genome.fa.s26.2.7.7.80.10.50.1000.61.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Length:  64892201

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   

This is table  61  of  221  ( 26413 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17649512--17649583	26	2.6	27	81	14	69	18	2	2	76	1.03
17649518--17649607	16	5.5	16	74	17	69	16	3	4	75	1.10
17662268--17662467	50	3.9	50	78	7	179	28	20	27	24	1.99
17669854--17670096	50	4.7	52	78	7	228	26	20	28	24	1.99
17670016--17670135	49	2.4	49	83	4	143	31	18	24	25	1.97
17670456--17670486	16	1.9	16	100	0	62	25	12	12	48	1.77
17681609--17681647	20	2.0	20	85	10	53	35	2	0	61	1.10
17683212--17683300	38	2.3	38	84	0	106	31	16	14	37	1.89
17684944--17684997	24	2.2	24	87	6	74	38	1	0	59	1.08
17684962--17685018	24	2.4	24	84	0	69	38	7	0	54	1.28
17685875--17685922	21	2.2	22	88	3	71	52	2	0	45	1.12
17685898--17685943	18	2.6	18	89	3	67	45	0	4	50	1.21
17686297--17686339	22	1.9	23	90	4	70	48	2	0	48	1.14
17687313--17687350	11	3.5	11	82	13	51	0	18	2	78	0.86
17687874--17688015	62	2.3	62	93	2	241	21	22	30	25	1.99
17687874--17688037	62	2.6	62	89	1	195	23	22	29	25	1.99
17692858--17693080	23	9.6	23	76	5	189	24	16	17	41	1.89
17692848--17692985	47	2.9	47	86	2	188	25	17	17	39	1.91
17692848--17692919	24	3.0	24	83	2	101	23	18	16	41	1.89
17692905--17693096	69	2.7	70	88	2	278	24	14	19	41	1.89
17700626--17700953	70	4.7	70	82	6	242	24	16	16	42	1.88
17700626--17700955	47	7.0	47	73	9	262	24	16	16	42	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17700683--17700952	23	11.6	23	76	7	204	24	16	17	41	1.89
17700963--17701010	24	2.0	24	84	4	62	41	10	10	37	1.74
17705439--17705671	63	3.7	63	81	4	222	25	17	27	29	1.97
17707021--17707138	37	3.2	37	81	4	141	37	19	13	29	1.90
17708728--17708782	25	2.2	25	83	3	67	16	27	23	32	1.96
17714833--17714884	24	2.2	24	89	0	77	19	25	21	34	1.96
17716822--17716886	32	2.0	32	96	0	121	20	18	16	44	1.87
17717157--17717238	43	1.9	43	89	0	128	21	31	29	17	1.96
17724527--17724589	31	2.0	31	93	0	108	17	11	28	42	1.83
17725688--17725824	58	2.4	58	80	4	143	32	10	16	40	1.83
17725817--17726602	71	11.1	70	78	3	428	26	17	21	34	1.95
17725871--17726551	71	9.6	71	77	5	540	27	17	21	33	1.96
17725822--17726625	213	3.8	208	76	9	680	26	16	22	34	1.95
17735532--17735585	29	1.9	29	85	7	76	48	3	9	38	1.53
17740500--17740525	12	2.2	12	100	0	52	7	15	30	46	1.74
17740514--17740626	40	2.8	41	71	10	99	37	20	22	20	1.95
17740608--17740665	27	2.1	27	96	0	107	50	31	12	6	1.66
17740685--17741007	41	7.9	41	92	0	511	24	21	25	28	1.99
17741385--17741416	14	2.2	15	94	5	57	31	0	31	37	1.58
17741436--17741489	14	3.9	14	80	0	54	25	0	40	33	1.56
17741491--17741664	82	2.1	82	80	3	197	26	1	25	47	1.59
17741516--17741675	82	2.0	82	88	2	241	25	1	28	45	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17742074--17742107	16	2.1	16	88	5	50	70	2	2	23	1.15
17742344--17742503	75	2.1	77	89	5	245	44	15	10	30	1.79
17742371--17742518	75	2.0	75	86	2	208	44	15	10	29	1.79
17745601--17745715	53	2.2	53	98	0	221	24	20	13	41	1.88
17746686--17746823	43	3.2	43	94	0	240	19	19	34	26	1.96
17747657--17747728	31	2.3	31	79	11	76	61	2	1	34	1.19
17749351--17749621	43	6.3	43	77	6	255	33	24	16	26	1.96
17749351--17749621	86	3.2	86	84	4	307	33	24	16	26	1.96
17762823--17762910	42	2.1	41	81	6	97	31	22	15	29	1.95
17763073--17763121	19	2.5	19	90	3	71	14	2	8	75	1.12
17763461--17763513	7	7.4	7	81	12	63	33	45	0	20	1.52
17763461--17763513	14	3.7	15	87	7	74	33	45	0	20	1.52
17763557--17763640	28	3.0	28	81	6	80	44	32	0	23	1.54
17763591--17763706	7	16.4	7	68	12	58	48	25	1	25	1.61
