genome.fa.s14.2.7.7.80.10.50.1000.207.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Length:  64473564

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   

This is table  207  of  213  ( 25468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61962532--61962568	19	1.9	19	100	0	74	43	2	0	54	1.14
61962590--61962767	86	2.1	87	87	7	256	33	6	20	39	1.77
61962590--61962790	86	2.3	86	84	9	241	34	5	19	39	1.76
61969814--61969961	77	1.9	76	81	6	174	28	12	16	42	1.84
61973189--61973223	18	1.9	18	88	0	52	40	17	20	22	1.92
61974493--61974532	3	13.3	3	84	10	55	2	2	62	32	1.22
61986549--61986578	15	2.0	15	100	0	60	46	6	0	46	1.29
61993626--61993663	17	2.2	19	86	13	55	21	0	0	78	0.74
62001973--62002037	30	2.2	30	94	0	112	29	29	3	38	1.72
62003791--62003832	18	2.3	18	87	0	57	23	26	7	42	1.80
62007267--62007784	126	4.1	126	87	3	751	29	16	17	36	1.92
62007267--62007784	250	2.1	251	88	3	776	29	16	17	36	1.92
62007846--62007957	34	3.4	33	80	6	127	45	14	0	39	1.51
62008007--62008072	21	3.1	21	66	0	60	48	22	0	28	1.51
62008063--62008101	15	2.6	15	87	0	51	56	33	0	10	1.33
62007993--62008083	42	2.1	42	84	6	121	47	27	1	24	1.59
62013223--62013251	11	2.6	11	100	0	58	72	0	6	20	1.07
62013245--62013318	20	3.8	18	75	18	69	63	2	5	28	1.30
62013833--62013878	4	11.5	4	95	0	83	26	2	23	47	1.63
62014082--62014126	11	4.1	11	79	0	54	31	4	0	64	1.13
62014162--62014205	21	2.0	21	86	4	61	31	6	2	59	1.36
62016094--62016132	20	1.9	21	84	5	53	53	7	2	35	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62021732--62021797	31	2.1	31	88	5	98	30	3	9	57	1.45
62021733--62021805	31	2.4	30	84	10	96	31	2	8	57	1.42
62031428--62032005	286	2.0	285	94	0	1014	35	11	17	34	1.87
62032451--62032964	249	2.1	249	95	0	929	36	10	18	34	1.86
62032784--62033569	336	2.3	336	96	0	1466	35	10	20	33	1.87
62033570--62034173	278	2.2	273	90	4	931	35	12	18	33	1.88
62033918--62034629	335	2.1	335	92	1	1158	35	10	20	32	1.88
62035260--62035323	9	7.2	9	76	15	55	56	1	3	39	1.25
62036185--62036232	12	4.0	12	76	10	53	41	18	14	25	1.88
62036184--62036230	24	2.0	24	87	8	69	44	19	14	21	1.86
62036298--62036389	40	2.3	38	83	9	112	36	20	19	22	1.95
62036315--62036409	39	2.4	40	86	6	124	42	21	16	20	1.90
62036445--62036603	82	1.9	82	86	5	223	23	21	28	26	1.99
62036449--62036587	41	3.4	41	90	5	210	21	21	27	29	1.99
62036994--62037063	22	3.2	21	80	9	70	24	1	40	34	1.64
62036997--62037064	14	4.7	14	72	16	50	26	1	38	33	1.66
62037328--62037378	23	2.2	23	86	10	68	15	1	47	35	1.57
62036880--62037792	299	3.0	300	85	6	1047	29	2	26	40	1.70
62037564--62037607	14	3.1	14	90	6	70	27	0	38	34	1.57
62038066--62038584	150	3.4	149	87	7	731	44	11	13	31	1.78
62038515--62038552	20	1.9	20	88	0	58	71	2	0	26	1.00
62038066--62038584	156	3.4	149	87	6	729	44	11	13	31	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62039775--62040068	43	6.8	43	85	3	324	24	20	30	24	1.99
62039775--62040068	86	3.4	86	86	3	369	24	20	30	24	1.99
62040109--62040138	12	2.5	12	100	0	60	0	20	40	40	1.52
62040443--62040496	20	2.7	19	76	18	56	42	1	1	53	1.22
62046074--62046105	15	2.1	15	100	0	64	53	15	25	6	1.65
62049357--62049399	18	2.4	18	80	7	52	41	2	2	53	1.26
62055411--62055462	3	17.3	3	81	15	63	65	3	0	30	1.10
62058280--62058525	42	5.8	42	87	2	350	33	21	21	23	1.97
62058280--62058524	128	1.9	128	92	1	411	33	20	22	23	1.97
62058280--62058525	86	2.9	84	87	2	375	33	21	21	23	1.97
62058282--62058605	42	7.7	41	83	5	209	31	20	20	26	1.98
62058494--62058609	41	2.7	43	89	2	173	27	20	18	32	1.97
62058939--62059009	21	3.4	21	80	0	79	2	45	18	33	1.64
62062018--62062050	11	3.0	11	95	0	57	27	30	9	33	1.88
