genome.fa.s14.2.7.7.80.10.50.1000.57.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Length:  64473564

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   

This is table  57  of  213  ( 25468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15523379--15523403	13	1.9	13	100	0	50	84	0	8	8	0.79
15534313--15534504	94	2.0	95	90	3	307	37	17	13	31	1.88
15537819--15537866	6	8.2	6	97	2	89	50	33	0	16	1.46
15542796--15542864	12	6.3	11	71	17	54	62	2	5	28	1.33
15543072--15543110	19	2.0	21	85	10	55	69	5	10	15	1.34
15543305--15543360	21	2.8	19	82	10	76	37	16	8	37	1.80
15543316--15543359	21	2.1	21	100	0	88	38	13	9	38	1.77
15548094--15548130	6	5.8	6	90	9	56	45	16	16	21	1.84
15548110--15548253	45	3.3	43	80	11	179	40	20	18	20	1.92
15548114--15548253	39	3.4	39	85	5	172	40	21	17	20	1.92
15549322--15549354	16	2.1	16	94	0	57	3	18	0	78	0.87
15549363--15549434	5	14.4	5	74	20	62	55	2	0	41	1.14
15549364--15549416	19	2.8	19	78	13	65	58	0	0	41	0.98
15549370--15549432	25	2.5	26	82	7	69	57	3	0	39	1.15
15550746--15550777	16	1.9	17	93	6	57	46	0	0	53	1.00
15551408--15551442	14	2.5	14	85	0	52	22	57	2	17	1.53
15552615--15552644	5	6.0	5	96	0	51	36	0	3	60	1.14
15553153--15553200	24	2.0	24	95	0	87	33	6	8	52	1.57
15554815--15554840	12	2.2	12	100	0	52	23	0	26	50	1.50
15560638--15560664	10	2.7	10	100	0	54	11	7	7	74	1.23
15561168--15561219	24	2.2	24	89	0	77	55	9	1	32	1.43
15563328--15563364	6	6.2	6	100	0	74	51	32	0	16	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15569678--15569861	92	2.0	95	89	4	284	38	17	13	30	1.89
15573171--15573200	6	5.2	6	96	4	53	50	33	0	16	1.46
15577723--15577791	12	6.3	11	71	17	54	62	2	5	28	1.33
15591781--15591805	5	5.0	5	100	0	50	60	20	0	20	1.37
15601445--15601683	132	1.8	133	87	4	358	30	12	12	43	1.81
15602174--15602219	7	6.3	7	85	9	65	43	39	0	17	1.49
15602174--15602219	15	3.1	15	87	9	60	43	39	0	17	1.49
15602182--15602229	15	3.2	15	82	8	53	47	35	0	16	1.47
15602527--15602605	41	1.9	41	94	0	140	29	29	21	20	1.98
15602537--15602945	114	3.6	114	89	1	626	27	26	22	22	1.99
15602537--15602945	227	1.8	227	91	2	678	27	26	22	22	1.99
15602878--15602986	41	2.7	41	89	1	166	29	30	22	18	1.97
15605537--15605592	21	2.7	21	88	0	85	26	8	35	28	1.87
15605701--15605735	9	3.8	9	88	7	52	48	0	0	51	1.00
15612040--15612125	26	2.9	32	80	20	130	38	13	10	37	1.80
15616750--15616833	41	2.0	41	100	0	168	19	11	14	54	1.70
15619816--15619856	18	2.3	18	95	0	73	31	26	19	21	1.97
15624371--15624485	54	2.1	53	93	3	194	41	16	20	20	1.90
15627353--15627431	25	3.3	24	71	10	72	56	0	7	35	1.28
15627355--15627397	23	1.9	22	90	4	68	55	0	6	37	1.27
15628080--15628158	19	4.0	19	88	8	113	39	16	8	35	1.80
15628985--15629260	50	5.5	50	70	2	205	26	22	21	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15629036--15629319	50	5.7	50	70	3	212	25	23	20	29	1.99
15629235--15629342	50	2.2	50	83	3	128	28	23	20	27	1.99
15628984--15629949	100	9.3	100	69	10	535	26	23	20	29	1.99
15629263--15629660	168	2.4	168	87	0	573	27	25	18	28	1.98
15629664--15629954	50	5.8	50	72	3	235	25	24	21	28	1.99
15629620--15629963	50	6.9	49	70	5	217	25	23	21	29	1.99
15631364--15631447	42	2.0	42	86	4	116	27	28	13	30	1.94
15637628--15637846	100	2.2	100	88	0	312	28	20	18	32	1.96
15637707--15637846	50	2.8	50	73	0	145	28	21	17	32	1.96
15638079--15638178	50	2.0	50	90	0	155	29	23	20	28	1.98
15637843--15638446	310	1.9	312	88	2	906	27	25	18	28	1.98
15638611--15638696	44	2.0	44	86	4	120	27	26	13	31	1.94
15639295--15639364	34	2.1	34	100	0	140	28	25	5	40	1.78
15644776--15644835	3	20.0	3	100	0	120	66	0	0	33	0.92
