genome.fa.s14.2.7.7.80.10.50.1000.145.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Length:  64473564

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   

This is table  145  of  213  ( 25468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43541618--43541675	22	2.6	23	81	15	68	72	1	1	24	1.03
43541622--43541675	20	2.8	19	78	10	56	72	1	1	24	1.05
43542515--43542557	13	3.5	13	75	18	56	48	13	0	37	1.43
43542515--43542564	23	2.2	23	96	3	93	50	12	0	38	1.40
43543122--43543170	18	2.7	19	81	9	66	40	14	0	44	1.45
43550434--43550468	18	2.1	16	89	10	52	40	5	2	51	1.40
43552868--43553002	36	3.8	36	80	4	148	14	11	35	38	1.82
43552884--43553002	36	3.3	35	87	4	157	13	10	37	38	1.78
43567135--43567332	27	7.3	27	79	6	170	43	18	15	22	1.87
43567111--43567332	54	4.1	53	80	5	205	45	18	13	22	1.85
43567148--43567317	81	2.1	81	84	4	218	44	19	13	22	1.85
43567244--43567348	27	3.9	27	81	5	104	43	18	13	24	1.85
43568681--43568746	33	2.1	32	86	8	91	15	10	9	65	1.47
43571461--43571551	37	2.5	37	81	1	103	15	9	30	43	1.79
43572347--43572386	21	1.9	21	85	10	55	27	5	27	40	1.77
43573860--43574143	113	2.5	111	79	4	293	25	10	25	39	1.87
43574236--43574269	5	6.4	5	87	12	50	20	0	0	79	0.73
43574237--43574270	17	2.0	17	100	0	68	23	0	0	76	0.79
43574332--43574377	21	2.2	21	96	0	83	23	26	17	32	1.97
43578585--43578638	6	8.5	6	90	8	72	20	16	0	62	1.32
43578588--43578630	7	6.4	7	91	5	63	16	13	0	69	1.19
43578622--43578747	51	2.5	50	82	8	130	28	19	5	46	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43580337--43580393	9	6.3	9	80	8	53	77	0	14	8	0.99
43580348--43580393	17	2.6	17	83	12	58	76	0	15	8	1.02
43583877--43583917	18	2.3	18	87	8	57	9	29	4	56	1.53
43588996--43589031	14	2.5	15	90	4	56	58	0	0	41	0.98
43592878--43592945	16	4.2	16	94	0	118	27	0	36	35	1.58
43592878--43592945	32	2.1	32	100	0	136	27	0	36	35	1.58
43592926--43593035	45	2.6	41	78	9	116	32	5	29	32	1.80
43593169--43593210	15	2.9	15	82	10	52	52	0	0	47	1.00
43593467--43593519	27	2.1	27	82	10	67	43	0	0	56	0.99
43598653--43598695	20	2.2	20	84	12	54	39	11	6	41	1.68
43608273--43608314	22	2.0	21	85	4	57	47	19	4	28	1.69
43610163--43610226	28	2.3	28	91	0	101	43	17	18	20	1.88
43612512--43612547	16	2.2	16	90	0	54	33	2	33	30	1.72
43617430--43617533	47	2.2	46	78	8	111	47	4	26	21	1.71
43617600--43617691	40	2.3	40	88	0	130	22	27	9	40	1.85
43618093--43618902	406	2.0	403	90	3	1286	38	11	20	30	1.87
43637658--43637701	18	2.4	18	88	0	61	34	6	0	59	1.24
43637740--43637807	23	2.9	23	78	10	84	33	5	7	52	1.53
43639759--43639804	19	2.4	18	82	10	56	23	19	8	47	1.77
43642676--43642732	17	3.2	16	77	18	51	70	0	15	14	1.18
43643981--43644484	44	11.4	44	77	6	428	30	14	22	32	1.94
43643981--43644484	133	3.8	133	85	4	633	30	14	22	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43643986--43644526	89	6.1	90	76	5	406	30	14	22	32	1.94
43644296--43644539	133	1.8	133	83	3	321	30	17	22	29	1.97
43644302--43644570	133	2.0	133	79	7	287	31	17	22	27	1.97
43646071--43646160	23	3.8	23	76	13	92	30	6	10	53	1.60
43655287--43655368	33	2.5	33	96	4	148	35	19	23	21	1.96
43657426--43657465	21	1.9	21	84	0	53	55	2	10	32	1.47
43657709--43657738	7	4.4	7	95	4	53	86	0	0	13	0.57
43657710--43657787	24	3.2	24	83	3	75	73	0	3	23	1.00
43659361--43659820	50	9.2	50	69	3	289	22	21	23	32	1.98
43659305--43659826	100	5.2	100	86	3	674	22	22	23	32	1.98
43659994--43660648	44	15.0	45	67	12	161	29	21	17	31	1.96
43659869--43660638	175	4.4	175	91	0	1209	29	21	18	31	1.97
43659869--43660638	349	2.2	350	90	0	1236	29	21	18	31	1.97
43662081--43662122	7	6.0	7	86	10	59	14	16	0	69	1.20
