genome.fa.s14.2.7.7.80.10.50.1000.24.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Length:  64473564

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   

This is table  24  of  213  ( 25468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6318293--6318329	14	2.5	15	86	8	58	48	0	0	51	1.00
6323788--6324007	40	5.5	40	89	2	300	25	27	24	22	2.00
6323788--6324007	81	2.8	80	86	3	300	25	27	24	22	2.00
6330321--6330358	18	2.1	19	90	5	60	21	21	5	52	1.66
6354886--6354911	13	2.0	13	100	0	52	23	46	15	15	1.83
6374582--6374607	2	13.0	2	100	0	52	50	0	0	50	1.00
6384648--6384685	18	2.0	20	85	10	53	36	2	31	28	1.71
6393548--6393583	18	2.0	18	88	0	54	80	5	0	13	0.88
6393654--6393695	12	3.2	13	81	18	52	76	0	2	21	0.90
6394593--6394617	12	2.1	12	100	0	50	0	8	16	76	1.02
6413240--6413299	27	2.2	28	80	14	72	33	3	0	63	1.11
6415046--6415110	33	1.9	34	87	3	96	26	18	24	30	1.98
6415156--6415309	41	3.7	41	89	4	247	16	18	33	30	1.94
6415728--6415789	7	8.7	7	83	3	61	20	0	45	33	1.52
6415728--6415775	21	2.3	21	89	7	71	20	0	47	31	1.50
6415728--6415800	14	5.1	14	77	11	67	21	1	43	32	1.61
6416008--6416056	22	2.3	21	79	6	55	30	2	30	36	1.69
6421864--6421899	19	2.0	19	89	10	58	8	0	36	55	1.30
6425586--6425764	42	4.2	42	80	4	189	31	28	15	24	1.95
6425582--6425763	85	2.1	84	81	6	197	31	28	16	23	1.96
6425586--6425774	43	4.4	43	82	4	186	31	27	15	25	1.96
6425618--6425774	85	1.8	85	82	5	201	31	29	15	23	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6427861--6428101	115	2.1	115	96	1	448	49	16	16	17	1.80
6430349--6430820	148	3.2	148	92	3	745	31	14	12	40	1.84
6431648--6431718	21	3.3	20	76	9	70	42	30	1	25	1.64
6431973--6432235	115	2.3	113	88	2	402	25	28	21	23	1.99
6432130--6432301	71	2.4	73	89	4	260	25	26	22	25	2.00
6432018--6432421	186	2.2	187	88	2	600	25	26	22	25	2.00
6432204--6432526	113	2.8	113	87	4	454	26	25	23	24	2.00
6449434--6449829	131	3.1	127	83	3	402	26	20	22	31	1.98
6449542--6450509	87	11.1	87	74	5	609	24	23	21	30	1.99
6449579--6449873	131	2.3	131	91	0	464	25	23	21	29	1.99
6449619--6450091	218	2.2	218	94	0	829	24	22	22	30	1.99
6449847--6450509	131	5.1	131	93	0	1110	23	23	21	30	1.99
6449668--6450509	262	3.2	261	86	2	1075	24	23	21	30	1.99
6449629--6450223	218	2.7	218	87	1	701	24	22	23	30	1.99
6450473--6450884	44	9.3	46	72	10	257	28	22	19	29	1.98
6450473--6451223	44	17.1	44	68	12	224	27	22	19	30	1.98
6450636--6451147	134	3.9	133	76	6	488	26	22	20	29	1.99
6451035--6451190	41	3.6	44	77	10	142	28	23	19	28	1.98
6451472--6451599	69	1.9	67	95	3	229	33	26	13	26	1.93
6458432--6458526	10	9.1	10	76	15	61	36	3	1	58	1.21
6459828--6459884	26	2.2	26	81	6	62	66	14	5	14	1.41
6459842--6459897	26	2.2	26	86	0	76	66	10	8	14	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6459880--6459911	16	2.0	16	93	0	55	81	0	15	3	0.82
6462055--6462182	43	3.0	43	80	8	136	28	24	19	28	1.99
6463069--6463125	28	2.0	28	90	6	89	38	5	0	56	1.22
6465983--6466018	18	2.1	18	89	5	56	63	0	0	36	0.94
6474047--6474089	22	2.0	22	81	9	52	37	9	0	53	1.33
6474141--6474206	33	2.0	33	82	14	82	18	7	7	66	1.40
6476224--6476265	12	3.1	14	80	16	52	23	7	0	69	1.13
6487021--6487063	22	2.0	22	81	9	52	37	9	0	53	1.33
6487115--6487180	33	2.0	33	82	14	82	18	7	7	66	1.40
6489200--6489238	13	2.7	15	80	15	55	20	7	0	71	1.10
6493223--6493253	13	2.4	13	94	0	53	83	3	12	0	0.75
6498553--6498582	12	2.5	12	100	0	60	23	10	16	50	1.75
6504473--6504617	71	2.0	71	93	0	245	29	22	24	24	1.99
6506024--6506090	25	2.8	24	82	13	68	22	5	0	71	1.07
