genome.fa.s14.2.7.7.80.10.50.1000.147.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Length:  64473564

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   

This is table  147  of  213  ( 25468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44199976--44200905	44	21.2	44	62	14	150	24	25	23	26	2.00
44202205--44202255	7	7.0	7	76	14	50	15	11	0	72	1.12
44202225--44202254	13	2.3	13	94	0	51	16	10	0	73	1.09
44203119--44203148	15	2.0	15	93	0	51	3	23	0	73	0.98
44203125--44203195	20	3.6	19	75	11	63	8	12	2	76	1.12
44203156--44203222	28	2.4	28	78	16	77	11	8	5	73	1.25
44211175--44211244	29	2.3	31	76	11	74	41	1	1	55	1.17
44223326--44223376	14	3.5	14	80	19	68	31	9	5	52	1.58
44223337--44223388	16	3.4	16	80	20	74	32	9	5	51	1.58
44223326--44223388	30	2.1	30	100	0	126	31	9	6	52	1.59
44224595--44224649	28	2.0	28	96	0	101	49	5	21	23	1.70
44236846--44237124	113	2.5	113	78	4	285	34	17	21	26	1.95
44237070--44237175	54	2.0	54	90	0	167	35	17	20	25	1.95
44237141--44237533	207	1.9	207	86	5	571	31	18	24	25	1.97
44237976--44238042	35	1.9	35	81	6	82	22	0	31	46	1.52
44238014--44238070	15	3.9	14	84	11	62	19	0	35	45	1.50
44238445--44238508	24	2.7	24	81	13	62	48	0	1	50	1.10
44239135--44239228	44	2.1	44	90	3	145	22	32	8	36	1.84
44240812--44240880	21	3.3	21	85	0	75	37	18	40	2	1.66
44240870--44240901	12	2.7	12	95	0	55	43	12	40	3	1.58
44241367--44241489	42	2.9	42	90	2	192	25	21	21	31	1.98
44241367--44241506	43	3.3	42	88	5	192	25	22	21	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44246776--44246923	41	3.6	41	82	0	188	18	28	18	33	1.95
44247543--44247763	63	3.5	63	83	2	257	33	33	8	23	1.86
44260150--44260241	40	2.3	38	83	9	121	33	19	22	23	1.97
44260289--44260434	41	3.6	41	74	4	134	25	21	23	28	1.99
44260954--44261109	81	1.9	83	92	2	262	28	0	28	42	1.60
44261087--44261138	14	3.7	14	75	10	52	25	0	42	32	1.55
44261104--44261153	21	2.4	22	80	10	59	28	0	40	32	1.57
44261120--44261159	21	1.9	21	84	0	53	30	0	37	32	1.58
44265108--44265279	19	8.8	19	88	2	218	39	13	8	38	1.74
44265607--44266236	132	4.8	132	93	0	1057	28	24	19	28	1.98
44265696--44265890	44	4.4	44	64	19	109	28	23	18	30	1.98
44272496--44272591	19	4.7	21	75	14	74	41	14	5	38	1.68
44272496--44272553	22	2.6	22	81	7	64	41	17	5	36	1.72
44272509--44272604	19	4.8	19	84	5	111	39	14	7	38	1.74
44275807--44275832	12	2.2	12	100	0	52	23	0	15	61	1.33
44276031--44276247	43	5.1	43	81	7	212	24	17	24	33	1.96
44276857--44276887	13	2.4	13	94	0	53	22	32	32	12	1.92
44281199--44281254	21	2.7	21	86	8	80	44	21	21	12	1.85
44281474--44281514	6	6.7	6	86	5	55	65	19	0	14	1.26
44281472--44281514	19	2.3	19	84	4	61	67	18	0	13	1.23
44292227--44292801	159	3.6	159	92	2	924	27	10	8	53	1.64
44292955--44292993	20	2.0	20	90	5	62	69	10	0	20	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44293035--44293105	6	11.5	6	79	10	63	0	40	2	56	1.14
44293098--44293154	10	5.7	10	85	0	78	0	28	0	71	0.86
44293098--44293174	20	3.8	20	76	6	75	2	29	0	67	1.04
44293090--44293174	30	2.8	30	96	0	152	2	30	0	67	1.04
44293210--44293274	27	2.4	27	81	0	76	6	33	32	27	1.82
44296933--44296975	13	3.1	14	84	12	54	60	0	0	39	0.97
44299441--44299495	3	18.3	3	88	0	83	60	0	5	34	1.20
44300593--44300620	5	5.6	5	100	0	56	17	17	0	64	1.30
44306253--44306283	16	1.9	16	93	0	53	32	0	9	58	1.31
44315954--44316130	29	6.1	29	83	6	223	20	27	14	37	1.92
44315954--44316130	59	3.0	57	83	8	214	20	27	14	37	1.92
44315954--44316130	88	2.0	87	86	7	243	20	27	14	37	1.92
44315984--44316150	88	1.9	88	86	4	239	20	27	14	37	1.91
44319334--44319412	27	3.0	26	83	7	104	17	17	24	40	1.91
44323871--44324127	29	8.8	29	79	4	232	21	26	14	37	1.91
