53	48	0	0	51	1.00
10252723--10252773	14	3.6	14	74	7	50	68	0	13	17	1.21
10252762--10252795	16	2.1	16	88	5	50	76	5	14	2	1.09
10253891--10253986	39	2.5	39	80	6	108	20	23	28	27	1.99
10255465--10255504	14	2.8	15	85	14	50	42	17	12	27	1.85
10257910--10258013	54	1.9	54	84	0	136	36	16	25	21	1.94
10257916--10258028	27	4.2	27	74	0	100	36	17	25	20	1.94
10266438--10266512	33	2.4	30	87	10	91	22	18	9	49	1.76
10266450--10266515	33	2.0	33	100	0	132	27	18	9	45	1.79
10266463--10266520	18	3.4	18	64	22	52	25	18	8	46	1.78
10274970--10275125	83	1.9	83	93	0	267	29	13	24	32	1.93
10278787--10278882	38	2.5	38	96	0	174	34	19	21	23	1.97
10278787--10278897	38	2.9	37	86	5	152	36	18	19	25	1.95
10285049--10285146	38	2.6	37	81	3	115	39	1	8	51	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10305952--10306180	44	5.3	44	71	7	171	25	19	23	31	1.98
10305978--10306258	129	2.2	129	85	3	379	24	21	22	30	1.98
10306387--10306644	89	2.9	91	83	6	346	25	25	22	25	2.00
10306418--10306681	45	5.9	45	67	17	138	26	25	21	26	1.99
10319967--10320000	16	2.2	16	89	5	52	5	2	32	58	1.37
10320689--10320720	9	3.4	10	87	12	50	65	0	0	34	0.93
10321124--10321218	17	5.6	17	68	18	54	41	2	4	52	1.32
10321193--10321308	58	2.0	58	88	6	171	41	1	4	52	1.31
10326427--10326459	10	3.2	10	91	8	57	12	18	12	57	1.64
10331259--10331323	16	4.4	16	67	25	52	20	26	1	52	1.55
10331243--10331328	43	2.0	43	93	0	145	23	24	1	51	1.56
10331263--10331301	15	2.6	14	80	11	51	23	23	0	53	1.46
10332451--10332490	19	2.1	19	86	9	55	2	25	0	72	0.97
10332532--10332582	19	2.6	20	84	3	59	43	5	1	49	1.38
10339140--10339290	49	3.0	51	80	2	162	26	14	23	35	1.94
10345119--10345386	27	10.0	27	77	3	188	28	25	21	25	1.99
10345121--10345386	81	3.3	80	81	3	282	28	25	21	25	1.99
10345907--10346022	38	3.0	38	81	3	117	33	29	11	25	1.91
10347912--10347944	3	11.0	3	100	0	66	33	0	0	66	0.92
10348577--10348771	99	2.0	99	95	0	354	39	18	3	38	1.67
10348607--10348759	45	3.2	45	65	21	121	37	18	3	39	1.69
10350968--10350992	11	2.3	11	100	0	50	44	8	12	36	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10364255--10364307	23	2.3	23	86	0	79	43	15	9	32	1.78
10365138--10365239	41	2.5	41	80	4	118	32	28	18	20	1.96
10372265--10372406	40	3.5	40	88	2	187	32	26	18	22	1.97
10376252--10376452	27	7.4	27	80	2	168	36	13	23	25	1.92
10380558--10380868	45	6.8	45	87	2	435	45	16	17	20	1.85
10380557--10380868	137	2.3	137	89	1	457	45	16	17	20	1.85
10380558--10380867	91	3.4	90	90	2	460	45	16	17	20	1.85
10380559--10380868	46	6.8	45	87	2	433	45	16	17	20	1.85
10381235--10381265	13	2.4	13	94	0	53	41	6	9	41	1.63
10386755--10386803	25	2.0	25	95	0	89	20	10	20	48	1.78
10388938--10388977	19	2.1	19	95	0	71	45	5	5	45	1.47
10393669--10394081	132	3.1	131	88	0	610	25	25	19	30	1.98
10395288--10395326	18	2.2	17	86	13	53	30	0	20	48	1.50
10395552--10395650	23	4.3	23	82	7	130	23	18	26	32	1.97
10397647--10397875	44	5.2	43	68	13	133	25	26	22	26	2.00
10397644--10397875	88	2.6	89	89	2	369	25	25	22	25	2.00
10397976--10398090	44	2.6	44	90	0	167	30	20	20	28	1.98
10398190--10398315	42	2.9	43	81	6	148	27	21	17	33	1.96
10404724--10404753	15	1.9	16	93	6	53	63	10	0	26	1.26
10405534--10405576	23	1.9	23	90	4	70	44	13	4	37	1.65
10406308--10406402	46	2.0	47	93	2	165	44	9	7	38	1.65
10414238--10414302	30	2.2	30	83	5	78	40	6	10	43	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10417398--10417422	9	2.8	9	100	0	50	88	0	0	12	0.53
10422097--10422286	50	3.7	50	80	4	182	29	22	24	23	1.99
10423791--10423821	13	2.4	13	100	0	62	32	25	6	35	1.82
10425304--10425440	38	3.6	38	85	2	150	30	25	22	21	1.99
10427376--10427414	20	1.9	21	85	15	55	48	7	12	30	1.69
10431353--10431398	19	2.2	21	77	11	51	45	6	8	39	1.61
10438696--10438921	111	2.0	111	95	0	407	23	23	15	37	1.93
10443039--10443086	17	2.8	17	72	12	53	66	2	12	18	1.33
10453221--10453309	30	3.0	30	88	8	137	30	22	22	24	1.99
10453218--10453304	28	3.0	28	90	6	138	31	22	22	22	1.99
10453412--10453492	26	3.1	26	85	7	119	34	22	20	22	1.97
10453662--10454392	27	27.2	26	78	7	510	20	18	20	40	1.92
10453666--10454392	107	6.8	108	79	7	624	20	18	20	40	1.92
10456839--10456871	17	1.9	17	93	0	57	30	24	0	45	1.53
10459239--10459299	20	3.3	20	65	25	62	59	1	6	32	1.33
10459234--10459305	34	2.1	34	97	0	135	54	1	6	37	1.36
10459636--10459707	2	36.0	2	100	0	144	0	50	0	50	1.00
10464429--10464479	22	2.3	22	93	0	84	41	17	7	33	1.79
10485039--10485126	29	3.0	29	86	11	126	30	22	21	25	1.99
10485036--10485121	28	3.0	27	88	9	127	31	23	22	23	1.98
10485229--10485308	26	3.1	26	82	10	110	33	22	21	22	1.97
10485477--10486197	53	13.6	53	75	11	462	21	18	19	40	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10485477--10486197	27	27.2	27	80	6	543	21	18	19	40	1.92
10488611--10488643	17	1.9	17	93	0	57	30	24	0	45	1.53
10490995--10491064	33	2.1	33	92	5	115	54	1	7	37	1.37
10491020--10491058	19	2.0	19	85	5	51	61	2	5	30	1.31
10491376--10491436	2	32.5	2	84	12	85	0	44	0	55	0.99
10491374--10491437	21	3.0	22	93	6	114	0	43	0	56	0.99
10496135--10496185	22	2.3	22	93	0	84	41	17	7	33	1.79
10499817--10499898	31	2.8	29	75	17	87	34	10	13	41	1.79
10500029--10500097	30	2.3	30	85	9	97	55	8	1	34	1.40
10500044--10500120	29	2.6	29	79	6	82	53	10	0	36	1.35

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221