62063256--62063456	84	2.4	84	92	0	321	29	17	19	32	1.95
62064873--62064934	20	3.1	19	80	11	70	53	3	0	43	1.17
62065111--62065469	112	3.2	112	91	2	560	27	28	18	25	1.98
62066122--62066183	20	3.1	19	80	11	70	53	3	0	43	1.17
62066360--62067055	112	6.2	112	93	1	1137	26	29	18	25	1.98
62067003--62067119	40	2.9	40	94	0	198	22	29	16	31	1.95
62069257--62069323	34	1.9	35	84	3	91	44	11	11	31	1.78
62072977--62073049	35	2.1	35	87	7	105	43	20	12	23	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62082433--62082509	24	3.2	25	78	10	88	18	25	22	33	1.96
62083505--62083544	10	3.9	10	83	3	53	40	0	12	47	1.41
62083505--62083544	20	2.0	20	90	0	62	40	0	12	47	1.41
62089297--62089326	15	1.9	16	93	6	53	53	13	0	33	1.40
62089816--62089869	21	2.6	20	74	14	56	51	7	3	37	1.48
62090691--62090736	23	2.0	24	83	12	60	67	6	19	6	1.36
62094793--62094843	3	17.0	3	87	0	75	64	3	1	29	1.22
62099024--62099158	59	2.3	59	80	1	171	37	9	17	35	1.82
62104548--62104591	18	2.6	17	82	10	54	22	9	25	43	1.82
62104648--62104677	16	1.9	15	93	6	51	40	13	10	36	1.78
62109422--62109452	12	2.6	12	94	0	53	35	35	3	25	1.72
62113467--62113519	26	2.0	26	100	0	106	30	0	15	54	1.41
62113657--62113702	18	2.6	18	92	0	83	39	0	10	50	1.38
62113657--62113702	6	7.7	6	95	0	74	39	0	10	50	1.38
62117142--62117206	29	2.4	26	76	14	76	53	1	1	43	1.19
62120501--62120889	171	2.3	171	89	3	570	40	13	12	33	1.83
62123054--62123084	15	2.1	14	94	5	53	61	0	3	35	1.12
62124894--62124964	35	2.0	35	97	0	133	35	25	9	29	1.88
62126883--62127050	87	1.9	87	93	0	291	33	14	21	30	1.94
62127246--62127279	16	2.1	16	88	0	50	41	2	20	35	1.68
62129846--62129885	18	2.2	18	86	8	55	12	7	2	77	1.07
62130677--62130733	7	7.4	7	79	14	51	15	0	5	78	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62130676--62130733	16	4.4	13	72	25	50	17	0	5	77	0.94
62135196--62135391	108	1.8	108	85	2	277	26	16	10	46	1.79
62135835--62135972	44	3.2	44	67	17	124	28	24	21	24	1.99
62135874--62136014	42	3.3	42	67	16	126	33	25	17	23	1.96
62136006--62136322	44	7.2	43	63	17	123	24	22	25	26	2.00
62135816--62136492	88	7.8	88	84	3	735	29	22	23	24	1.99
62136603--62136798	95	2.1	95	84	3	252	30	18	23	28	1.98
62136764--62138196	40	33.7	43	72	13	831	33	21	21	23	1.97
62136802--62137005	44	4.9	42	79	11	238	33	22	21	23	1.97
62136805--62138191	84	16.4	81	80	10	806	33	22	20	23	1.97
62136998--62137193	95	2.1	95	84	3	252	30	18	22	28	1.98
62136603--62137400	395	2.0	395	97	0	1497	31	20	22	25	1.98
62137200--62138214	291	3.5	291	86	6	1285	33	23	20	22	1.97
62137196--62138214	84	12.2	84	84	6	1183	33	23	20	22	1.97
62138897--62138936	18	2.2	18	86	8	55	12	7	2	77	1.07
62139727--62139786	8	7.5	8	76	14	52	15	0	5	80	0.88
62141000--62141061	28	2.3	27	82	2	70	45	9	11	33	1.73
62141800--62141832	5	6.6	5	92	0	57	78	0	3	18	0.87
62150408--62150445	5	7.6	5	93	0	67	78	0	2	18	0.86
62154403--62154430	3	9.3	3	100	0	56	32	0	32	35	1.58
62157031--62157060	15	2.0	15	100	0	60	46	0	20	33	1.51
62157639--62157675	19	2.0	18	89	5	56	29	0	0	70	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62160009--62160323	3	105.0	3	83	6	354	3	30	2	62	1.26
62161106--62161142	19	1.9	19	88	0	56	32	0	0	67	0.91
62173972--62174003	13	2.5	13	94	0	55	46	9	6	37	1.61
62191908--62191955	24	2.0	24	87	0	69	33	4	39	22	1.74
62192387--62192431	15	3.0	15	76	0	54	33	4	35	26	1.77
62192869--62192894	3	8.7	3	100	0	52	0	34	34	30	1.58
62201924--62201959	16	2.2	17	90	5	56	52	0	0	47	1.00
62202619--62202665	15	3.1	15	81	0	67	27	17	2	53	1.55
62217578--62217602	4	6.2	4	100	0	50	24	0	0	76	0.80
62223891--62224159	101	2.7	101	87	1	378	29	31	14	23	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213