43662073--43662120	15	3.4	14	80	8	62	14	14	0	70	1.16
43662073--43662129	21	2.6	21	80	5	69	15	15	0	68	1.22
43662073--43662128	14	3.9	15	84	11	64	16	16	0	67	1.23
43662996--43663041	6	7.7	6	90	0	56	17	6	8	67	1.39
43667485--43667524	21	1.9	21	84	0	53	55	2	10	32	1.47
43667768--43667814	12	3.8	12	78	13	51	80	0	0	19	0.70
43667769--43667814	24	2.0	24	91	4	76	80	0	0	19	0.71
43667769--43667806	17	2.2	18	90	4	60	81	0	0	18	0.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43670676--43670766	39	2.4	38	79	17	107	37	27	19	15	1.92
43673805--43673844	21	2.0	21	90	5	64	42	15	0	42	1.46
43674257--43674305	8	5.6	9	80	9	57	57	0	0	42	0.99
43674243--43674305	27	2.5	24	78	14	72	57	1	0	41	1.08
43674257--43674305	17	2.8	17	79	14	55	57	0	0	42	0.99
43675103--43675153	13	3.9	13	86	0	75	33	9	23	33	1.88
43677166--43677354	72	2.6	72	81	5	215	56	14	4	24	1.58
43679933--43680001	20	3.2	20	68	31	61	27	5	13	53	1.62
43679937--43680009	24	3.2	24	68	31	77	27	5	12	54	1.59
43679921--43680011	45	2.0	45	100	0	182	28	6	10	53	1.61
43682952--43683006	20	2.7	20	71	2	56	27	1	14	56	1.49
43683409--43683520	13	8.8	13	81	11	124	40	17	6	35	1.75
43683427--43683520	38	2.5	38	94	0	161	42	15	6	35	1.73
43683409--43683520	25	4.4	26	78	11	106	40	17	6	35	1.75
43685229--43685259	12	2.6	12	94	0	53	16	38	16	29	1.90
43685980--43686130	79	2.0	75	89	5	230	47	5	13	32	1.67
43686909--43686946	19	1.9	19	89	5	58	44	18	21	15	1.86
43687717--43687768	7	7.3	7	78	4	59	17	17	13	51	1.76
43687824--43687848	7	3.6	7	100	0	50	16	16	16	52	1.76
43688019--43688124	37	2.9	37	84	5	135	35	3	13	47	1.61
43688137--43688211	9	8.4	9	86	2	89	30	8	26	34	1.85
43688128--43688211	18	4.7	18	91	2	125	32	8	25	34	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43688128--43688211	35	2.4	36	89	2	125	32	8	25	34	1.85
43688371--43688395	12	2.1	12	100	0	50	16	24	36	24	1.94
43688824--43688939	22	5.8	20	71	13	62	24	13	14	47	1.81
43688835--43688874	11	3.8	11	75	24	50	32	5	15	47	1.66
43688880--43688939	22	2.7	22	94	0	102	18	18	15	48	1.81
43709368--43709425	25	2.3	25	93	0	98	36	37	6	18	1.78
43711564--43711906	51	6.8	50	77	5	330	29	25	16	29	1.97
43711563--43711906	102	3.4	102	88	2	460	29	25	16	29	1.96
43719797--43719849	13	4.0	13	75	22	56	24	13	13	49	1.77
43719797--43719850	14	4.0	14	77	15	60	24	12	12	50	1.76
43723902--43724077	88	2.0	85	88	6	257	44	7	22	25	1.79
43727972--43728040	20	3.5	20	75	13	70	13	27	15	43	1.84
43731148--43731213	33	2.0	33	85	5	89	33	25	0	40	1.56
43735118--43735170	9	5.7	9	83	16	72	45	18	11	24	1.82
43735117--43735170	20	2.8	20	88	8	85	46	18	11	24	1.81
43735108--43735164	29	2.0	29	86	6	80	45	19	10	24	1.81
43735625--43735651	13	2.1	13	100	0	54	25	7	14	51	1.68
43735848--43735883	18	2.0	18	88	0	54	33	22	16	27	1.95
43744266--43744294	14	2.1	14	100	0	58	58	0	41	0	0.98
43746879--43746918	4	10.0	4	100	0	80	25	0	25	50	1.50
43756322--43756579	128	2.0	128	98	0	498	31	22	18	27	1.97
43759582--43759661	25	3.2	25	76	3	81	25	27	12	35	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43761951--43762033	36	2.2	36	83	10	105	53	3	3	39	1.36
43762446--43762485	19	2.1	19	86	9	55	32	5	5	57	1.42
43767750--43767798	19	2.6	19	84	9	57	32	2	2	63	1.17
43767747--43767805	23	2.5	24	74	20	61	35	1	1	61	1.16
43771187--43771335	41	3.7	40	80	11	144	17	17	28	36	1.92
43774579--43774619	13	3.2	13	83	13	57	34	4	9	51	1.56
43776657--43776721	32	2.1	32	97	2	123	47	12	9	30	1.72
43782282--43782315	14	2.4	14	90	0	50	0	20	2	76	0.92
43782866--43782930	32	2.1	32	97	2	123	47	12	9	30	1.72
43783310--43783417	9	12.2	9	71	14	64	49	15	3	31	1.62

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213