genome.fa.s14.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Length:  64473564

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   

This is table  10  of  213  ( 25468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2840190--2840305	9	12.7	9	71	11	76	30	2	0	67	1.04
2849648--2849725	39	2.0	40	94	2	140	43	26	5	24	1.75
2851406--2851572	90	1.9	90	82	5	212	32	21	16	28	1.95
2851991--2852020	15	2.0	15	93	0	51	43	26	30	0	1.55
2868020--2868049	16	1.9	15	93	6	51	0	13	0	86	0.57
2868413--2868477	33	2.0	33	96	0	121	33	10	18	36	1.86
2873459--2873497	18	2.2	18	90	9	62	71	2	0	25	0.98
2873698--2873733	15	2.4	15	85	0	54	30	25	11	33	1.90
2877553--2877582	15	1.9	16	93	6	53	10	53	33	3	1.51
2877604--2877662	30	1.9	30	89	3	91	59	0	1	38	1.08
2877650--2877685	7	5.0	7	86	6	54	86	0	0	13	0.58
2877650--2877683	15	2.2	15	94	5	59	88	0	0	11	0.52
2883032--2883064	10	3.0	11	86	13	50	45	0	3	51	1.16
2883834--2883883	23	2.2	24	78	10	59	60	6	2	32	1.32
2883840--2883885	23	2.0	23	87	4	67	60	6	2	30	1.34
2892569--2892602	6	5.7	6	96	0	59	0	64	0	35	0.94
2895471--2895512	20	2.1	20	100	0	84	50	0	0	50	1.00
2895740--2895781	21	2.0	21	100	0	84	28	4	38	28	1.77
2902964--2903006	16	2.7	15	82	10	50	30	2	0	67	1.03
2904460--2904592	40	3.4	39	84	7	171	24	17	24	33	1.96
2906006--2906070	32	2.1	32	97	2	123	47	12	9	30	1.72
2911634--2911824	98	1.9	98	93	0	328	36	24	10	27	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2912896--2912987	19	4.8	19	89	0	130	35	15	8	40	1.78
2912873--2912987	38	2.9	38	83	5	140	38	14	7	39	1.76
2913216--2914530	132	10.0	132	91	1	2035	30	23	17	28	1.97
2915780--2915821	6	7.0	6	89	10	68	0	0	14	85	0.59
2915780--2915820	13	3.3	13	93	6	68	0	0	12	87	0.53
2915779--2915820	19	2.3	18	95	4	75	0	0	11	88	0.53
2920076--2920215	37	3.8	37	95	0	235	40	12	20	27	1.88
2920179--2920299	46	2.7	44	87	7	174	34	15	21	28	1.94
2927730--2927869	37	3.8	37	95	0	235	40	12	20	27	1.88
2927833--2927954	46	2.7	44	87	6	174	34	15	21	28	1.94
2929825--2930019	98	2.0	98	94	0	345	35	25	11	27	1.90
2931084--2931175	19	4.8	19	93	0	148	35	14	10	39	1.81
2931061--2931175	38	2.9	38	87	5	149	38	13	9	38	1.78
2932446--2932556	40	2.8	40	87	1	152	34	22	23	19	1.97
2932619--2933032	41	10.1	41	88	2	591	21	20	29	28	1.98
2933250--2933368	7	16.4	7	70	14	55	20	0	30	48	1.55
2933322--2933347	8	3.2	8	100	0	52	11	0	23	65	1.25
2938348--2938415	16	4.2	16	94	0	118	38	33	0	27	1.57
2942286--2942372	43	2.0	43	88	0	129	33	11	10	44	1.74
2942544--2942595	22	2.3	22	83	6	59	48	5	0	46	1.26
2942630--2942852	43	5.2	43	94	0	383	19	17	31	30	1.95
2954347--2954371	9	2.8	9	100	0	50	24	44	0	32	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2959794--2959833	20	2.0	20	90	4	64	35	2	2	60	1.24
2960588--2960625	20	1.9	19	89	5	58	42	0	2	55	1.14
2960592--2960631	20	2.0	20	85	0	53	47	0	2	50	1.14
2960890--2960969	42	1.9	42	82	5	99	27	18	23	30	1.98
2961521--2961563	3	14.3	3	100	0	86	67	0	0	32	0.91
2965123--2965173	19	2.7	19	79	8	50	78	1	9	9	1.04
2967782--2967826	17	2.6	17	89	0	63	31	24	20	24	1.98
2971811--2971843	15	2.3	15	90	10	52	60	0	0	39	0.97
2978752--2978829	38	2.1	38	100	0	156	43	10	5	41	1.61
2983873--2983912	21	1.9	21	85	10	55	35	7	17	40	1.78
2988443--2988502	31	1.9	31	93	0	102	35	26	11	26	1.91
2988707--2988888	41	4.4	42	86	5	230	20	28	21	29	1.98
2992624--2992679	3	18.0	3	81	17	62	30	1	1	66	1.12
2992621--2992687	15	4.6	14	75	24	59	28	1	2	67	1.14
3001310--3001418	51	2.1	51	98	0	209	30	11	15	43	1.81
