genome.fa.s14.2.7.7.80.10.50.1000.180.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Length:  64473564

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   

This is table  180  of  213  ( 25468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54280862--54280904	7	6.1	7	83	0	50	27	46	0	25	1.53
54281042--54281156	60	1.9	62	87	7	173	46	20	0	32	1.51
54281645--54281774	40	3.2	41	81	9	142	31	20	21	26	1.98
54283392--54283451	5	12.0	5	76	13	61	78	0	3	18	0.89
54283392--54283450	31	2.0	29	83	12	75	79	0	3	16	0.86
54283390--54283451	24	2.8	22	85	7	72	77	0	4	17	0.94
54293704--54293889	73	2.5	73	96	0	345	40	24	5	28	1.78
54293890--54293918	3	9.7	3	100	0	58	68	0	0	31	0.89
54298248--54298300	3	17.7	3	96	0	97	67	1	0	30	1.01
54300582--54300628	15	2.9	16	78	12	51	40	10	2	46	1.50
54300783--54300861	24	3.2	24	73	8	77	30	8	0	60	1.27
54301538--54301580	22	2.0	22	86	4	61	48	9	0	41	1.35
54304864--54305441	100	5.8	99	84	4	693	23	21	22	32	1.98
54304851--54305447	50	12.0	50	72	5	420	23	20	22	32	1.98
54307818--54307842	13	1.9	13	100	0	50	8	0	24	68	1.16
54309655--54309756	41	2.5	41	93	0	168	22	21	25	30	1.99
54315699--54315723	13	1.9	13	100	0	50	8	0	24	68	1.16
54317532--54317637	41	2.6	41	93	0	176	21	20	25	32	1.98
54323667--54323713	15	2.9	16	78	12	51	40	10	2	46	1.50
54323868--54323945	23	3.2	24	73	12	77	30	8	0	60	1.28
54327388--54327434	15	2.9	16	78	12	51	40	10	2	46	1.50
54327589--54327667	24	3.2	24	73	8	77	30	8	0	60	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54328344--54328386	22	2.0	22	86	4	61	48	9	0	41	1.35
54331668--54332249	100	5.8	100	81	3	672	22	19	24	33	1.97
54331658--54332255	50	12.0	50	73	4	427	22	19	24	33	1.97
54343137--54343498	181	2.0	181	94	1	636	42	14	10	32	1.80
54351285--54351327	22	2.0	22	86	4	61	41	0	9	48	1.35
54351996--54352071	23	3.2	23	71	10	71	57	0	7	34	1.28
54351985--54352104	49	2.5	48	80	14	122	60	0	7	32	1.25
54352236--54352282	18	2.8	17	78	12	53	46	2	10	40	1.50
54353828--54353870	19	2.3	19	84	8	52	37	9	25	27	1.87
54355724--54355795	24	2.9	24	75	4	72	61	0	8	30	1.26
54355958--54356004	18	2.8	17	78	12	53	46	2	10	40	1.50
54365969--54366011	21	2.0	21	95	0	77	48	4	20	25	1.69
54367387--54367419	14	2.2	15	89	10	50	18	0	0	81	0.68
54367388--54367430	22	2.0	21	90	9	68	18	2	0	79	0.85
54367388--54367433	21	2.2	21	88	7	67	17	2	0	80	0.81
54369459--54369489	12	2.6	12	94	0	53	29	0	12	58	1.35
54371465--54371506	18	2.3	19	87	4	59	54	7	2	35	1.41
54374171--54374224	25	2.2	25	86	0	72	25	12	44	16	1.84
54374791--54374837	12	3.6	13	77	8	51	29	2	36	31	1.70
54374790--54374838	25	2.0	25	88	8	73	28	2	38	30	1.68
54375751--54375918	27	6.3	27	78	6	162	45	19	11	23	1.83
54375751--54375918	54	3.1	54	83	5	189	45	19	11	23	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54375761--54375928	81	2.1	80	84	5	214	43	19	12	24	1.86
54382444--54382482	21	1.9	21	89	5	62	23	25	35	15	1.94
54386974--54387236	27	9.7	27	80	1	285	42	21	15	19	1.88
54394960--54395086	65	2.0	65	98	0	245	27	12	25	34	1.92
54405581--54405609	13	2.1	14	93	6	51	68	13	6	10	1.37
54427645--54427711	20	3.4	19	82	10	73	19	25	0	55	1.43
54429006--54429059	22	2.5	23	90	6	78	38	22	0	38	1.54
54429014--54429059	22	2.1	22	100	0	92	39	21	0	39	1.54
54442308--54442342	7	4.9	7	96	3	61	0	14	0	85	0.59
54448952--54448984	17	2.0	17	88	5	50	18	6	9	66	1.40
54456095--54456133	21	1.9	21	89	5	62	17	33	20	28	1.96
54463444--54463595	41	3.7	41	83	3	173	23	30	13	32	1.93
54463444--54463595	82	1.9	82	82	8	193	23	30	13	32	1.93
54470762--54470915	41	3.8	39	84	9	191	21	27	16	34	1.95
54473751--54473949	102	2.0	102	100	0	398	29	18	20	32	1.96
