genome.fa.s14.2.7.7.80.10.50.1000.124.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D01
Parameters: 2 7 7 80 10 50 1000
Length:  64473564

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   

This is table  124  of  213  ( 25468 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35874863--35875089	113	2.0	117	92	7	389	32	13	19	34	1.91
35875532--35875621	44	2.0	45	89	8	141	24	15	23	36	1.94
35881709--35881762	17	3.2	17	81	0	63	7	12	3	75	1.14
35905252--35905462	40	5.3	39	81	6	246	27	28	20	23	1.99
35905252--35905462	80	2.7	80	90	1	327	27	28	20	23	1.99
35908559--35908779	27	8.3	26	79	6	140	46	17	17	18	1.84
35908567--35908777	54	3.9	53	76	10	198	46	17	18	18	1.85
35908567--35908780	81	2.7	80	79	8	220	46	17	17	18	1.85
35922610--35922797	40	4.7	40	93	0	304	21	26	20	30	1.98
35931838--35931920	36	2.3	36	79	4	87	7	24	3	65	1.35
35931864--35931931	33	2.1	33	81	10	77	11	19	1	67	1.29
35933032--35933088	10	5.3	11	89	10	91	17	0	8	73	1.07
35933032--35933088	21	2.6	22	97	2	107	17	0	8	73	1.07
35937076--35937127	23	2.3	22	75	21	54	9	23	1	65	1.32
35940985--35941111	40	3.2	40	93	1	218	45	14	8	30	1.76
35946924--35946976	22	2.4	22	100	0	106	33	16	15	33	1.90
35947751--35947785	11	3.2	11	87	0	52	68	5	2	22	1.24
35950402--35950439	12	3.2	12	100	0	76	76	7	0	15	1.01
35955286--35955463	27	6.6	27	84	3	205	29	28	15	26	1.96
35955307--35955462	82	1.9	81	88	3	233	29	28	15	26	1.96
35963173--35963230	29	2.0	29	96	0	107	36	24	6	32	1.82
35966441--35966479	18	2.2	18	90	9	62	71	2	20	5	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35968246--35968317	33	2.1	34	89	2	110	38	6	12	41	1.70
35975116--35975140	13	1.9	13	100	0	50	48	0	8	44	1.32
35982225--35982256	16	2.0	16	100	0	64	43	18	12	25	1.85
35984351--35984401	14	3.6	14	80	15	68	74	1	19	3	1.07
35995038--35995155	50	2.3	52	84	5	152	38	12	16	32	1.86
35999211--35999251	13	3.2	13	86	10	57	56	2	12	29	1.49
36001111--36001278	80	2.1	80	83	5	207	27	26	20	25	1.99
36001148--36001278	40	3.3	40	88	2	192	28	26	20	24	1.99
36009027--36009194	40	4.2	40	82	8	148	27	27	20	24	1.99
36009062--36009247	80	2.3	80	83	9	229	27	27	20	23	1.99
36009064--36009247	40	4.6	40	83	7	205	27	27	21	23	1.99
36015753--36015842	45	2.0	45	89	4	137	34	23	16	25	1.95
36016961--36017013	23	2.3	23	90	0	79	26	11	22	39	1.88
36021429--36021496	27	2.5	28	92	4	113	39	8	1	50	1.43
36021498--36021545	24	1.9	26	87	8	73	87	6	2	4	0.73
36021498--36021545	16	3.0	15	84	9	60	87	6	2	4	0.73
36022655--36022683	15	1.9	15	100	0	58	27	6	41	24	1.80
36022663--36022697	18	1.9	18	88	0	52	31	5	45	17	1.71
36027396--36027449	27	2.0	27	82	10	65	11	3	3	81	0.95
36027441--36027509	27	2.5	29	88	6	108	46	0	11	42	1.40
36027545--36027586	19	2.3	18	92	8	68	71	7	0	21	1.09
36027545--36027597	20	2.7	20	85	2	54	67	9	0	22	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36028290--36028443	10	15.7	10	65	24	53	1	31	0	67	0.99
36028321--36028412	5	19.0	5	70	14	50	2	33	0	64	1.06
36028271--36028425	38	4.3	36	81	15	155	1	31	0	67	0.99
36028367--36028440	14	5.1	14	72	22	55	0	31	0	68	0.89
36028361--36028440	34	2.8	28	75	24	85	0	32	0	67	0.91
36028268--36028425	34	4.4	34	75	18	128	1	31	0	67	0.99
36028401--36028443	22	1.9	23	85	4	61	0	30	0	69	0.88
36028363--36028444	28	2.7	30	75	19	89	0	32	0	67	0.91
36028266--36028457	38	4.9	40	77	13	111	1	33	0	65	1.00
36028573--36028612	8	5.0	8	85	11	55	5	0	7	87	0.66
36028572--36028611	17	2.4	17	87	4	55	5	0	5	90	0.57
36029651--36029721	35	2.0	35	100	0	142	30	19	15	33	1.93
36030547--36030623	35	2.2	35	88	2	109	28	14	27	29	1.95
36035465--36035521	20	2.6	21	72	16	53	63	1	22	12	1.38