3004913--3004957	6	7.5	6	100	0	90	51	15	0	33	1.44
3008931--3008958	13	2.2	13	100	0	56	32	17	0	50	1.47
3013292--3013332	5	8.2	5	97	0	64	39	34	0	26	1.57
3013407--3013436	5	6.0	5	100	0	60	40	40	0	20	1.52
3014954--3015018	20	3.2	20	69	16	51	38	7	24	29	1.83
3014964--3015030	22	3.1	22	72	20	61	38	8	26	25	1.85
3017323--3017357	17	2.1	17	94	0	61	22	17	14	45	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3017921--3017948	7	4.0	7	100	0	56	71	0	0	28	0.86
3027451--3027509	16	3.8	16	76	10	52	55	3	3	37	1.33
3039885--3039947	27	2.3	27	83	5	74	20	28	30	20	1.98
3040449--3040538	27	3.3	27	93	3	146	20	32	30	17	1.95
3040559--3040638	27	2.9	27	75	12	81	22	2	10	65	1.35
3045084--3045129	22	2.1	22	95	0	83	41	15	13	30	1.85
3050424--3050449	7	3.7	7	100	0	52	73	0	0	26	0.84
3050723--3050782	27	2.2	26	80	8	66	31	20	30	18	1.96
3050732--3050788	27	2.1	27	90	0	87	33	22	26	17	1.96
3051296--3051355	27	2.2	27	93	0	102	16	30	21	31	1.96
3051404--3051458	28	2.0	28	85	3	76	40	0	9	50	1.34
3054573--3054635	31	2.1	30	85	8	83	38	4	15	41	1.69
3081342--3081431	43	2.1	43	89	2	137	32	8	13	45	1.74
3082133--3082157	12	2.1	12	100	0	50	92	0	8	0	0.40
3085842--3085924	9	9.4	9	75	17	68	66	1	0	32	1.00
3085842--3085924	18	4.8	17	78	11	80	66	1	0	32	1.00
3087050--3087081	12	2.7	12	95	0	55	28	12	15	43	1.83
3098514--3098564	16	3.2	16	97	0	93	52	13	11	21	1.72
3099483--3099516	16	2.1	17	94	5	61	23	11	0	64	1.26
3100191--3100221	15	2.1	15	100	0	62	67	0	12	19	1.22
3105902--3105946	23	2.0	22	83	12	56	44	0	2	53	1.13
3105923--3106077	8	19.9	8	69	22	50	32	4	2	60	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3105960--3106027	15	4.9	15	83	16	85	29	7	0	63	1.21
3105921--3106040	20	6.4	20	70	24	59	33	5	0	60	1.27
3105922--3106012	28	3.1	28	69	19	51	31	6	1	60	1.29
3106015--3106077	28	2.2	29	85	5	92	31	1	4	61	1.26
3106037--3106064	11	2.5	11	100	0	56	28	0	7	64	1.20
3106066--3106103	17	2.3	16	95	4	67	39	0	10	50	1.37
3106118--3106188	33	2.2	33	87	5	101	52	0	4	43	1.20
3111068--3111096	12	2.4	12	100	0	58	34	17	0	48	1.47
3111858--3111907	25	2.0	25	100	0	100	28	8	0	64	1.22
3111858--3111900	15	3.2	15	69	30	51	27	6	0	65	1.18
3111862--3111915	25	2.3	23	84	12	67	35	7	0	57	1.27
3113614--3113722	51	2.1	51	98	0	209	43	15	11	30	1.81
3127989--3128046	29	2.0	29	100	0	116	31	13	17	37	1.89
3129204--3129231	14	2.0	14	100	0	56	35	21	7	35	1.81
3129775--3129820	23	2.0	23	100	0	92	39	13	13	34	1.83
3134155--3134211	21	2.7	21	91	8	89	0	15	15	68	1.22
3135196--3135220	11	2.3	11	100	0	50	28	0	8	64	1.22
3135813--3135852	21	1.9	21	89	0	62	57	0	12	30	1.36
3135977--3136005	14	2.1	14	100	0	58	51	13	0	34	1.42
3137686--3137725	19	2.1	19	90	0	62	52	2	15	30	1.55
3139217--3139249	16	2.1	16	94	0	57	39	12	9	39	1.74
3142512--3142569	29	2.0	29	89	0	89	32	18	6	41	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3144934--3144962	14	2.1	14	100	0	58	27	13	6	51	1.66
3149125--3149193	21	3.3	21	87	2	95	11	24	8	55	1.64
3151553--3151646	18	5.4	18	92	3	131	28	9	25	36	1.87
3159897--3159924	14	2.0	14	100	0	56	14	14	0	71	1.15
3159921--3159994	6	13.2	6	78	18	72	33	1	17	47	1.56
3159922--3159998	11	7.5	11	79	15	94	33	1	18	46	1.57
3159916--3159994	30	2.6	30	83	13	99	32	2	16	48	1.60
3159936--3159997	5	12.0	5	76	17	56	33	1	17	46	1.58
3159922--3159998	20	3.8	21	83	16	108	33	1	18	46	1.57
3176066--3176090	12	2.1	12	100	0	50	36	16	0	48	1.46

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213