genome.fa.s14.2.7.7.80.10.50.1000.206.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Length:  64473564

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   

This is table  206  of  213  ( 25468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61675971--61676005	17	2.1	18	89	10	56	57	0	0	42	0.99
61681255--61681288	6	5.7	6	100	0	68	17	14	50	17	1.79
61681679--61681713	18	2.0	17	88	5	52	45	0	0	54	0.99
61681878--61681968	45	2.0	45	85	2	121	37	28	6	27	1.82
61681949--61682017	16	4.2	16	92	3	120	36	37	1	24	1.65
61681949--61682017	33	2.1	32	94	2	120	36	37	1	24	1.65
61695883--61696007	30	4.1	29	70	15	94	43	11	2	43	1.53
61701485--61701515	11	2.8	11	90	0	53	67	0	0	32	0.91
61704519--61704762	46	5.6	46	83	10	316	29	22	13	34	1.93
61704651--61704721	36	2.0	36	91	0	115	33	18	8	39	1.81
61704608--61704762	82	1.9	82	90	0	247	30	21	11	36	1.89
61709679--61709812	19	6.7	21	78	10	77	40	14	6	38	1.72
61709679--61709736	22	2.6	22	81	7	64	41	17	5	36	1.72
61709715--61709825	19	5.8	19	89	0	177	37	13	9	39	1.76
61709715--61709818	38	2.7	38	98	0	199	38	12	8	40	1.74
61710189--61710517	132	2.5	132	88	1	480	28	21	18	31	1.97
61711826--61711874	19	2.6	19	81	12	64	0	18	2	79	0.83
61711832--61711877	16	3.0	14	82	17	56	0	13	2	84	0.71
61715138--61715318	40	3.8	51	73	16	161	21	29	23	25	1.99
61719532--61719661	19	6.8	19	86	0	188	37	13	8	40	1.74
61719532--61719661	38	3.4	38	95	0	233	37	13	8	40	1.74
61720690--61720726	19	1.9	19	94	0	65	43	21	0	35	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61720936--61721001	33	2.0	33	96	0	123	40	18	3	37	1.66
61722824--61722927	49	2.1	49	92	0	172	30	6	9	52	1.60
61724269--61724298	15	1.9	16	93	6	53	43	0	6	50	1.28
61724290--61724324	18	2.0	17	94	5	61	42	0	0	57	0.99
61724295--61724343	18	2.9	18	82	14	52	46	0	0	53	1.00
61724671--61724710	20	2.0	20	95	0	71	47	5	20	27	1.70
61724704--61724744	20	2.0	20	85	0	55	58	9	7	24	1.55
61724856--61724909	26	2.1	26	82	6	65	38	3	22	35	1.72
61725120--61725173	18	2.8	19	83	10	58	35	3	3	57	1.34
61725920--61726063	69	2.1	68	81	5	164	38	10	9	41	1.71
61728897--61728947	22	2.3	23	80	12	63	25	5	1	66	1.24
61729109--61729182	35	2.1	35	100	0	148	35	10	16	37	1.83
61733730--61733803	29	2.5	29	86	4	94	21	13	16	48	1.80
61733755--61733828	29	2.5	29	82	4	85	25	14	13	45	1.82
61734385--61734454	29	2.3	29	83	9	79	48	14	12	24	1.78
61736176--61736218	3	14.3	3	95	0	77	34	2	0	62	1.08
61736237--61736272	18	2.0	18	88	0	54	33	2	19	44	1.65
61743894--61743924	11	2.8	11	95	0	53	19	48	3	29	1.64
61744468--61744560	18	5.2	18	94	0	150	27	24	17	30	1.97
61748595--61748625	11	2.8	11	95	0	53	19	48	3	29	1.64
61749443--61749473	11	2.8	11	95	0	53	29	3	48	19	1.64
61753517--61753627	18	6.2	18	88	0	150	34	17	20	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61753517--61753627	54	2.1	54	91	0	177	34	17	20	27	1.95
61758012--61758068	29	1.9	30	89	3	89	45	8	5	40	1.58
61758045--61758076	13	2.4	14	85	15	50	50	3	6	40	1.43
61767953--61767992	17	2.3	18	86	4	55	65	0	0	35	0.93
61769301--61769414	51	2.3	51	80	4	117	53	8	4	33	1.52
61772241--61772277	19	1.9	19	89	10	58	48	0	2	48	1.15
61772455--61772565	51	2.2	51	95	0	195	53	2	1	42	1.25
61772591--61772623	16	2.1	16	88	5	50	51	9	3	36	1.49
61790437--61790470	16	2.1	16	88	0	50	64	0	0	35	0.94
61794005--61794047	22	1.9	23	85	4	61	51	20	16	11	1.75
61798720--61799423	154	4.6	153	77	5	681	37	17	15	29	1.91
61798697--61799423	313	2.4	299	85	5	920	37	17	15	29	1.90
61805035--61805179	57	2.5	57	84	1	191	22	19	17	40	1.91
61808799--61808865	31	2.2	30	89	5	100	41	14	11	31	1.83