15645151--15645226	36	2.1	36	80	11	84	50	1	10	38	1.45
15645328--15645374	23	2.0	24	87	8	69	65	2	0	31	1.04
15645778--15645831	19	2.8	19	94	0	90	37	18	9	35	1.83
15660207--15660289	43	1.9	43	90	4	132	48	1	26	24	1.59
15660286--15660319	7	4.7	7	96	3	59	55	0	17	26	1.42
15660738--15660772	14	2.5	14	100	0	70	20	0	25	54	1.45
15666660--15666816	37	4.0	37	80	14	190	26	22	15	36	1.93
15666737--15666955	52	4.5	46	88	7	276	27	21	15	35	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15666776--15666949	52	3.3	52	93	1	285	26	22	14	36	1.93
15671371--15671527	37	4.0	37	80	14	190	26	22	15	36	1.93
15671448--15671666	52	4.5	46	88	7	276	27	21	15	35	1.93
15671487--15671660	52	3.3	52	93	1	285	26	22	14	36	1.93
15674290--15674331	20	2.1	20	100	0	84	76	9	9	4	1.15
15680126--15680164	4	9.8	4	88	0	51	30	2	17	48	1.61
15680114--15680165	8	6.5	8	84	0	50	36	1	13	48	1.54
15680114--15680165	12	4.3	12	82	0	50	36	1	13	48	1.54
15691140--15691185	21	2.1	23	92	8	78	15	10	8	65	1.47
15704242--15704272	9	3.4	9	100	0	62	9	0	32	58	1.31
15704485--15704522	20	1.9	20	94	0	67	44	2	0	52	1.14
15708451--15708489	14	2.8	14	96	0	69	35	2	0	61	1.10
15708451--15708490	17	2.4	17	87	8	55	35	2	0	62	1.09
15715109--15715159	26	2.0	26	100	0	102	15	47	0	37	1.46
15725964--15726256	84	3.4	85	82	5	358	37	22	9	30	1.87
15726391--15726438	20	2.4	20	86	6	62	54	0	2	43	1.12
15726445--15726514	9	7.4	9	78	9	68	68	1	1	28	1.06
15726432--15726540	30	3.7	30	73	16	86	66	0	3	28	1.14
15726450--15726525	39	2.0	40	84	7	104	64	1	2	31	1.15
15726444--15726534	10	9.7	9	71	13	60	68	1	3	27	1.12
15726413--15726574	59	2.8	57	82	9	166	63	1	3	30	1.22
15726559--15726614	19	2.8	19	81	10	60	66	1	8	23	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15726562--15726615	20	2.8	19	78	13	56	64	1	7	25	1.30
15731153--15731251	43	2.3	43	89	1	144	29	25	17	28	1.97
15731617--15731730	57	2.0	57	100	0	228	43	8	7	40	1.63
15734654--15734869	26	8.3	26	81	0	207	19	12	26	40	1.88
15741388--15741466	29	2.8	30	71	9	76	55	3	11	29	1.52
15743381--15743846	44	10.2	43	68	15	159	26	21	18	33	1.96
15743408--15743837	142	3.0	142	95	1	754	26	20	18	33	1.96
15743743--15743846	45	2.3	44	88	3	154	25	25	19	30	1.98
15756249--15756327	29	2.8	30	71	9	76	55	3	11	29	1.52
15759223--15759260	19	2.0	20	85	10	53	57	2	2	36	1.26
15759876--15759936	29	2.1	29	81	6	70	37	8	11	42	1.71
15767760--15767826	32	2.1	31	83	8	82	38	2	0	58	1.14
15767756--15767812	15	3.8	15	76	13	55	36	3	0	59	1.14
15775370--15775413	17	2.6	17	85	3	63	47	0	11	40	1.39
15775366--15775417	27	1.9	27	84	0	68	53	0	9	36	1.34
15775614--15775663	26	2.0	26	84	4	66	38	0	4	58	1.17
15780865--15781372	44	11.5	42	74	7	397	27	16	26	29	1.97
15780864--15781370	132	3.8	132	92	0	827	28	15	26	29	1.96
15781362--15781591	44	5.3	44	63	12	132	26	31	23	18	1.97
15781355--15781668	88	3.6	88	91	0	497	27	30	24	18	1.98
15781670--15781796	68	1.9	68	85	6	177	25	18	24	31	1.98
15781738--15781856	44	2.7	44	84	7	152	26	16	27	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15782523--15782599	19	3.7	21	82	14	88	35	7	15	41	1.76
15782534--15782599	21	3.0	24	85	12	81	36	7	16	39	1.77
15782916--15782957	3	14.0	3	89	0	57	30	4	2	61	1.29
15782874--15782933	20	2.9	20	76	14	59	26	1	6	65	1.27
15783039--15783072	16	2.0	16	88	11	50	35	0	0	64	0.94
15783093--15783128	17	2.1	18	89	5	56	38	11	0	50	1.38
15783251--15783306	27	2.2	26	79	14	64	39	0	5	55	1.23
15783491--15783534	18	2.5	18	85	10	56	22	0	6	70	1.11
15785420--15785454	17	2.1	17	88	0	52	54	0	8	37	1.31
15785578--15785624	3	15.7	3	86	0	67	61	2	4	31	1.27

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213