genome.fa.s26.2.7.7.80.10.50.1000.107.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D13
Parameters: 2 7 7 80 10 50 1000
Length:  64892201

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   

This is table  107  of  221  ( 26413 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32875433--32875459	12	2.2	12	100	0	54	33	7	11	48	1.67
32884225--32884261	18	2.1	18	94	0	65	54	13	5	27	1.61
32890205--32890254	11	4.4	12	80	19	63	24	34	0	42	1.55
32890204--32890254	23	2.3	22	81	18	61	23	33	0	43	1.54
32890220--32890317	51	1.9	51	83	4	126	26	25	2	45	1.64
32892427--32892475	21	2.3	21	75	0	53	32	30	28	8	1.86
32895825--32896247	125	3.4	125	84	4	600	30	21	18	30	1.97
32896853--32896919	20	3.2	21	83	8	84	59	5	2	31	1.36
32896853--32896919	21	3.2	21	79	8	75	59	5	2	31	1.36
32896883--32896937	21	2.7	21	83	8	60	63	3	0	32	1.12
32901335--32901460	62	2.0	62	87	0	180	26	15	13	44	1.84
32902172--32902235	30	2.1	31	91	2	103	34	0	0	65	0.93
32903955--32903989	18	1.9	18	88	0	52	25	34	8	31	1.86
32904248--32904303	24	2.3	24	84	0	76	42	30	25	1	1.65
32904509--32905028	57	9.1	57	92	1	778	49	22	0	27	1.53
32904535--32904973	9	46.3	10	63	30	116	50	22	0	26	1.52
32904509--32905028	142	3.7	142	91	2	769	49	22	0	27	1.53
32904516--32905025	28	18.0	26	86	6	291	50	22	0	27	1.52
32905040--32905064	10	2.5	10	100	0	50	44	8	0	48	1.32
32910472--32910667	51	3.8	51	91	1	259	20	29	29	20	1.98
32915446--32915502	30	1.9	30	82	13	73	47	3	0	49	1.18
32916116--32916155	8	5.2	8	87	6	57	40	0	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32916084--32916140	28	2.0	29	89	3	89	42	0	1	56	1.10
32916116--32916155	15	2.7	15	84	11	55	40	0	0	60	0.97
32916097--32916161	22	3.0	22	77	2	78	43	0	0	56	0.99
32916723--32916761	19	2.0	20	85	5	53	58	2	0	38	1.12
32916850--32916909	26	2.4	25	81	10	68	5	56	6	31	1.47
32916899--32916950	22	2.4	22	83	9	70	5	53	5	34	1.49
32919525--32919567	15	2.6	17	82	10	54	62	6	30	0	1.21
32923641--32923665	7	3.6	7	100	0	50	28	0	12	60	1.32
32924783--32924830	25	1.9	25	100	0	96	50	0	10	39	1.37
32924849--32924896	25	1.9	25	95	0	87	43	0	14	41	1.45
32924899--32924935	9	4.2	9	96	3	67	29	0	10	59	1.31
32924761--32924918	66	2.3	67	83	4	228	43	0	11	45	1.40
32924966--32926033	23	47.7	23	81	8	1091	47	25	0	27	1.53
32924996--32925992	45	22.3	44	80	10	897	47	25	0	26	1.53
32924966--32926033	112	9.5	112	82	8	1007	47	25	0	27	1.53
32926100--32926396	54	5.2	54	65	15	179	41	8	5	44	1.59
32926039--32926344	54	5.2	60	65	16	194	39	8	7	44	1.63
32926039--32926396	115	3.1	115	95	1	637	40	8	6	44	1.62
32935159--32935219	9	6.8	9	96	0	95	39	27	9	22	1.86
32936219--32936323	54	1.9	54	84	0	138	21	27	23	26	1.99
32958639--32958704	33	2.0	33	100	0	132	12	27	18	42	1.85
32960216--32960275	18	3.4	18	64	13	52	43	6	10	40	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32960603--32961345	120	6.2	120	98	0	1432	44	2	5	48	1.37
32960814--32960848	18	2.0	17	88	5	52	45	0	0	54	0.99
32960934--32960968	18	2.0	17	88	5	52	45	0	0	54	0.99
32961054--32961088	18	2.0	17	88	5	52	45	0	0	54	0.99
32961294--32961328	18	2.0	17	88	5	52	45	0	0	54	0.99
32961564--32961632	16	4.2	16	92	3	120	36	37	1	24	1.65
32961564--32961632	33	2.1	32	94	2	120	36	37	1	24	1.65
32964491--32964609	23	5.2	23	81	0	157	31	21	21	25	1.98
32964498--32964609	46	2.4	46	90	0	179	32	23	20	24	1.98
32971443--32971493	18	2.6	19	75	9	50	47	0	3	49	1.20
32978432--32978555	42	3.0	42	86	4	135	29	26	16	27	1.97
32980903--32980956	24	2.2	24	83	0	63	18	20	40	20	1.91
32983287--32983349	33	1.9	33	83	6	83	28	20	1	49	1.58
32983544--32983690	61	2.4	61	98	1	285	56	8	4	29	1.51
