genome.fa.s14.2.7.7.80.10.50.1000.203.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Length:  64473564

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   

This is table  203  of  213  ( 25468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60757922--60757963	20	2.1	20	86	8	59	38	11	9	40	1.75
60757887--60758068	54	3.4	52	75	11	156	32	15	9	41	1.81
60757943--60758070	35	3.7	34	78	11	116	32	16	8	42	1.78
60757878--60758107	17	12.9	17	67	13	97	31	15	10	42	1.81
60757977--60758225	18	13.1	18	66	21	84	34	12	10	42	1.77
60757978--60758120	35	3.9	36	78	14	152	31	15	9	43	1.79
60758129--60758187	19	3.4	16	78	17	57	38	6	8	45	1.61
60758131--60758170	19	2.2	18	90	4	62	45	2	7	45	1.45
60758173--60758225	19	2.7	19	77	11	63	35	15	13	35	1.86
60758267--60758303	19	2.0	19	89	5	58	51	2	8	37	1.46
60769972--60770145	69	2.5	70	83	5	203	29	14	22	32	1.94
60770149--60770481	149	2.2	146	83	6	413	31	15	18	34	1.92
60770163--60770498	72	4.5	73	87	4	435	31	15	20	32	1.94
60770385--60770747	130	2.8	128	78	6	369	26	14	22	35	1.93
60770879--60770934	25	2.2	25	83	6	67	33	14	7	44	1.72
60770908--60771104	73	2.7	72	87	4	270	32	16	18	32	1.93
60773256--60773490	17	13.3	16	68	18	103	32	14	10	41	1.81
60773306--60773347	20	2.1	20	86	8	59	38	11	9	40	1.75
60773326--60773453	35	3.7	35	79	1	123	32	15	8	42	1.77
60773361--60773503	18	7.9	18	70	15	98	31	14	9	44	1.78
60773362--60773503	35	3.9	35	78	12	153	30	14	9	44	1.78
60773514--60773554	20	2.1	19	86	4	55	48	2	7	41	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60773534--60773616	16	4.7	17	73	13	53	36	10	12	40	1.77
60773413--60773609	39	5.0	37	71	20	118	36	12	10	40	1.78
60773527--60773609	19	4.4	19	70	13	73	39	10	10	38	1.75
60773534--60773605	20	3.9	18	74	15	58	36	11	12	40	1.79
60773534--60773685	56	2.7	55	75	14	134	36	8	11	42	1.72
60774236--60774265	9	3.3	9	90	0	51	30	0	0	70	0.88
60774204--60774256	28	1.9	28	88	11	83	35	0	3	60	1.15
60779948--60780022	37	2.0	37	100	0	150	29	13	10	46	1.76
60781164--60781195	15	2.0	17	88	11	50	9	6	18	65	1.42
60786145--60786516	183	2.0	183	88	4	554	16	19	27	36	1.94
60794585--60794888	147	2.1	147	99	0	601	38	9	12	39	1.76
60798840--60798896	22	2.6	22	80	0	69	22	24	28	24	2.00
60801338--60801382	22	2.0	22	91	0	72	17	26	31	24	1.97
60803839--60803894	22	2.5	22	88	0	85	19	25	30	25	1.98
60804900--60804957	22	2.6	22	88	0	89	20	22	31	25	1.98
60807403--60807452	22	2.3	22	89	0	73	18	22	32	28	1.97
60807412--60807459	22	2.2	22	88	0	69	25	22	22	29	1.99
60809956--60809981	7	3.7	7	100	0	52	46	11	0	42	1.40
60813962--60814019	22	2.6	22	86	0	80	18	22	31	27	1.97
60815607--60815664	22	2.6	22	86	0	80	18	22	31	27	1.97
60819805--60819851	22	2.1	23	84	4	60	6	17	19	57	1.60
60822793--60822853	26	2.3	27	91	5	97	40	6	0	52	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60822892--60822950	27	2.2	27	81	6	66	28	23	27	20	1.99
60823255--60823318	19	3.4	19	78	4	85	35	10	1	51	1.47
60823547--60823605	19	3.2	19	82	4	84	49	0	13	37	1.43
60824181--60824239	27	2.2	27	96	0	109	18	32	23	25	1.97
60824293--60824356	27	2.4	27	97	0	119	46	0	10	42	1.39
60825919--60825958	21	1.9	21	84	0	53	32	5	2	60	1.32
60826389--60826631	51	4.8	49	78	6	236	31	27	16	24	1.96
60826386--60826630	101	2.4	100	87	4	339	31	26	16	25	1.96
60830698--60830756	24	2.3	27	82	11	79	27	22	3	47	1.67
60833200--60833228	13	2.2	13	100	0	58	51	0	17	31	1.45
60839042--60839234	67	2.9	67	88	0	307	32	20	24	23	1.98
60844620--60844758	42	3.3	42	80	2	145	42	18	22	16	1.89
60844892--60844940	23	2.1	23	96	0	89	24	34	12	28	1.91
60849406--60849518	57	2.0	57	87	3	165	31	18	24	24	1.97
