genome.fa.s14.2.7.7.80.10.50.1000.58.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Length:  64473564

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   

This is table  58  of  213  ( 25468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15785955--15786008	21	2.5	24	77	22	73	38	16	7	37	1.77
15785966--15786021	19	2.8	19	91	5	85	39	16	8	35	1.80
15786736--15786821	40	2.2	40	95	0	154	12	26	18	41	1.87
15786758--15786823	20	3.3	20	70	8	71	13	25	18	42	1.87
15789707--15789814	41	2.6	41	85	2	137	21	20	26	31	1.98
15789735--15789874	41	3.4	41	84	0	181	22	20	25	30	1.98
15793274--15793351	5	14.8	5	74	15	68	38	5	17	38	1.72
15793274--15793358	27	3.2	26	73	18	75	40	4	17	37	1.71
15795307--15795362	25	2.2	25	80	0	67	35	19	21	23	1.96
15795567--15795619	24	2.2	24	83	6	63	30	18	35	15	1.92
15795941--15795981	21	2.0	21	85	0	55	39	17	2	41	1.62
15799495--15799529	18	2.0	18	94	5	63	34	22	17	25	1.96
15799537--15799817	18	15.9	18	75	9	123	25	16	27	30	1.97
15799533--15799817	53	5.4	52	81	7	213	25	16	28	30	1.97
15799581--15799857	35	7.9	35	82	2	279	24	14	29	31	1.95
15799581--15799848	88	3.0	88	80	3	315	24	14	29	31	1.95
15799859--15799963	33	3.2	33	83	5	140	40	24	13	20	1.89
15799874--15799965	17	5.6	16	68	29	61	40	25	13	21	1.89
15799970--15800029	22	2.7	22	78	0	66	35	13	18	33	1.89
15801907--15801969	30	2.2	29	86	11	85	15	26	4	52	1.63
15804853--15805057	63	3.2	65	72	18	180	38	5	16	40	1.71
15804861--15805060	62	3.2	60	74	14	176	38	5	16	40	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15805271--15805366	41	2.4	41	87	5	133	29	15	18	36	1.92
15807530--15807563	9	3.6	9	85	14	50	70	0	0	29	0.87
15807537--15807562	11	2.4	11	100	0	52	76	0	0	23	0.78
15808445--15808497	22	2.5	21	78	3	52	13	7	3	75	1.15
15809060--15809102	22	2.0	22	85	0	59	39	18	0	41	1.51
15811623--15811664	16	2.4	17	80	15	50	64	0	7	28	1.20
15813951--15813987	5	7.6	5	87	6	58	18	0	2	78	0.87
15816597--15816634	9	4.2	9	80	12	51	73	0	0	26	0.83
15816596--15816734	26	5.2	26	67	17	81	63	0	0	35	1.00
15816609--15816678	16	4.2	16	68	10	59	68	0	0	31	0.90
15816607--15816678	14	4.2	17	67	19	60	68	0	0	31	0.90
15817770--15817844	38	1.9	40	83	5	100	36	1	6	56	1.34
15817773--15817865	20	4.8	19	68	13	64	35	1	7	55	1.35
15818860--15818927	19	3.6	19	75	18	70	57	2	0	39	1.14
15827377--15827428	18	2.7	20	74	17	56	59	0	3	36	1.16
15827438--15827516	33	2.4	32	83	4	95	44	17	11	26	1.83
15827506--15827572	34	1.9	35	84	3	91	49	10	4	35	1.57
15827506--15827572	35	1.9	35	84	6	91	49	10	4	35	1.57
15829220--15829244	10	2.5	10	100	0	50	12	40	20	28	1.87
15831898--15831973	29	2.6	29	100	0	152	26	10	13	50	1.73
15833276--15833309	9	3.8	9	88	0	50	47	0	0	52	1.00
15834701--15834756	12	4.7	12	80	8	60	58	3	5	32	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15834712--15834756	3	15.0	3	81	9	56	62	2	4	31	1.27
15836374--15836503	43	3.0	44	61	10	104	26	21	20	32	1.97
15836361--15836521	87	1.9	87	91	0	268	24	21	20	33	1.97
15836543--15836844	89	3.4	88	93	1	523	22	28	20	28	1.99
15836540--15836848	44	7.0	44	94	0	510	22	28	20	28	1.99
15838160--15838219	19	3.3	18	72	19	61	18	5	3	73	1.16
15847979--15848017	17	2.5	15	84	15	60	61	0	0	38	0.96
15847984--15848017	17	2.0	17	100	0	68	58	0	0	41	0.98
15848075--15848138	28	2.4	28	86	5	87	56	0	0	43	0.99
15847977--15848225	110	2.2	113	88	9	357	51	3	1	43	1.25
15849597--15849700	49	2.1	49	87	0	145	51	9	7	30	1.62
15851585--15851619	2	17.5	2	100	0	70	51	48	0	0	1.00
15853781--15853913	62	2.1	63	80	6	146	37	12	9	40	1.75
15857809--15857862	26	2.1	26	82	0	63	40	0	1	57	1.09
15865235--15865267	4	8.2	4	100	0	66	24	0	24	51	1.48