61812530--61812563	17	2.0	17	88	0	50	47	5	0	47	1.26
61812535--61812593	18	3.2	18	77	15	59	40	5	5	49	1.47
61816281--61816330	3	17.3	3	79	8	59	30	0	4	66	1.10
61816284--61816325	18	2.4	18	92	4	68	28	0	4	66	1.12
61818233--61818259	5	5.4	5	100	0	54	81	0	0	18	0.69
61819075--61819189	25	4.6	25	83	1	124	21	23	18	36	1.95
61821995--61822047	3	17.7	3	96	0	97	69	0	0	30	0.88
61825674--61825730	7	8.0	7	75	16	55	66	0	17	15	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61825673--61825712	13	2.9	14	88	7	55	70	0	15	15	1.18
61825674--61825732	15	4.1	15	80	12	61	66	0	18	15	1.26
61826973--61827147	88	2.0	88	82	2	217	26	19	26	26	1.99
61827347--61827609	101	2.6	100	84	4	341	30	20	23	25	1.98
61827347--61827645	100	3.0	100	79	10	340	30	20	23	26	1.98
61827657--61827852	44	4.5	44	71	14	158	30	19	21	28	1.98
61828801--61828854	3	17.0	3	77	11	54	29	1	7	61	1.34
61828985--61829018	18	1.9	18	88	5	52	29	8	5	55	1.54
61831621--61831652	13	2.5	13	94	0	55	46	0	0	53	1.00
61833739--61833795	24	2.4	24	88	5	80	45	14	7	33	1.71
61833751--61833802	24	2.2	24	92	0	86	48	9	5	36	1.60
61835211--61835294	42	2.0	42	92	0	141	39	20	23	16	1.92
61838117--61838164	24	2.0	24	87	0	69	47	10	4	37	1.57
61841193--61841359	85	2.0	85	87	0	244	26	23	20	28	1.99
61842991--61843028	20	2.1	19	85	14	53	31	5	5	57	1.43
61855385--61855415	15	2.1	14	94	5	53	61	0	3	35	1.12
61856398--61856427	14	2.1	14	93	0	51	33	3	0	63	1.11
61858510--61858896	170	2.3	170	89	3	573	33	12	13	40	1.83
61862158--61862222	29	2.4	26	76	14	76	43	1	1	53	1.19
61865649--61865694	6	7.7	6	95	0	74	50	10	0	39	1.38
61865649--61865694	18	2.6	18	92	0	83	50	10	0	39	1.38
61865832--61865884	26	2.0	26	100	0	106	54	15	0	30	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61869905--61869935	12	2.6	12	94	0	53	25	3	35	35	1.72
61874778--61874820	16	2.6	17	88	3	61	44	23	9	23	1.82
61887770--61887839	3	23.3	3	85	5	97	31	4	1	62	1.23
61888272--61888309	20	2.1	19	85	14	53	31	5	5	57	1.43
61892245--61892290	19	2.5	17	80	19	56	26	2	4	67	1.21
61897230--61897270	21	2.0	21	85	0	55	31	4	7	56	1.48
61904074--61904104	16	1.9	16	93	0	53	16	6	3	74	1.16
61907611--61907650	15	2.7	15	88	3	55	35	0	0	65	0.93
61909032--61909076	21	2.1	21	95	0	81	40	31	8	20	1.83
61909913--61909977	32	2.1	32	97	2	123	47	12	9	30	1.72
61915329--61915358	13	2.3	13	94	0	51	3	13	10	73	1.21
61915343--61915367	10	2.5	10	100	0	50	0	16	16	68	1.22
61915949--61916013	32	2.1	32	97	2	123	47	12	9	30	1.72
61924345--61924377	13	2.4	14	85	5	50	30	30	15	24	1.95
61924456--61924509	15	3.7	15	75	5	56	16	1	40	40	1.59
61924462--61924530	29	2.4	29	80	4	86	18	5	40	34	1.75
61927939--61927982	24	2.0	22	82	13	54	47	4	0	47	1.22
61929186--61929214	14	2.1	14	100	0	58	62	0	13	24	1.32
61929552--61930094	271	2.0	271	94	1	955	33	17	14	34	1.90
61944058--61944092	16	2.3	15	90	5	52	22	14	8	54	1.67
61944530--61944592	23	2.7	24	78	9	67	41	1	0	57	1.08
61944548--61944580	15	2.1	16	88	5	50	48	3	0	48	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61949737--61949780	19	2.2	20	84	4	54	43	4	4	47	1.44
61950644--61950683	19	2.1	19	85	0	53	47	0	2	50	1.14
61951890--61951936	24	2.0	24	100	0	94	40	17	17	25	1.90
61957062--61957139	39	2.0	39	100	0	156	28	10	33	28	1.90
61961894--61962061	85	1.9	88	89	4	261	32	20	9	37	1.85
61961891--61962106	88	2.4	87	81	6	249	35	20	9	34	1.85
61962169--61962265	8	11.0	9	76	18	64	72	0	3	24	0.99
61962171--61962266	39	2.4	41	77	13	110	71	0	3	25	1.00
61962174--61962242	29	2.5	29	78	17	76	73	0	1	24	0.91
61962199--61962240	21	2.0	20	86	13	59	78	0	0	21	0.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213