54475542--54475693	54	2.8	54	82	5	166	26	15	30	26	1.96
54475543--54475693	27	5.6	27	82	5	135	27	15	30	27	1.96
54483542--54483693	54	2.8	54	82	5	166	26	15	30	26	1.96
54483543--54483693	27	5.6	27	82	5	135	27	15	30	27	1.96
54485706--54485741	17	2.1	17	94	0	63	41	11	0	47	1.39
54493424--54493472	24	2.1	22	82	17	55	53	2	14	30	1.52
54493468--54493523	24	2.4	23	80	11	60	64	1	5	28	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54495256--54495395	44	3.2	43	66	13	104	22	23	27	26	2.00
54495186--54495435	89	2.8	88	87	2	322	22	24	24	28	2.00
54495411--54495523	44	2.6	44	84	6	135	26	23	21	28	1.99
54495560--54496409	44	19.6	44	69	11	344	28	24	19	27	1.98
54495539--54496020	218	2.2	218	90	1	743	28	25	18	27	1.98
54495835--54496192	173	2.1	173	86	2	495	29	22	18	28	1.98
54495967--54496375	216	1.9	216	84	2	552	28	23	17	29	1.97
54495835--54496274	173	2.5	171	80	4	391	29	23	18	28	1.98
54496259--54496366	43	2.5	44	80	10	116	33	21	16	28	1.95
54496296--54496409	45	2.6	44	80	6	122	30	25	19	24	1.98
54496008--54496409	216	1.9	217	86	3	576	28	23	19	28	1.98
54498556--54498592	17	2.2	17	90	0	56	0	16	0	83	0.64
54503005--54503038	18	1.9	18	88	5	52	50	0	5	44	1.26
54503143--54503198	24	2.4	22	80	11	58	62	1	3	32	1.23
54510661--54510840	89	2.0	89	96	0	333	32	13	10	43	1.78
54524994--54525027	16	2.1	17	88	5	52	70	0	0	29	0.87
54527201--54527231	11	2.8	11	100	0	62	9	12	48	29	1.73
54532533--54532571	19	2.0	19	85	14	53	25	2	2	69	1.14
54532608--54532671	20	3.3	20	78	6	69	32	0	7	59	1.26
54532618--54532670	20	2.7	20	85	2	72	33	0	9	56	1.32
54533177--54533243	31	2.2	29	82	10	73	22	19	8	49	1.76
54536533--54536596	25	2.7	25	81	11	73	35	9	1	53	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54541230--54541263	16	2.1	16	89	10	52	76	0	20	2	0.92
54542342--54542845	88	5.8	88	87	1	681	28	19	24	27	1.98
54542917--54543486	50	11.4	50	74	0	413	32	21	20	25	1.98
54543025--54543439	100	4.2	99	84	2	463	32	22	20	24	1.98
54542936--54543257	150	2.1	150	87	1	466	29	24	21	24	1.99
54542975--54543484	200	2.5	199	78	5	560	32	21	20	25	1.98
54543075--54543450	100	3.8	100	88	0	520	32	22	19	24	1.97
54543537--54543745	44	4.7	45	80	7	196	28	21	23	26	1.99
54543535--54543756	45	5.0	45	80	4	209	28	20	24	26	1.99
54543535--54543751	89	2.4	90	80	5	271	28	21	23	26	1.99
54544874--54545025	46	3.4	46	89	2	220	28	21	15	34	1.94
54548621--54548674	25	2.2	24	81	12	58	29	11	1	57	1.44
54548638--54548678	21	2.0	21	85	9	57	34	7	2	56	1.40
54555032--54555078	13	3.3	15	80	14	55	38	12	4	44	1.62
54559407--54559434	3	9.3	3	100	0	56	35	0	0	64	0.94
54560806--54560884	36	2.2	38	82	11	103	63	6	7	22	1.44
54566599--54566623	4	6.2	4	100	0	50	0	0	24	76	0.80
54568543--54568567	12	2.1	12	100	0	50	24	12	8	56	1.62
54570840--54570867	7	4.0	7	100	0	56	14	0	0	85	0.59
54571121--54571155	14	2.4	14	95	4	61	62	0	37	0	0.95
54571131--54571164	14	2.4	14	90	0	50	73	0	26	0	0.83
54571282--54571330	25	1.9	26	84	12	66	28	2	10	59	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54575258--54575336	33	2.4	34	79	10	83	27	8	43	20	1.81
54577151--54577946	108	7.3	108	84	3	872	59	14	1	25	1.44
54577133--54577946	224	3.7	219	84	4	977	58	14	1	25	1.45
54578014--54578038	4	6.2	4	100	0	50	0	24	0	76	0.80
54581547--54581585	16	2.4	17	86	4	53	38	5	25	30	1.78
54585672--54585730	17	3.3	17	72	21	57	38	0	23	37	1.55
54585659--54585733	37	2.0	37	97	0	141	38	0	22	38	1.55
54585659--54585718	20	3.2	19	73	22	63	41	0	21	36	1.54
54585724--54585762	21	1.9	21	89	5	62	43	2	17	35	1.63
54585793--54586122	75	4.4	75	82	7	372	22	22	23	31	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213