32983588--32983681	28	3.2	28	62	24	66	55	9	4	30	1.51
32984493--32984529	18	2.1	18	89	0	56	56	0	0	43	0.99
32986061--32986103	16	2.5	17	85	14	54	60	9	4	25	1.47
32987079--32987182	21	5.0	21	82	6	117	13	23	19	44	1.86
33006660--33006714	20	2.8	20	78	13	60	67	1	3	27	1.17
33007542--33007669	31	4.2	31	72	9	104	34	13	10	41	1.79
33008736--33008792	17	3.0	18	76	20	62	61	5	22	10	1.48
33010040--33010369	165	2.0	165	98	0	633	31	19	11	37	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33012341--33012378	20	2.0	20	89	5	60	47	10	10	31	1.72
33012480--33012522	22	2.0	22	90	9	70	18	25	23	32	1.97
33013047--33013103	28	2.0	28	100	0	114	47	3	3	45	1.37
33014054--33014086	11	3.0	11	87	12	50	72	0	0	27	0.85
33017446--33017528	26	3.2	26	81	10	80	78	2	1	18	0.93
33017476--33017527	19	2.7	19	74	14	61	82	3	0	13	0.80
33017446--33017498	8	6.4	8	87	8	70	81	0	1	16	0.79
33017470--33017528	6	10.0	6	75	14	52	81	3	0	15	0.82
33017776--33017821	17	2.7	18	83	16	62	65	2	0	32	1.05
33018527--33018598	36	2.0	36	83	5	92	31	1	0	66	1.00
33018545--33018615	30	2.4	29	74	4	72	38	2	0	59	1.12
33039540--33039587	16	2.9	17	84	9	64	83	4	4	8	0.90
33053308--33053343	15	2.3	15	90	4	54	50	0	0	50	1.00
33053471--33053500	9	3.4	9	95	4	53	73	0	0	26	0.84
33053512--33053549	20	1.9	19	89	5	58	71	0	2	26	1.00
33058481--33058569	40	2.2	40	78	5	101	28	11	39	21	1.87
33058536--33058627	14	6.6	14	67	20	50	29	13	35	21	1.91
33059851--33059957	56	1.9	55	84	1	142	15	45	12	26	1.81
33066281--33066327	8	5.9	8	78	16	53	63	0	0	36	0.94
33069769--33069809	21	2.0	21	90	0	64	19	29	21	29	1.98
33090990--33091023	3	11.0	3	93	6	59	32	0	0	67	0.91
33090991--33091024	16	2.1	16	100	0	68	29	0	0	70	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33095229--33095270	3	14.0	3	100	0	84	33	0	0	66	0.92
33096718--33096748	3	10.3	3	100	0	62	32	0	0	67	0.91
33100960--33100986	7	3.9	7	100	0	54	85	14	0	0	0.61
33101963--33102123	43	3.8	43	86	1	216	27	31	19	21	1.98
33102508--33102547	21	1.9	21	100	0	80	5	40	20	35	1.74
33102556--33102685	66	2.0	66	86	3	181	18	24	16	40	1.90
33108002--33108289	9	33.7	9	67	16	112	29	4	19	46	1.69
33108037--33108184	32	4.5	32	73	11	111	27	3	20	48	1.65
33107995--33108173	25	7.2	25	71	9	116	27	3	20	48	1.67
33108011--33108105	16	6.4	16	72	16	78	27	4	18	49	1.66
33108200--33108289	25	3.6	25	78	3	83	28	4	21	45	1.71
33108298--33108408	20	5.8	20	74	12	106	41	4	5	48	1.46
33108289--33108397	56	1.9	58	88	5	170	43	3	6	46	1.47
33111214--33111278	14	4.4	15	73	13	55	38	43	0	18	1.50
33111223--33111293	22	3.2	22	81	0	88	38	42	0	19	1.52
33111798--33111953	41	3.8	41	90	1	242	26	29	25	18	1.98
33111989--33112063	39	1.9	38	86	2	105	21	25	18	34	1.96
33112429--33112470	22	1.9	22	85	0	57	47	11	11	28	1.76
33113333--33113375	23	1.9	22	85	4	59	18	13	27	39	1.89
33117083--33117129	19	2.4	19	82	10	60	36	0	4	59	1.17
33120922--33120972	18	2.8	18	84	0	66	45	0	3	50	1.20
33126301--33126405	38	2.8	38	89	0	156	39	22	17	20	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33126341--33126425	19	4.6	19	72	8	77	41	22	12	23	1.88
33126392--33126426	17	2.1	17	100	0	70	42	22	11	22	1.85
33126410--33126557	58	2.6	57	84	1	170	33	23	22	20	1.97
33127908--33127967	11	5.5	11	75	13	54	65	1	0	33	1.03
33128971--33129021	17	3.0	17	82	5	59	72	0	17	9	1.11
33129095--33129143	21	2.3	22	82	10	57	34	0	2	63	1.06
33130466--33130533	30	2.3	31	82	7	79	42	5	5	45	1.52
33130901--33130940	17	2.3	17	95	4	71	60	0	35	5	1.19
33133232--33133286	20	2.7	20	82	2	65	63	7	1	27	1.31
33133254--33133291	20	1.9	20	94	0	67	63	5	2	28	1.30

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221