44323871--44324137	117	2.3	117	78	5	281	21	25	13	38	1.91
44324336--44324383	23	2.1	23	96	0	87	37	6	4	52	1.46
44343427--44343540	42	2.6	43	80	9	106	29	24	14	30	1.95
44344799--44345145	43	7.8	43	77	10	254	31	29	17	22	1.96
44344849--44344951	54	1.9	54	89	0	161	34	29	18	17	1.94
44344806--44344983	97	1.8	97	87	4	270	34	30	16	19	1.93
44344901--44345165	86	3.1	84	80	5	289	31	27	17	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44348870--44348895	7	3.7	7	100	0	52	46	26	0	26	1.53
44348867--44348901	14	2.5	13	86	13	52	45	25	0	28	1.54
44348876--44348949	33	2.3	33	88	6	107	35	39	2	22	1.69
44348876--44348962	33	2.7	32	82	5	102	36	39	2	21	1.66
44349816--44350098	41	6.9	41	89	0	413	28	27	21	21	1.99
44357403--44357464	25	2.5	25	86	0	79	25	24	14	35	1.93
44368587--44368635	24	2.0	24	100	0	98	38	20	12	28	1.89
44372821--44372868	20	2.4	20	85	0	69	27	33	16	22	1.96
44374223--44374248	13	2.0	13	100	0	52	61	7	7	23	1.49
44375452--44375486	18	1.9	18	88	11	54	68	2	17	11	1.31
44378627--44379146	262	2.0	262	94	0	916	35	23	12	29	1.91
44380533--44380570	15	2.5	15	87	12	51	42	7	26	23	1.81
44381396--44381460	30	2.2	30	91	0	103	29	32	23	15	1.95
44382598--44382765	29	5.8	29	81	4	169	21	26	13	38	1.91
44384101--44384134	11	3.0	11	91	4	50	52	5	0	41	1.25
44386683--44386740	25	2.4	24	82	2	71	74	5	0	20	1.01
44386683--44386765	39	2.1	41	80	15	102	68	6	1	24	1.19
44386583--44386775	44	4.9	39	71	15	123	63	5	2	27	1.30
44386805--44386875	26	2.7	26	88	2	106	61	2	2	32	1.24
44386810--44386892	26	3.2	26	86	3	105	65	2	2	30	1.18
44388428--44388966	44	11.9	44	71	12	306	28	21	19	30	1.97
44388428--44388903	96	5.3	88	70	13	320	29	21	18	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44388458--44388724	140	1.9	139	81	2	320	29	22	18	29	1.97
44388421--44388919	181	2.7	181	85	2	626	29	21	18	30	1.97
44389790--44389843	5	10.8	5	74	21	51	0	16	0	83	0.65
44389795--44389844	11	4.7	10	83	11	64	0	16	0	84	0.63
44389788--44389844	21	2.7	21	84	10	73	0	15	0	84	0.63
44395103--44395351	125	2.0	125	91	0	399	29	16	22	30	1.96
44395626--44395902	121	2.3	121	86	5	369	22	18	29	29	1.98
44395626--44395878	41	6.2	41	86	3	332	22	18	30	28	1.98
44396880--44396983	43	2.4	43	83	0	127	24	0	35	40	1.55
44398372--44398421	20	2.5	20	100	0	100	22	8	4	66	1.35
44398993--44399063	32	2.2	33	90	10	110	14	4	12	69	1.34
44401467--44401757	43	6.8	43	77	6	177	24	15	30	29	1.96
44401467--44401757	86	3.4	85	83	5	302	24	15	30	29	1.96
44402697--44402814	25	4.9	25	77	14	140	44	14	0	41	1.45
44402694--44402858	70	2.4	69	93	1	276	44	12	0	42	1.42
44403956--44403981	7	3.7	7	100	0	52	57	15	0	26	1.38
44404146--44404189	20	2.1	21	84	12	56	50	6	0	43	1.29
44405181--44405257	11	6.9	11	80	14	79	44	0	31	24	1.54
44405181--44405257	22	3.5	22	83	16	97	44	0	31	24	1.54
44405183--44405256	34	2.2	35	85	7	100	43	0	32	24	1.55
44405712--44405807	38	2.5	37	83	10	104	65	6	1	27	1.23
44405784--44405916	24	5.5	24	79	11	105	60	3	3	33	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44405833--44405916	27	3.3	25	85	9	116	65	3	1	29	1.17
44406701--44406753	22	2.5	21	77	17	56	79	0	3	16	0.88
44407576--44407628	27	2.0	27	92	0	88	35	11	24	28	1.90
44412059--44412128	35	2.0	35	100	0	140	25	8	28	37	1.85
44427266--44427393	29	4.4	29	85	1	150	39	17	19	23	1.93
44427242--44427393	58	2.6	58	86	1	189	39	19	18	23	1.92
44427233--44427425	58	3.3	58	81	2	174	38	19	17	24	1.93
44427259--44427434	29	6.1	29	80	5	124	37	18	16	27	1.92
44428252--44428335	42	2.0	42	97	0	159	39	15	16	28	1.89
44433932--44433970	17	2.2	17	86	4	51	46	0	15	38	1.46

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213