36035519--36035576	19	3.0	18	85	12	71	67	1	22	8	1.27
36046858--36046885	4	7.0	4	100	0	56	25	0	0	75	0.81
36048537--36048770	51	4.6	51	78	5	267	26	17	26	30	1.97
36048537--36048772	101	2.3	102	83	3	289	25	17	26	30	1.97
36056337--36056387	27	1.9	27	84	4	68	29	23	17	29	1.97
36059654--36059739	22	3.9	22	81	6	84	37	16	26	19	1.93
36064888--36064927	21	1.9	21	85	10	55	57	0	0	42	0.98
36076665--36076694	15	1.9	16	93	6	53	36	6	20	36	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36082484--36082533	21	2.4	21	87	9	68	22	20	26	32	1.98
36082497--36082536	21	1.9	21	100	0	80	22	22	25	30	1.99
36085393--36085446	21	2.7	21	82	5	58	33	27	24	14	1.94
36085407--36085468	21	3.0	21	83	4	72	32	25	30	11	1.91
36090758--36090909	27	5.6	27	88	2	214	30	28	13	27	1.94
36090758--36090909	55	2.8	54	87	2	214	30	28	13	27	1.94
36090758--36090909	82	1.9	82	90	0	241	30	28	13	27	1.94
36112124--36112308	79	2.3	81	83	7	227	24	22	27	24	2.00
36112125--36112308	40	4.6	40	82	9	207	25	22	27	24	2.00
36112177--36112341	79	2.1	79	83	6	201	26	21	27	24	1.99
36118627--36118656	15	2.1	14	93	6	51	90	0	10	0	0.47
36119479--36119544	25	2.6	26	77	15	75	24	28	21	25	1.99
36124173--36124251	38	2.1	38	90	0	122	53	27	1	17	1.52
36124324--36124362	19	2.1	19	100	0	78	69	15	5	10	1.34
36129263--36129307	23	2.0	23	86	8	65	42	2	15	40	1.59
36130501--36131374	114	7.7	114	82	2	1069	33	17	22	26	1.96
36130501--36131361	228	3.8	227	91	0	1346	33	16	22	26	1.96
36131629--36131691	22	3.0	22	77	13	69	11	0	42	46	1.39
36131667--36131691	13	1.9	13	100	0	50	0	0	52	48	1.00
36132225--36132251	12	2.2	12	100	0	54	59	0	0	40	0.98
36135509--36135558	21	2.4	21	86	6	66	34	14	46	6	1.69
36138611--36138788	77	2.3	77	91	1	277	17	17	28	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36138765--36138846	27	2.8	28	87	10	103	14	25	30	29	1.95
36138688--36138943	105	2.5	104	86	1	343	19	20	28	31	1.97
36140385--36140555	48	3.5	48	82	0	180	25	21	29	23	1.99
36154298--36154348	10	5.3	10	80	4	52	29	0	1	68	1.00
36154298--36154339	9	4.6	9	84	3	57	30	0	0	69	0.89
36154296--36154348	18	2.9	19	81	13	67	32	0	1	66	1.03
36157353--36157520	84	2.0	84	86	0	237	36	21	9	32	1.86
36157605--36157689	35	2.4	34	79	11	91	62	2	5	29	1.31
36157638--36157668	16	1.9	16	93	0	53	67	3	6	22	1.28
36157619--36157680	19	3.4	19	71	13	58	56	1	6	35	1.35
36157853--36157966	48	2.4	49	79	7	126	31	7	1	59	1.34
36157928--36157975	20	2.3	22	79	17	57	33	4	2	60	1.27
36158278--36158331	10	5.6	10	73	22	53	61	0	3	35	1.14
36158525--36158597	36	2.0	36	100	0	146	43	10	15	30	1.80
36159791--36159855	17	3.5	17	67	25	51	30	9	12	47	1.72
36159775--36159853	39	2.0	39	97	0	149	29	10	13	46	1.76
36161172--36161250	39	2.0	39	97	0	149	27	11	15	45	1.80
36161476--36161572	49	2.0	49	85	2	133	19	14	22	43	1.87
36166319--36166556	51	4.7	50	78	5	230	25	16	26	31	1.96
36166319--36166564	101	2.5	101	82	3	300	26	16	26	31	1.96
36176049--36176256	91	2.3	91	86	2	274	45	4	2	47	1.39
36176286--36176317	16	1.9	17	93	6	57	53	0	0	46	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36176310--36176522	61	3.4	63	69	17	194	41	2	6	49	1.41
36176272--36176564	120	2.4	120	92	2	482	42	2	5	50	1.36
36176393--36176427	18	2.0	17	88	5	52	40	0	0	60	0.97
36176513--36176547	18	2.0	17	88	5	52	45	0	0	54	0.99
36176501--36176775	147	1.9	149	95	1	500	47	2	3	46	1.33
36176660--36176694	18	2.0	17	94	5	61	48	0	0	51	1.00
36176931--36176982	16	3.2	16	100	0	104	38	36	0	25	1.56
36177431--36177557	43	3.0	42	77	20	145	29	29	19	22	1.98
36179167--36179232	25	2.6	25	80	4	80	30	16	21	31	1.95
36183362--36183392	2	15.5	2	93	0	53	54	0	0	45	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213