Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Length:  64473564

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   

This is table  150  of  213  ( 25468 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45049334--45049393
21
2.8
20
73
9
57
33
45
0
21
1.52
45049432--45049477
7
6.7
7
78
14
51
39
43
0
17
1.49
45049348--45049524
81
2.1
82
83
12
214
42
29
0
27
1.56
45049435--45049476
13
3.2
13
86
3
57
38
45
0
16
1.48
45049612--45049644
14
2.3
15
94
5
59
36
33
0
30
1.58
45050033--45050173
41
3.4
41
82
3
176
31
27
19
21
1.98
45057577--45057602
7
3.7
7
100
0
52
30
42
0
26
1.56
45057592--45057643
21
2.5
22
81
12
56
42
46
1
9
1.47
45057647--45057819
81
2.1
80
82
10
208
43
24
2
29
1.66
45057838--45057870
15
2.3
15
89
5
50
36
30
0
33
1.58
45058266--45058376
41
2.7
41
92
2
179
28
29
19
21
1.98
45066887--45066913
14
1.9
14
100
0
54
74
0
3
22
0.98
45067803--45067872
19
3.7
19
74
18
74
60
5
0
34
1.21
45067854--45067898
16
2.6
18
75
10
58
55
4
0
40
1.20
45067840--45067898
19
3.4
17
76
11
57
55
6
0
37
1.26
45070547--45070937
128
3.0
128
88
2
525
25
29
19
25
1.99
45070547--45070883
43
7.9
43
88
1
498
24
29
20
25
1.99
45075540--45075572
16
2.1
16
88
11
50
57
0
0
42
0.98
45075673--45075726
7
7.6
7
77
4
54
48
29
0
22
1.51
45075673--45075784
14
7.4
14
69
20
64
47
29
2
20
1.64
45075673--45075721
14
3.4
14
88
5
71
46
32
0
20
1.51
45075954--45076353
41
9.9
41
88
2
592
31
28
20
18
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45076411--45076526
40
3.0
40
80
2
137
23
22
20
33
1.97
45083409--45083446
11
3.5
11
85
7
51
76
0
2
21
0.91
45083410--45083446
10
3.6
10
92
3
56
75
0
2
21
0.92
45083766--45083812
14
3.0
16
78
15
53
29
0
4
65
1.11
45083773--45083812
14
2.6
15
84
15
55
30
0
2
67
1.04
45084567--45084594
6
4.7
6
100
0
56
32
0
0
67
0.91
45084567--45084602
18
2.0
18
88
0
54
30
2
0
66
1.06
45091140--45091377
84
2.8
84
96
0
449
34
26
17
21
1.95
45091142--45091374
41
5.6
40
82
8
295
35
26
17
21
1.95
45093515--45093578
27
2.4
27
83
0
83
23
10
29
35
1.89
45093816--45094051
41
5.8
41
85
2
332
22
19
30
27
1.97
45094396--45094432
15
2.5
15
91
4
58
24
0
35
40
1.55
45094459--45094512
15
3.6
16
79
16
55
24
1
38
35
1.66
45094788--45094854
21
3.2
20
70
12
55
20
1
29
47
1.59
45098097--45098152
27
2.1
27
83
6
69
26
8
1
62
1.35
45099300--45099390
43
2.1
43
87
2
130
34
10
9
45
1.73
45099741--45099868
43
3.0
43
78
6
136
25
18
25
30
1.98
45099840--45099896
28
2.0
28
86
0
78
29
17
26
26
1.97
45099796--45099939
71
2.0
72
89
4
220
27
17
25
29
1.97
45099868--45099950
43
1.9
43
87
4
123
27
13
25
33
1.93
45100053--45100095
22
2.0
22
90
0
68
48
27
13
9
1.73
45103495--45103769
41
6.7
41
91
1
426
17
22
29
30
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45104295--45104339
7
6.4
7
84
0
63
17
0
46
35
1.49
45104308--45104347
21
1.9
21
84
0
53
20
0
47
32
1.50
45104945--45104998
27
2.0
27
100
0
108
55
3
18
22
1.58
45109799--45109846
22
2.0
23
84
11
62
54
2
2
41
1.24
45109899--45110007
43
2.6
43
86
4
141
22
16
33
28
1.95
45110017--45110099
42
1.9
42
82
4
103
30
26
19
24
1.98
45111843--45111902
22
2.7
23
73
19
63
66
6
0
26
1.16
45111852--45111885
4
8.0
4
90
9
50
73
2
0
23
0.97
45113239--45113290
23
2.3
22
75
21
54
9
23
1
65
1.32
45113284--45113322
18
2.2
18
85
0
51
12
23
2
61
1.43
45115654--45115713
22
2.7
23
73
19
63
66
6
0
26
1.16
45115663--45115696
4
8.0
4
90
9
50
73
2
0
23
0.97
45117623--45118280
47
13.5
47
85
7
814
32
8
29
29
1.87
45118037--45118080
21
2.1
21
100
0
88
34
0
31
34
1.58
45117990--45118127
68
2.0
68
98
0
267
33
5
29
31
1.81