17763591--17763644	14	3.8	14	79	13	65	51	24	0	24	1.48
17764124--17764334	40	5.3	40	81	3	237	27	19	20	32	1.97
17764125--17764334	80	2.6	80	89	0	303	27	19	20	32	1.97
17777358--17777427	20	3.5	19	65	16	52	35	21	35	7	1.81
17777290--17777414	60	2.1	60	84	0	160	37	14	32	15	1.87
17778964--17779042	37	2.1	37	88	4	115	25	30	18	25	1.98
17779161--17779711	47	11.7	47	95	0	949	29	28	8	33	1.87
17779229--17779863	47	14.1	40	82	12	253	30	28	8	33	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17779683--17779738	27	2.1	27	96	0	103	37	28	0	33	1.58
17779637--17779785	74	2.0	74	98	0	289	32	27	5	34	1.80
17779589--17779832	121	2.0	121	97	0	461	31	27	6	34	1.83
17779710--17779864	47	3.3	47	96	0	283	30	28	7	32	1.85
17797260--17797343	43	2.0	43	92	0	141	48	2	22	26	1.62
17800782--17800811	15	2.0	15	93	0	51	70	0	23	6	1.11
17806636--17806814	30	5.9	30	80	2	198	25	26	13	34	1.94
17806650--17806830	60	3.0	60	85	1	218	25	25	12	36	1.91
17806636--17806810	91	1.9	91	89	2	271	25	26	14	33	1.94
17808543--17808754	40	5.3	41	80	5	238	24	21	27	26	1.99
17808547--17808754	80	2.6	79	89	0	299	24	21	28	25	1.99
17810107--17810212	30	3.5	30	82	0	140	28	29	9	33	1.88
17813289--17813315	3	9.0	3	100	0	54	66	0	0	33	0.92
17813966--17814317	43	8.2	43	77	9	265	26	28	19	25	1.98
17814088--17814298	85	2.5	84	77	7	203	26	31	16	26	1.97
17814674--17814734	21	2.9	21	82	0	77	3	44	18	34	1.66
17814742--17814884	66	2.2	66	86	5	200	13	24	18	42	1.87
17820296--17820339	16	2.8	16	78	0	52	34	0	15	50	1.45
17820469--17821265	31	26.4	31	77	13	658	39	2	10	47	1.52
17820489--17821267	9	73.6	10	62	28	64	39	2	10	47	1.51
17820545--17820614	22	3.3	21	69	18	56	38	2	11	47	1.55
17820610--17820654	22	2.0	22	95	0	81	42	0	11	46	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17820592--17821132	56	9.1	56	87	7	584	40	2	10	46	1.51
17820666--17820710	22	2.0	22	95	0	81	42	0	11	46	1.39
17820386--17821235	175	4.7	178	84	10	911	39	2	10	46	1.53
17820785--17820829	22	2.0	22	95	0	81	42	0	11	46	1.39
17820841--17820885	22	2.0	22	95	0	81	42	0	11	46	1.39
17821074--17821122	13	3.7	13	79	15	64	34	0	12	53	1.39
17821111--17821155	22	2.1	21	95	4	81	42	0	11	46	1.39
17821117--17821170	22	2.3	22	87	9	72	40	1	11	46	1.50
17821035--17821263	113	2.0	116	90	5	367	38	2	10	48	1.52
17821176--17821263	22	4.2	21	66	24	51	37	1	12	48	1.48
17824107--17824175	35	2.0	36	86	11	99	37	0	7	55	1.28
17825437--17825463	14	1.9	14	100	0	54	44	14	3	37	1.63
17825734--17825768	15	2.3	15	90	0	52	40	40	0	20	1.52
17825767--17825798	16	1.9	17	93	6	57	40	21	0	37	1.54
17825852--17825915	24	2.7	24	77	15	69	50	3	3	43	1.33
17825868--17825923	25	2.2	26	78	18	64	50	1	5	42	1.35
17826270--17826610	41	8.4	41	80	4	181	36	24	22	16	1.94
17826313--17826610	82	3.7	81	79	5	291	36	24	23	15	1.94
17826354--17826610	120	2.1	122	83	3	313	35	25	23	15	1.94
17831652--17831728	38	2.0	38	100	0	154	25	5	37	31	1.78
17833202--17833269	17	3.9	17	69	16	59	10	33	4	51	1.56
17833187--17833258	36	2.0	36	100	0	144	13	30	5	50	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17833575--17833757	9	19.2	9	67	14	75	61	1	4	31	1.27
17833593--17833688	29	3.3	30	81	13	96	63	1	2	33	1.13
17833574--17833620	19	2.4	20	85	7	69	59	0	4	36	1.17
17833655--17833691	19	1.9	19	88	0	56	64	0	5	29	1.15
17833645--17833753	38	2.9	39	77	9	95	66	1	6	25	1.26
17833923--17834016	19	4.8	21	81	15	71	27	1	2	69	1.07
17833925--17834006	19	4.3	19	87	6	94	26	1	2	69	1.08
17833937--17834063	10	13.4	10	76	14	92	28	0	1	70	0.97
17833923--17834063	19	7.4	18	71	10	70	27	0	2	69	1.05
17834168--17834403	89	2.6	90	84	7	286	36	9	18	35	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221