genome.fa.s14.2.7.7.80.10.50.1000.152.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Length:  64473564

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   

This is table  152  of  213  ( 25468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45523078--45523165	44	2.0	44	90	0	140	36	19	21	22	1.95
45523706--45523768	22	3.0	21	83	6	65	55	1	0	42	1.09
45531332--45531410	23	3.6	23	73	20	71	26	3	6	63	1.36
45534442--45534514	31	2.4	31	84	9	96	45	9	10	34	1.72
45537829--45537870	14	3.1	13	86	10	57	76	2	0	21	0.90
45539531--45539580	26	1.9	26	83	0	64	36	20	20	24	1.95
45539588--45539639	27	1.9	27	92	0	86	34	21	25	19	1.96
45551267--45551308	22	1.9	22	85	9	59	45	0	11	42	1.41
45555368--45555550	40	4.6	40	81	6	212	24	27	22	25	2.00
45555368--45555550	79	2.3	81	82	7	214	24	27	22	25	2.00
45564623--45564681	18	3.5	17	74	19	52	23	5	0	71	1.06
45564620--45564673	20	2.7	21	80	11	60	25	3	0	70	1.04
45564620--45564670	26	2.0	26	81	14	61	25	3	0	70	1.04
45564670--45564721	24	2.2	24	82	0	68	15	13	1	69	1.28
45566312--45566346	16	2.1	17	94	5	63	2	11	0	85	0.69
45566307--45566366	30	2.1	29	84	9	79	6	8	3	81	0.96
45566328--45566385	24	2.4	24	82	5	64	6	10	5	77	1.11
45592924--45593165	50	4.9	50	80	4	240	27	22	27	21	1.99
45595835--45595873	19	2.1	19	90	0	60	33	5	33	28	1.79
45603325--45603405	40	2.0	40	95	0	144	23	20	13	41	1.88
45605114--45605138	5	5.0	5	100	0	50	80	0	0	20	0.72
45606549--45606598	10	4.8	10	85	9	55	64	4	0	32	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45607284--45607372	25	3.6	25	85	0	88	34	11	19	34	1.87
45607310--45607419	25	4.4	25	80	2	121	30	12	18	39	1.88
45610256--45610323	29	2.3	29	82	5	84	27	29	13	29	1.94
45610145--45610472	174	1.9	174	98	0	629	31	24	14	29	1.94
45610432--45610503	29	2.5	29	81	0	90	30	30	12	26	1.93
45613380--45613605	50	4.5	50	77	4	192	23	28	21	27	1.99
45620674--45620716	16	2.7	16	81	0	50	13	23	6	55	1.62
45620986--45621109	50	2.5	50	83	0	158	21	28	23	26	1.99
45632005--45632074	33	2.1	33	94	0	122	52	14	15	17	1.74
45633600--45633840	50	4.7	50	79	6	200	26	21	27	24	1.99
45639812--45639856	23	1.9	24	95	4	83	13	6	17	62	1.52
45645850--45645900	6	8.5	6	91	0	84	1	29	0	68	1.00
45653073--45653130	21	2.7	22	75	15	59	46	6	0	46	1.29
45653503--45653586	28	3.0	27	76	11	64	48	2	1	47	1.22
45658536--45658576	21	2.0	21	85	9	57	53	2	4	39	1.35
45659550--45659604	24	2.3	23	75	6	56	43	5	0	50	1.25
45665343--45665371	11	2.6	11	100	0	58	6	51	6	34	1.55
45669062--45669103	22	1.9	22	90	0	66	59	30	2	7	1.37
45671961--45671985	12	2.1	12	100	0	50	24	28	32	16	1.96
45673360--45673511	45	3.4	45	83	3	180	37	26	13	22	1.92
45678063--45678111	16	2.9	17	81	9	55	48	0	8	42	1.32
45678854--45678904	27	1.9	27	84	11	70	15	13	7	62	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45680407--45680719	110	2.9	108	85	5	404	34	17	15	31	1.92
45680833--45680893	4	15.0	4	75	16	54	70	6	1	21	1.19
45680838--45680913	37	2.2	33	84	11	98	71	7	2	18	1.23
45681188--45681255	3	22.3	3	75	14	59	66	2	2	27	1.21
45681205--45681256	12	4.2	13	90	7	72	71	3	0	25	1.03
45681199--45681255	22	2.6	21	83	10	62	68	3	1	26	1.15
45682482--45683211	132	5.6	132	89	4	1029	29	23	18	29	1.98
45682544--45682870	44	7.4	44	65	11	132	27	24	17	31	1.97
45682834--45683139	38	7.2	43	63	22	119	32	20	18	28	1.97
45684638--45684676	13	3.0	14	92	7	57	0	20	0	79	0.73
45684638--45684704	7	9.0	7	76	20	57	0	19	0	80	0.71
45684647--45684704	9	6.2	10	81	15	63	0	18	0	81	0.70
45688919--45689235	110	2.9	110	90	1	471	35	17	16	31	1.92
45689530--45689575	24	1.9	24	86	8	67	52	2	0	45	1.13
45689525--45689580	22	2.5	22	82	2	67	53	1	1	42	1.21