60853314--60853371	22	2.7	21	70	19	57	46	1	12	39	1.51
60853816--60853885	3	23.3	3	74	11	63	58	5	1	34	1.31
60853816--60853942	15	7.8	16	70	19	77	56	6	3	33	1.40
60853820--60853962	18	8.5	17	65	20	68	55	6	3	34	1.42
60853820--60853937	51	2.4	48	80	8	130	56	6	3	33	1.42
60853915--60853963	20	2.6	19	84	12	57	53	4	6	36	1.45
60855991--60856024	10	3.4	10	83	0	50	52	0	0	47	1.00
60856988--60857014	12	2.2	12	100	0	54	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60869672--60869753	41	2.0	41	92	0	137	37	2	15	43	1.60
60872044--60872082	21	1.9	20	84	5	51	43	7	17	30	1.77
60872333--60872395	20	3.2	19	78	13	65	41	0	4	53	1.22
60874879--60874937	18	3.1	20	71	11	52	47	0	8	44	1.33
60877073--60877098	3	8.7	3	100	0	52	30	0	0	69	0.89
60877443--60877477	9	3.8	9	96	3	61	68	0	0	31	0.90
60888002--60888042	13	3.2	13	89	0	64	53	0	2	43	1.13
60888343--60888389	17	2.8	17	78	15	53	34	6	0	59	1.23
60892720--60892797	29	2.7	28	84	11	104	25	14	30	29	1.94
60892750--60893111	174	2.1	174	98	0	706	29	14	24	30	1.95
60892949--60893222	145	1.9	145	96	0	503	29	14	23	31	1.95
60900998--60901074	29	2.7	28	86	10	111	25	14	31	28	1.95
60901028--60901385	174	2.1	170	96	2	662	29	14	25	30	1.95
60901224--60901496	142	1.9	145	96	2	507	30	15	23	31	1.95
60921944--60922633	46	16.6	45	77	17	639	36	14	20	28	1.92
60921980--60922498	36	13.0	36	78	16	419	36	13	20	28	1.91
60921944--60922587	82	7.9	82	80	14	585	36	13	20	29	1.91
60922067--60922544	118	4.0	118	93	3	767	36	13	20	29	1.91
60922334--60922633	82	3.4	89	81	13	361	34	15	21	28	1.94
60922016--60922590	118	4.6	128	90	5	623	36	14	20	29	1.92
60923401--60923431	12	2.6	12	94	0	53	3	16	3	77	1.03
60926022--60926174	48	3.2	47	79	3	180	41	15	15	27	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60926069--60926152	25	3.4	25	73	12	75	44	15	13	27	1.83
60934685--60934732	22	2.1	23	85	11	64	22	8	6	62	1.46
60941614--60941656	21	2.0	22	90	4	70	53	0	4	41	1.21
60946238--60946266	10	3.0	10	95	5	51	51	0	6	41	1.28
60957202--60957466	105	2.5	104	79	4	318	29	17	18	33	1.94
60957773--60957838	29	2.2	30	81	7	73	27	3	1	68	1.13
60958873--60959205	104	3.2	104	83	5	395	34	18	18	28	1.95
60959454--60959480	13	2.1	13	100	0	54	44	33	14	7	1.73
60959483--60959541	7	8.3	7	81	3	73	16	16	13	52	1.75
60959784--60959892	37	3.0	37	87	1	166	33	3	13	48	1.60
60959892--60959984	9	10.4	9	88	2	143	32	8	23	35	1.85
60960172--60960453	104	2.7	103	79	6	325	36	19	17	26	1.93
60977353--60977471	61	2.0	61	100	0	238	36	4	15	44	1.65
60977713--60977739	8	3.4	8	100	0	54	59	0	0	40	0.98
60978566--60978652	41	2.2	40	83	6	104	45	4	13	35	1.64
60978755--60978829	20	3.8	20	68	18	57	42	8	12	37	1.71
60978713--60978829	40	2.9	39	78	7	103	42	7	12	36	1.72
60978673--60979015	187	1.8	186	86	3	492	38	5	17	38	1.73
60978898--60979033	40	3.4	40	79	8	134	41	4	14	38	1.66
60978898--60979022	20	6.2	20	72	3	99	42	4	15	37	1.68
60978888--60979165	150	1.9	150	82	6	357	41	5	13	39	1.67
60979094--60979203	40	2.8	40	74	0	103	41	5	11	40	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60979249--60979292	20	2.2	20	83	0	52	45	9	11	34	1.72
60980942--60980989	25	1.9	25	86	0	69	29	20	14	35	1.93
60995332--60995377	10	4.5	10	83	5	56	13	10	2	73	1.17
61001855--61001992	23	5.7	23	70	15	73	60	5	2	31	1.30
61001907--61001972	28	2.5	26	79	11	73	63	9	1	25	1.33
61004207--61004253	23	2.0	23	95	0	85	36	0	10	53	1.36
61004208--61004263	23	2.5	22	85	5	60	37	3	8	50	1.51
61006747--61006884	68	2.0	69	83	9	176	45	23	8	22	1.80
61011154--61011198	22	2.1	21	92	8	74	57	4	0	37	1.19
61012279--61012392	57	2.0	55	81	10	131	17	18	12	51	1.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213