15873660--15874008	174	2.0	172	82	5	418	42	18	11	26	1.85
15878573--15878627	28	2.0	28	89	7	85	56	1	9	32	1.41
15878638--15878699	21	3.0	21	76	7	63	69	0	16	14	1.19
15879471--15879500	12	2.4	13	88	11	53	13	36	0	50	1.42
15879472--15879524	22	2.4	22	87	9	72	22	30	0	47	1.52
15879472--15879524	11	4.7	11	80	13	63	22	30	0	47	1.52
15879472--15879526	12	4.9	11	77	20	51	23	29	0	47	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15879592--15879632	15	2.8	15	96	3	75	34	0	0	65	0.93
15881893--15882021	64	2.0	64	98	0	249	33	5	12	48	1.63
15885032--15885378	124	2.8	125	91	0	554	33	23	14	28	1.94
15898911--15898935	12	2.1	12	100	0	50	8	0	8	84	0.79
15901731--15901770	21	2.0	20	90	9	64	55	0	5	40	1.22
15909593--15909654	26	2.3	27	81	10	74	45	20	19	14	1.85
15912783--15912836	28	2.0	27	85	10	74	16	22	27	33	1.95
15924761--15924806	19	2.3	20	89	10	69	63	0	2	34	1.07
15927775--15927863	13	6.9	13	72	18	53	71	3	19	5	1.20
15927768--15927861	12	7.9	11	72	17	64	72	3	18	6	1.20
15931381--15931429	19	3.1	16	80	19	50	67	0	8	24	1.18
15931398--15931435	19	2.0	19	85	10	51	73	2	7	15	1.17
15931405--15931430	13	2.0	13	100	0	52	76	0	7	15	0.99
15931476--15931510	17	1.9	18	88	11	54	71	0	28	0	0.86
15931835--15931872	20	1.9	20	88	0	58	52	0	15	31	1.43
15932368--15932501	40	3.4	39	75	13	123	26	15	24	33	1.95
15936544--15936574	14	2.3	13	94	5	53	77	0	22	0	0.77
15939502--15939544	21	2.0	21	100	0	86	23	23	9	44	1.82
15945411--15945456	6	7.7	6	100	0	92	0	17	34	47	1.48
15945960--15946024	29	2.2	29	86	2	85	30	10	10	47	1.73
15946403--15946442	3	13.3	3	100	0	80	67	0	32	0	0.91
15952789--15952819	12	2.7	11	90	9	53	64	0	0	35	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15952856--15952897	22	1.9	22	90	0	66	50	2	7	40	1.43
15954360--15954404	23	2.0	23	86	0	63	31	0	0	68	0.89
15955362--15955397	18	2.1	18	89	5	56	44	8	0	47	1.33
15955337--15955414	38	2.1	37	81	13	88	46	3	1	48	1.28
15966308--15966359	11	4.6	11	85	2	68	23	30	1	44	1.64
15966307--15966381	33	2.2	33	81	9	89	25	30	1	42	1.63
15966307--15966383	22	3.5	22	80	18	88	25	29	1	42	1.63
15968453--15968495	21	2.0	21	86	8	61	51	18	4	25	1.66
15970606--15970657	22	2.4	22	96	0	95	19	28	21	30	1.97
15973657--15973724	33	2.0	35	91	5	113	48	29	5	16	1.69
15975825--15975863	15	2.4	16	83	16	53	61	0	0	38	0.96
15975831--15975862	15	2.1	16	94	5	57	62	0	0	37	0.95
15987528--15987575	23	2.1	22	84	3	60	47	4	18	29	1.67
15987705--15987775	37	1.9	37	85	0	97	47	2	2	46	1.31
15988491--15988546	22	2.5	22	85	2	76	26	28	0	44	1.54
15988481--15988528	10	4.5	10	77	12	51	20	31	0	47	1.50
15988513--15988631	51	2.3	50	85	7	159	29	22	0	47	1.51
15989774--15989805	7	4.6	7	100	0	64	28	0	12	59	1.34
15990457--15990491	18	1.9	18	94	0	61	25	31	8	34	1.86
15990887--15991004	25	4.9	25	74	15	122	42	0	13	43	1.50
15991012--15991152	13	10.4	13	69	14	70	47	24	0	26	1.57
15991010--15991214	55	3.7	55	88	6	276	46	27	0	24	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15991137--15991303	41	3.9	41	82	12	156	46	30	0	22	1.57
15991124--15991341	54	4.4	50	80	17	244	46	28	0	24	1.56
15991157--15991303	42	3.4	42	91	7	224	46	31	0	22	1.52
15991010--15991387	109	3.5	110	74	15	351	46	26	0	25	1.57
15991288--15991314	6	4.5	6	100	0	54	37	48	0	14	1.45
15991320--15991357	13	2.9	13	80	11	51	52	15	0	31	1.43
15991346--15991542	29	6.7	29	76	15	197	45	24	0	28	1.57
15991306--15991564	87	3.0	87	83	5	287	47	23	0	28	1.55
15991346--15991542	62	3.3	58	77	15	197	45	24	0	28	1.57
15991389--15991462	24	3.0	23	83	11	85	44	28	0	27	1.55

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213