45691316--45691376	3	20.3	3	100	0	122	32	32	0	34	1.58
45700544--45700623	37	2.2	37	95	0	142	46	15	0	38	1.46
45701440--45701479	15	2.7	15	92	0	71	35	35	2	27	1.71
45704532--45704672	39	3.6	39	80	0	165	31	3	19	44	1.68
45708486--45708543	30	1.9	31	85	3	82	24	20	3	51	1.62
45710275--45710621	50	6.7	50	83	6	340	23	29	20	25	1.99
45710425--45710561	56	2.4	56	92	0	238	27	28	18	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45717713--45717825	25	4.5	25	82	0	127	18	44	13	23	1.85
45719275--45719328	19	2.8	19	88	0	81	37	9	18	35	1.83
45719307--45719351	23	2.0	23	86	4	65	37	6	17	37	1.76
45719288--45719354	19	3.2	21	81	10	75	35	5	19	38	1.76
45719534--45719578	23	2.0	23	81	0	54	22	0	15	62	1.33
45730162--45730188	6	4.5	6	100	0	54	37	0	29	33	1.58
45734363--45734405	6	7.2	6	94	0	77	16	37	0	46	1.47
45737412--45737555	51	2.9	50	83	2	189	26	22	30	20	1.98
45737792--45737830	12	3.2	12	85	0	51	51	5	23	20	1.67
45741623--45741667	23	2.0	23	82	8	56	2	33	2	62	1.20
45744083--45744125	6	7.2	6	94	0	77	65	0	18	16	1.28
45747772--45747804	14	2.3	15	89	5	50	27	12	33	27	1.92
45749140--45749899	88	8.6	88	82	2	846	26	23	25	24	2.00
45749137--45749899	264	2.9	263	85	2	967	26	23	25	24	2.00
45750021--45750058	19	2.1	19	85	14	53	31	13	39	15	1.86
45749969--45750208	115	2.1	116	89	1	365	26	17	28	27	1.98
45750193--45750292	44	2.3	44	85	3	130	33	18	24	25	1.97
45750729--45750784	21	2.8	19	89	10	94	37	10	16	35	1.83
45751274--45751308	17	2.1	17	88	0	52	37	8	0	54	1.31
45751889--45751930	6	6.8	6	91	2	66	64	0	19	16	1.30
45753580--45753698	56	2.1	55	76	14	129	31	10	2	54	1.49
45753788--45753879	27	3.3	27	81	14	91	33	2	7	56	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45757450--45757564	54	2.1	54	80	3	124	20	28	17	33	1.95
45757450--45757568	27	4.4	27	75	4	105	19	29	17	33	1.95
45767100--45767146	14	3.3	14	77	16	51	63	0	29	6	1.19
45770266--45770380	62	1.9	59	87	5	167	40	3	2	53	1.32
45784316--45784362	6	7.7	6	83	4	58	29	2	6	61	1.32
45784314--45784352	13	3.1	13	92	3	62	30	5	2	61	1.31
45787613--45787687	38	2.0	38	100	0	150	29	24	2	44	1.67
45792237--45792275	19	2.1	19	100	0	78	53	15	5	25	1.62
45794469--45794539	26	2.7	26	84	0	97	28	21	25	25	1.99
45797868--45798114	50	4.8	50	80	4	219	27	19	28	24	1.99
45809928--45811112	599	2.0	600	94	0	2068	32	9	18	38	1.83
45811143--45811169	9	3.0	9	100	0	54	55	0	22	22	1.44
45814519--45814570	23	2.3	22	83	3	59	57	0	1	40	1.10
45814533--45814578	22	2.1	23	84	8	60	54	2	2	41	1.25
45816724--45816766	12	3.6	12	87	12	70	53	0	0	46	1.00
45816714--45816766	24	2.2	24	96	0	97	52	0	1	45	1.11
45818475--45818759	144	2.0	144	96	0	525	34	9	20	35	1.85
45824149--45824390	50	4.9	50	80	6	251	22	26	22	28	1.99
45832256--45832299	23	1.9	23	90	9	72	31	47	0	20	1.50
45834224--45834400	39	4.5	39	84	1	212	28	3	20	46	1.69
45835167--45835207	20	2.0	20	86	9	57	29	17	19	34	1.94
45837899--45838010	54	2.0	55	84	3	145	43	7	20	28	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45837985--45838026	6	6.8	6	86	2	57	57	0	26	16	1.40
45839140--45839260	57	2.1	58	86	4	174	52	4	19	23	1.65
45841564--45841616	25	2.2	24	82	3	61	45	3	0	50	1.19
45844620--45844684	30	2.2	30	81	15	73	36	0	21	41	1.53
45849471--45849517	19	2.4	20	92	3	78	19	12	19	48	1.80
45849601--45849640	16	2.4	17	87	8	55	45	0	0	55	0.99
45850835--45850895	32	1.9	32	96	0	113	50	18	3	27	1.62
45850835--45850908	32	2.5	30	87	10	100	51	18	2	27	1.60
45850836--45850922	27	3.0	27	83	11	77	51	18	3	26	1.62
45851119--45851144	9	2.9	9	100	0	52	0	34	0	65	0.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213