6506037--6506090	6	8.7	6	78	15	56	22	3	0	74	0.98
6506038--6506090	19	2.7	20	80	16	58	22	3	0	73	0.99
6508856--6508891	16	2.2	16	90	0	54	0	36	0	63	0.94
6509006--6509042	19	1.9	20	94	5	67	40	5	5	48	1.49
6509122--6509155	16	2.1	16	88	5	50	55	0	0	44	0.99
6511270--6511309	21	1.9	21	85	10	55	22	45	0	32	1.53
6517528--6517557	15	2.0	15	100	0	60	26	46	0	26	1.53
6517629--6517675	20	2.2	22	85	7	71	36	44	0	19	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6518195--6518353	41	3.9	40	84	5	212	31	24	20	23	1.98
6520932--6521013	37	2.3	37	91	4	132	35	14	24	25	1.94
6529222--6529246	3	8.3	3	100	0	50	68	0	0	32	0.90
6529234--6529274	21	2.0	21	85	9	57	68	0	7	24	1.15
6538179--6538214	11	3.2	11	92	4	54	19	33	0	47	1.50
6538186--6538220	11	3.1	11	91	4	52	25	28	0	45	1.54
6538194--6538317	51	2.4	51	93	0	203	29	25	0	45	1.59
6540126--6540165	18	2.2	18	95	0	71	22	30	7	40	1.81
6540434--6540490	21	2.7	21	86	5	80	35	35	24	5	1.78
6540616--6540741	25	5.3	24	71	20	104	42	0	13	42	1.49
6540594--6540750	70	2.3	67	90	5	251	42	0	12	44	1.47
6540609--6540719	35	3.2	35	63	19	86	40	0	13	45	1.50
6540795--6541113	47	6.8	47	94	2	568	46	21	4	27	1.71
6540795--6541113	24	13.5	24	92	3	533	46	21	4	27	1.71
6540795--6541113	71	4.5	71	93	3	554	46	21	4	27	1.71
6541126--6541341	116	1.9	117	94	1	380	37	10	7	43	1.68
6544342--6544377	11	3.2	11	92	4	54	47	0	33	19	1.50
6547184--6547243	24	2.6	23	76	15	61	33	0	6	60	1.23
6548847--6548876	13	2.2	14	94	5	53	50	6	10	33	1.62
6548988--6549090	24	4.0	24	71	22	75	50	1	10	36	1.48
6553390--6553474	27	3.1	27	98	0	161	18	31	31	17	1.95
6567535--6567627	46	2.0	46	100	0	186	41	10	15	32	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6568086--6568342	50	5.1	49	68	7	176	29	19	24	26	1.98
6568029--6568326	100	3.0	100	92	0	488	30	20	23	25	1.98
6570062--6570134	26	2.9	27	78	12	82	32	10	1	54	1.44
6570075--6570127	24	2.2	24	86	6	72	33	11	0	54	1.36
6572273--6572388	49	2.4	49	79	0	124	28	25	20	25	1.99
6572311--6572412	49	2.1	49	81	0	114	28	22	20	28	1.99
6575512--6575551	9	4.6	9	84	6	55	0	27	0	72	0.85
6577305--6577380	23	3.3	23	86	0	116	22	22	25	30	1.99
6581070--6581133	13	4.9	13	100	0	128	39	29	7	23	1.83
6597953--6597990	11	3.5	11	85	0	58	52	0	0	47	1.00
6598284--6598331	3	17.0	3	79	12	57	31	0	4	64	1.12
6598306--6598370	29	2.3	29	86	7	89	44	0	4	50	1.22
6598803--6598851	10	4.9	10	82	5	55	73	8	14	4	1.21
6598799--6598857	16	3.9	16	77	14	56	72	8	13	5	1.24
6598862--6598901	21	2.0	20	85	14	55	72	2	25	0	0.97
6598864--6598902	9	4.4	9	80	6	53	74	2	23	0	0.94
6599049--6599106	29	2.0	29	80	12	66	31	1	25	41	1.66
6599772--6599879	38	2.8	39	78	7	112	21	20	25	32	1.97
6601766--6601808	19	2.2	20	80	12	54	30	18	2	48	1.60
6601962--6602070	38	2.8	39	80	6	123	32	25	20	22	1.98
6601962--6602070	41	2.8	38	81	6	121	32	25	20	22	1.98
6602735--6602792	29	2.0	29	80	12	66	41	25	1	31	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6602932--6602997	26	2.9	20	71	26	51	0	31	3	65	1.08
6602985--6603028	16	2.8	16	83	13	56	4	20	9	65	1.38
6602988--6603030	10	4.3	10	85	8	61	4	18	6	69	1.29
6603055--6603420	191	1.9	192	96	0	671	42	9	4	44	1.56
6603394--6603442	24	2.0	24	88	7	73	61	4	0	34	1.15
6603518--6603590	34	2.3	31	76	17	76	53	6	0	39	1.28
6606744--6606779	3	12.0	3	100	0	72	33	0	0	66	0.92
6606927--6606972	16	3.0	16	75	12	51	41	2	2	54	1.25
6607033--6607072	15	2.5	17	88	12	66	60	0	2	37	1.11
6621381--6622097	358	2.0	357	96	0	1319	37	19	16	26	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213