45117941--45118174
115
2.0
116
94
1
416
33
6
29
30
1.83
45117892--45118221
162
2.0
164
95
2
592
33
7
29
30
1.84
45118399--45118477
37
2.1
37
86
4
106
24
18
31
25
1.98
45121784--45121851
33
2.1
33
97
0
127
25
11
16
47
1.80
45124513--45124543
14
2.2
14
100
0
62
19
6
29
45
1.75
45125349--45125556
91
2.3
91
85
2
265
44
4
3
46
1.42
45125586--45125617
16
1.9
17
93
6
57
53
0
0
46
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45125610--45125822
61
3.4
63
69
17
194
41
2
6
49
1.41
45125572--45125864
120
2.4
120
92
2
482
42
2
5
50
1.36
45125693--45125727
18
2.0
17
88
5
52
40
0
0
60
0.97
45125813--45125847
18
2.0
17
88
5
52
45
0
0
54
0.99
45125801--45126075
147
1.9
149
96
1
509
47
2
3
46
1.33
45125960--45125994
18
2.0
17
88
5
52
45
0
0
54
0.99
45126156--45126250
45
2.1
45
88
1
138
32
27
5
34
1.79
45126231--45126282
16
3.2
16
88
0
77
34
34
0
30
1.58
45127148--45127179
6
5.3
6
100
0
64
18
18
31
31
1.95
45130245--45130300
18
3.2
18
72
10
53
60
1
1
35
1.17
45134378--45134420
4
10.0
4
85
14
59
72
0
0
27
0.85
45136209--45136269
30
2.0
30
90
0
95
13
29
32
24
1.93
45138062--45138143
6
13.5
6
75
10
60
79
6
4
9
1.05
45144165--45144225
30
2.0
30
83
0
77
14
29
32
22
1.94
45146319--45146358
14
2.8
14
96
3
71
7
5
25
62
1.42
45151220--45151250
15
2.1
15
100
0
62
38
6
32
22
1.80
45152208--45152250
22
2.0
22
90
0
68
48
4
0
46
1.22
45166432--45166525
46
2.0
46
91
0
152
25
19
20
35
1.96
45173943--45174019
25
3.0
25
81
5
75
32
23
23
20
1.98
45175089--45175381
111
2.7
111
89
3
434
33
20
16
30
1.94
45175428--45175467
20
2.1
18
86
13
53
57
2
15
25
1.50
45175780--45175810
3
10.3
3
92
0
53
64
0
3
32
1.09
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45177250--45177355
50
2.1
50
85
0
140
33
19
16
31
1.94
45177333--45177705
50
7.5
49
70
10
209
23
21
22
31
1.98
45177333--45177906
100
5.8
98
83
4
598
23
21
21
32
1.98
45177989--45179323
46
29.2
46
87
1
1788
29
27
15
27
1.96
45180539--45180592
9
6.6
9
75
16
55
11
11
0
77
0.99
45180540--45180589
15
3.3
15
76
23
59
12
12
0
76
1.04
45180555--45180593
11
3.4
11
86
13
60
10
10
0
79
0.94
45181387--45181438
19
2.7
18
91
5
77
1
17
0
80
0.80
45181392--45181433
13
3.3
13
83
9
52
0
16
0
83
0.65
45181433--45181470
8
4.8
8
87
12
60
7
0
13
78
0.94
45181403--45181445
19
2.3
19
91
0
68
2
11
2
83
0.83
45181392--45181491
11
9.2
11
70
6
51
5
8
5
82
0.96
45184850--45185157
110
2.8
110
85
2
390
34
18
15
30
1.93
45185204--45185243
20
2.1
18
86
13
53
57
2
15
25
1.50
45185557--45185596
3
13.3
3
94
0
71
65
0
2
32
1.06
45187666--45187765
42
2.4
42
94
0
173
24
28
12
36
1.91
45199021--45199102
3
27.3
3
71
18
55
60
4
2
31
1.30
45200428--45200786
43
8.6
43
72
9
285
29
23
19
28
1.98
45200290--45200799
126
4.0
126
91
0
768
27
23
20
28
1.99
45205488--45205552
27
2.5
25
87
9
87
64
3
15
16
1.41
45205507--45205564
27
2.1
27
87
0
80
63
8
12
15
1.50
45216889--45216926
3
12.7
3
100
0
76
68
0
31
0
0.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45217341--45217375
15
2.3
15
90
9
54
42
20
14
22
1.88
45217750--45217812
19
3.3
20
82
8
78
38
0
1
60
1.07
45218101--45218167
25
2.5
26
77
15
66
17
1
19
61
1.43
45218406--45218454
16
3.1
16
80
8
64
42
6
28
22
1.77
45218409--45218461
16
3.3
15
79
10
61
43
5
28
22
1.76
45218443--45218536
44
2.1
44
88
4
134
30
5
28
35
1.80
45218642--45218686
22
2.1
22
91
4
74
55
2
0
42
1.12
45218648--45218850
28
6.9
29
67
23
97
54
2
0
41
1.22
45218710--45218910
61
3.3
60
73
12
212
50
4
1
42
1.35
45218679--45218944
120
2.2
120
98
0
514
51
3
1
42
1.28

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213